Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / NAL-i5K/GFF3toolkit issues and pull requests
#138 - No module named 'gff3tool'
Issue -
State: closed - Opened by emilpaulitz 2 months ago
- 2 comments
#137 - gff3_QC error
Issue -
State: open - Opened by Ziwei-Liu 5 months ago
- 3 comments
#136 - Question about gff_merge
Issue -
State: open - Opened by sjtugrc 5 months ago
- 1 comment
#135 - gff3_fix error
Issue -
State: open - Opened by Rhinogradentia 6 months ago
- 2 comments
#134 - Minor fix to create_annotation_summaries_nov21-7.pl for more specific…
Pull Request -
State: closed - Opened by mpoelchau 6 months ago
#133 - fixes to gff3-merge - use id instead of name in replace process
Pull Request -
State: closed - Opened by mpoelchau 6 months ago
#132 - Ncbi pep ids
Pull Request -
State: closed - Opened by mpoelchau 12 months ago
#131 - Extract protein seq
Issue -
State: closed - Opened by bsb2014 about 1 year ago
- 4 comments
#130 - Program gff3_sort encountered an error.
Issue -
State: open - Opened by wjx121 about 1 year ago
#129 - Problem with "gff3_ID_generator.py"
Issue -
State: open - Opened by MesYosra over 1 year ago
- 8 comments
#128 - Error in gff3_fix
Issue -
State: open - Opened by DiegoSafian almost 2 years ago
- 1 comment
#127 - KeyError: 'replace'
Issue -
State: open - Opened by meiyang12 almost 2 years ago
- 6 comments
Labels: bug
#126 - SeqID does not end with a number.
Issue -
State: closed - Opened by tbazilegith about 2 years ago
- 6 comments
#125 - Error when running gff3_ID_generator.py
Issue -
State: closed - Opened by B203712-2021 about 2 years ago
- 4 comments
#124 - inquiry about "gff3_to_fasta -st user_defined -u mRNA CDS"
Issue -
State: open - Opened by yanzhongsino over 2 years ago
- 5 comments
#123 - removing models from a list
Issue -
State: open - Opened by dcopetti over 2 years ago
- 2 comments
#122 - Create test.yml
Pull Request -
State: closed - Opened by ZhiXuanLai almost 3 years ago
- 1 comment
#121 - updated doc formatting
Pull Request -
State: closed - Opened by childers almost 3 years ago
#120 - New phase noerror
Pull Request -
State: closed - Opened by mpoelchau almost 3 years ago
- 1 comment
#119 - Fix phase
Pull Request -
State: closed - Opened by ZhiXuanLai almost 3 years ago
- 1 comment
#118 - gff3_fix error
Issue -
State: closed - Opened by elor77 almost 3 years ago
- 5 comments
#117 - ValueError: max() arg is an empty sequence
Issue -
State: closed - Opened by papelypluma almost 3 years ago
- 3 comments
#116 - Update error levels in gff3_QC according to issue #114
Pull Request -
State: closed - Opened by ZhiXuanLai almost 3 years ago
- 1 comment
#115 - adding dist tage to travis.yml
Pull Request -
State: closed - Opened by childers about 3 years ago
#114 - Update error handling in gff3_QC
Issue -
State: closed - Opened by mpoelchau about 3 years ago
- 4 comments
#113 - Anaconda have something wrong when runing example script
Issue -
State: closed - Opened by Ravenclawer about 3 years ago
- 2 comments
#112 - Debbiedai
Pull Request -
State: closed - Opened by debbiedai about 3 years ago
- 1 comment
#111 - Modified gff3_sort.py and version
Pull Request -
State: closed - Opened by ShangYuChiang over 3 years ago
- 2 comments
#110 - gff3_merge iteritems error
Issue -
State: open - Opened by chklopp over 3 years ago
- 3 comments
#109 - gff3_merge user-defined file option does not work in python 3
Issue -
State: open - Opened by mpoelchau almost 4 years ago
Labels: bug
#108 - can't install
Issue -
State: open - Opened by seaward901 almost 4 years ago
- 9 comments
#107 - gff3_fix error
Issue -
State: closed - Opened by yemao701 about 4 years ago
- 9 comments
#106 - added gzip support for issue#105
Pull Request -
State: closed - Opened by ctcncgr about 4 years ago
- 2 comments
#105 - Add Support for GZIP/BGZIP Compressed Files
Issue -
State: closed - Opened by ctcncgr about 4 years ago
- 3 comments
#104 - Pip install
Issue -
State: closed - Opened by TommySchooner over 4 years ago
- 3 comments
#103 - gff3_fix - problem with split function
Issue -
State: closed - Opened by mpoelchau over 4 years ago
- 1 comment
#102 - Fix problems with md format
Pull Request -
State: closed - Opened by mpoelchau over 4 years ago
- 1 comment
#101 - Modified map fuction
Pull Request -
State: closed - Opened by ShangYuChiang over 4 years ago
- 2 comments
#100 - minor documentation issue: formatting problems in some sections of pdf
Issue -
State: closed - Opened by adf-ncgr over 4 years ago
- 3 comments
#99 - AttributeError: 'NoneType' object has no attribute 'groups'
Issue -
State: open - Opened by lijing28101 over 4 years ago
- 2 comments
#98 - fix to install on macOS Mojave + anaconda
Pull Request -
State: closed - Opened by Juke34 almost 5 years ago
- 4 comments
#97 - Testpy3 rebase
Pull Request -
State: closed - Opened by hsiaoyi0504 almost 5 years ago
- 3 comments
#96 - Testpy3
Pull Request -
State: closed - Opened by ShangYuChiang almost 5 years ago
- 2 comments
#95 - Pytohn3.6
Pull Request -
State: closed - Opened by ShangYuChiang almost 5 years ago
#94 - Convert to python3
Issue -
State: closed - Opened by mpoelchau about 5 years ago
- 1 comment
#93 - Python3.6
Pull Request -
State: closed - Opened by ShangYuChiang about 5 years ago
- 1 comment
#92 - Python3.6
Pull Request -
State: closed - Opened by ShangYuChiang about 5 years ago
#91 - make it compatible to python3 (backup)
Pull Request -
State: closed - Opened by hsiaoyi0504 about 5 years ago
- 1 comment
#90 - finish_argument_non_unique_CDS_IDS
Pull Request -
State: open - Opened by tony006469 about 5 years ago
#89 - install problem in conda env
Issue -
