Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / NAL-i5K/genomics-workspace issues and pull requests

#360 - Bump global-modules-path and webpack-cli

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#359 - Bump json5 and loader-utils

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#358 - Bump json5, copy-webpack-plugin, webpack and webpack-cli

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#357 - Bump certifi from 2019.11.28 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, python

#356 - Bump qs from 6.5.2 to 6.5.3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#355 - Bump decode-uri-component from 0.2.0 to 0.2.2

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#354 - Bump pillow from 6.2.1 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, python

#353 - Bump loader-utils from 1.1.0 to 1.4.2

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, javascript

#352 - Bump loader-utils from 1.1.0 to 1.4.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, javascript

#351 - Add Apollo link-outs to transcript and protein features

Issue - State: open - Opened by mpoelchau about 2 years ago - 1 comment

#350 - Bump jquery-validation from 1.14.0 to 1.19.5

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies, javascript

#349 - Bump jquery-validation from 1.14.0 to 1.19.4

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, javascript

#348 - Bump django from 2.2.14 to 2.2.28

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies, python

#347 - Bump pillow from 6.2.1 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, python

#346 - change draggableBlastFeature to draggableNeatBlastFeature

Issue - State: open - Opened by childers almost 3 years ago - 1 comment

#345 - Bump django from 2.2.14 to 2.2.27

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#344 - Bump pillow from 6.2.1 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#343 - Bump celery from 4.3.0 to 5.2.2

Pull Request - State: open - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies, python

#342 - google analytics code is missing

Issue - State: open - Opened by mpoelchau about 3 years ago
Labels: bug

#341 - Bump pillow from 6.2.1 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, python

#340 - Bump django from 2.2.14 to 2.2.24

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, python

#339 - Bump django from 2.2.14 to 2.2.22

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, python

#338 - Bump pillow from 6.2.1 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, python

#337 - Bump django from 2.2.14 to 2.2.21

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, python

#336 - Bump urllib3 from 1.24.3 to 1.26.5

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python

#335 - Bump codemirror from 4.5.0 to 5.58.2

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#334 - Bump lodash from 4.17.15 to 4.17.21

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#333 - Problems with multiple space characters in organism name

Issue - State: open - Opened by mpoelchau over 3 years ago
Labels: bug

#332 - Bump underscore from 1.7.0 to 1.12.1

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#331 - Bump django from 2.2.14 to 2.2.20

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, python

#330 - Bump y18n from 4.0.0 to 4.0.1

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#329 - Bump pyyaml from 5.2 to 5.4

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python

#328 - Bump jinja2 from 2.10.3 to 2.11.3

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python

#327 - Bump djangorestframework from 3.10.3 to 3.11.2

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python

#326 - Bump django from 2.2.14 to 2.2.18

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, python

#325 - Bump pillow from 6.2.1 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, python

#324 - Bump elliptic from 6.4.1 to 6.5.4

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#323 - disable travis CI

Issue - State: open - Opened by mpoelchau almost 4 years ago - 1 comment

#322 - Suryasaha manual loading

Pull Request - State: closed - Opened by suryasaha almost 4 years ago

#321 - Using dbtitle in blast-results.js is awkward

Issue - State: open - Opened by mpoelchau almost 4 years ago
Labels: question

#320 - New manual loading instructions

Pull Request - State: closed - Opened by suryasaha almost 4 years ago
Labels: wait for review

#319 - Removed confusing quotes

Pull Request - State: closed - Opened by suryasaha almost 4 years ago

#318 - manage.py addOrganism capitalizes the short_name entry

Issue - State: open - Opened by mpoelchau almost 4 years ago

#317 - Manual workflow is broken

Pull Request - State: closed - Opened by suryasaha almost 4 years ago

#316 - Bump jquery-validation from 1.14.0 to 1.19.3

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies, javascript

#315 - Bump pillow from 6.2.1 to 7.1.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies, python

#314 - Modernize i5k

Pull Request - State: open - Opened by cyu-dsfederal almost 4 years ago

#313 - Upgrades

Pull Request - State: closed - Opened by childers about 4 years ago - 1 comment

#312 - Bump bootstrap-select from 1.6.3 to 1.13.6

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 2 comments
Labels: dependencies, javascript

#311 - Bump elliptic from 6.4.1 to 6.5.3

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies, javascript

#310 - Consider truncating BLAST results when they are too large

Issue - State: open - Opened by mpoelchau over 4 years ago
Labels: bug

#309 - Bump lodash from 4.17.15 to 4.17.19

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies, javascript

#308 - Bump django from 1.11.23 to 1.11.29

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies, python

#307 - Bump jquery from 3.4.0 to 3.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies, javascript

#306 - Update user_guide.rst

Pull Request - State: closed - Opened by HsiuKangHuang over 4 years ago - 1 comment