State: open - Opened by thierryjanssens about 5 years ago
- 3 comments
#88 - refactor to make unit testing easier
Issue -
State: closed - Opened by childers about 5 years ago
- 3 comments
Labels: enhancement
#87 - New argument for seqid no number
Pull Request -
State: closed - Opened by tony006469 over 5 years ago
#86 - new_argument_for_seqid_no_number
Pull Request -
State: closed - Opened by tony006469 over 5 years ago
- 1 comment
#85 - error with gff3_sort: missing SeqID
Issue -
State: closed - Opened by lassancejm over 5 years ago
- 8 comments
#84 - uncomment Error code Esf0012
Pull Request -
State: closed - Opened by tony006469 over 5 years ago
#83 - fix broken link in documentation
Pull Request -
State: closed - Opened by mpoelchau over 5 years ago
#82 - Fix bug when gff3 has embedded fasta from sequence modifications
Pull Request -
State: closed - Opened by mpoelchau over 5 years ago
#81 - Problem with statistics output file in gff3_QC
Issue -
State: closed - Opened by mpoelchau over 5 years ago
- 6 comments
#80 - Switch back to gff3-py
Issue -
State: open - Opened by hsiaoyi0504 almost 6 years ago
#79 - make it compatible to python3 (testing)
Pull Request -
State: closed - Opened by hsiaoyi0504 almost 6 years ago
- 1 comment
#78 - Add argument to generate non-unique CDS IDS for a given mRNA parent feature
Issue -
State: closed - Opened by mpoelchau almost 6 years ago
- 8 comments
#77 - Add alias argument, ability to omit merge report
Pull Request -
State: closed - Opened by mpoelchau almost 6 years ago
#76 - Add gff3_ID_generator.py
Pull Request -
State: closed - Opened by mpoelchau almost 6 years ago
#75 - KeyError: 'replace'
Issue -
State: closed - Opened by tiramisutes almost 6 years ago
- 8 comments
#74 - add statistic_file
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#73 - Fix document on readthedocs
Issue -
State: closed - Opened by hsiaoyi0504 about 6 years ago
- 3 comments
#72 - remove old version information that isn't used
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#71 - Update FAQ.md
Pull Request -
State: closed - Opened by deming7h777 about 6 years ago
#70 - add user-defined example files
Pull Request -
State: closed - Opened by dytk2134 about 6 years ago
- 1 comment
Labels: wait_for_review
#69 - import explicitly
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#68 - remove old author and license information
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
- 1 comment
#67 - remove unused imports and codes
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
Labels: wait_for_review
#66 - fix merge report
Pull Request -
State: closed - Opened by dytk2134 about 6 years ago
- 2 comments
#65 - check other documents as well through awesome_bot and fix missing links found
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
- 1 comment
#64 - use awesome_bot to check README.md
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#63 - add a Q&A about "ImportError: No module named wheel.bdist_wheel"
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#62 - remove author list, we will not maintain this
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#61 - single sourcing the version
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
- 2 comments
#60 - Fix wheel issue and bump the version to 1.4.2
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#59 - update installation method for latest version
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#58 - fix README.md on PyPI package
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#57 - fix pip argument flag
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#56 - Move wiki to repo and start using readthedocs
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#55 - change link to up-to-date wiki
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#54 - remove wrong GNU GPL from files
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
- 1 comment
#53 - test pypi installation
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
#52 - Update auto_replace_tag.py
Pull Request -
State: closed - Opened by dytk2134 about 6 years ago
#51 - make remove files from list as a function
Pull Request -
State: closed - Opened by hsiaoyi0504 about 6 years ago
- 1 comment
#50 - fix missing replaced model issue
Pull Request -
State: closed - Opened by dytk2134 about 6 years ago
Labels: wait_for_review
#49 - Update README.md
Pull Request -
State: closed - Opened by dytk2134 about 6 years ago
#48 - Mac support
Pull Request -
State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review
#47 - use cmd_class to customize installation command
Pull Request -
State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review
#46 - remove old APIs
Pull Request -
State: closed - Opened by dytk2134 over 6 years ago
- 1 comment
Labels: wait_for_review
#45 - Remove remaining blast files
Pull Request -
State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review
#44 - add windows into setup.py classifier
Pull Request -
State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review
#43 - Add appveyor
Pull Request -
State: closed - Opened by hsiaoyi0504 over 6 years ago
- 2 comments
#42 - integrate document in gff3tool/lib/gff3_to_fasta/README.md into docs/…
Pull Request -
State: closed - Opened by dytk2134 over 6 years ago
#41 - make GFF3toolkit available on Windows
Pull Request -
State: closed - Opened by dytk2134 over 6 years ago
- 2 comments
#40 - fix_phase - Set the initial phase as 0, if phase missing
Pull Request -
State: closed - Opened by dytk2134 over 6 years ago
#39 - issue656
Pull Request -
State: closed - Opened by dytk2134 over 6 years ago
- 1 comment