#305 - Update readthedocs with command line interface documentation

Issue - State: closed - Opened by mpoelchau over 4 years ago

#304 - Bump acorn from 5.7.3 to 5.7.4

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies, javascript

#303 - Bump django from 1.11.23 to 1.11.28

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies, python

#302 - Bump lodash from 4.17.10 to 4.17.15

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies, javascript

#301 - Bump mixin-deep from 1.3.1 to 1.3.2

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies, javascript

#300 - Bump djangorestframework from 3.7.7 to 3.9.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies, python

#299 - Bump bootstrap from 3.3.7 to 3.4.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies, javascript

#298 - Bump jquery from 1.12.4 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies, javascript

#297 - Added seed management command

Pull Request - State: closed - Opened by g8tor about 5 years ago

#296 - Modifying addblast

Pull Request - State: closed - Opened by HsiuKangHuang about 5 years ago - 3 comments

#295 - Bump pillow from 3.4.0 to 6.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago
Labels: dependencies, python

#294 - Bump django from 1.11.22 to 1.11.23

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago - 1 comment
Labels: dependencies

#293 - Addorg3

Pull Request - State: closed - Opened by deming7h777 over 5 years ago - 2 comments

#292 - vulnerabilities of django 1.11.20 and update blastdbcmd argument

Issue - State: closed - Opened by deming7h777 over 5 years ago - 3 comments

#291 - add makeblastdb argument in blast/models.py

Pull Request - State: closed - Opened by deming7h777 over 5 years ago - 5 comments

#290 - Moving docker version to the new repo

Issue - State: closed - Opened by deming7h777 over 5 years ago

#289 - Genomics docker2

Pull Request - State: closed - Opened by deming7h777 over 5 years ago - 1 comment

#288 - The blast_sequence table is big and only getting bigger

Issue - State: open - Opened by childers over 5 years ago - 10 comments

#287 - Genomics docker

Pull Request - State: closed - Opened by deming7h777 over 5 years ago - 5 comments

#286 - update django version to 1.11.20

Pull Request - State: closed - Opened by deming7h777 over 5 years ago - 1 comment

#285 - Sphinx docker documentation

Pull Request - State: closed - Opened by deming7h777 over 5 years ago - 4 comments

#284 - add CLI function to set is_shown

Issue - State: open - Opened by childers over 5 years ago - 3 comments

#283 - Test if linkouts appear when ENABLE_JBROWSE_INTEGRATION = False

Issue - State: closed - Opened by childers over 5 years ago - 1 comment

#281 - Do we need the sequences table?

Issue - State: open - Opened by childers over 5 years ago - 1 comment

#280 - All feature under manage.py command

Issue - State: open - Opened by deming7h777 over 5 years ago - 3 comments

#277 - Re-written [BLAST query page] by React JS library

Issue - State: open - Opened by r06942072 over 5 years ago - 5 comments

#276 - Scripting access of django databases

Pull Request - State: closed - Opened by deming7h777 over 5 years ago - 24 comments

#273 - [BLAST app] Storage, from results page back to submission page

Issue - State: closed - Opened by r06942072 over 5 years ago - 6 comments

#271 - [BLAST query page] Adding searchBar

Issue - State: closed - Opened by r06942072 over 5 years ago - 5 comments

#263 - Adding blast & hmmer database by script

Issue - State: closed - Opened by deming7h777 over 5 years ago - 7 comments

#259 - Scripting access of django databases

Issue - State: closed - Opened by deming7h777 almost 6 years ago - 6 comments

#257 - add a npm script to clean static files collected by webpack

Pull Request - State: closed - Opened by hsiaoyi0504 almost 6 years ago - 2 comments

#256 - jQuery3.3.1

Pull Request - State: closed - Opened by deming7h777 almost 6 years ago - 15 comments

#255 - Dockerize genomics-workspace

Issue - State: open - Opened by deming7h777 about 6 years ago - 76 comments

#248 - Switch back to default jquery ui CSS

Pull Request - State: closed - Opened by deming7h777 about 6 years ago - 11 comments
Labels: request change

#247 - Replace kendo.js with grid-css in the blast-results page

Issue - State: closed - Opened by deming7h777 about 6 years ago

#243 - BLAST redesign

Issue - State: open - Opened by childers about 6 years ago - 4 comments

#242 - save parameters

Issue - State: open - Opened by childers about 6 years ago - 2 comments

#218 - remove files for old about page

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago - 3 comments
Labels: wait for review

#217 - determine python version on runtime

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago - 2 comments
Labels: wait for review

#216 - create scripts for adding organism, blastdb, hmmerdb

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago - 2 comments
Labels: Doing

#205 - Add support of Python 3

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago - 2 comments
Labels: wait for review

#197 - add xcode9.4 image

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago - 3 comments
Labels: blocked

#129 - remove old virtualenv folder

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago - 8 comments
Labels: wait for review