Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / NAL-i5K/GFF3toolkit issues and pull requests

#138 - No module named 'gff3tool'

Issue - State: closed - Opened by emilpaulitz 2 months ago - 2 comments

#137 - gff3_QC error

Issue - State: open - Opened by Ziwei-Liu 5 months ago - 3 comments

#136 - Question about gff_merge

Issue - State: open - Opened by sjtugrc 5 months ago - 1 comment

#135 - gff3_fix error

Issue - State: open - Opened by Rhinogradentia 6 months ago - 2 comments

#133 - fixes to gff3-merge - use id instead of name in replace process

Pull Request - State: closed - Opened by mpoelchau 6 months ago

#132 - Ncbi pep ids

Pull Request - State: closed - Opened by mpoelchau 12 months ago

#131 - Extract protein seq

Issue - State: closed - Opened by bsb2014 about 1 year ago - 4 comments

#130 - Program gff3_sort encountered an error.

Issue - State: open - Opened by wjx121 about 1 year ago

#129 - Problem with "gff3_ID_generator.py"

Issue - State: open - Opened by MesYosra over 1 year ago - 8 comments

#128 - Error in gff3_fix

Issue - State: open - Opened by DiegoSafian almost 2 years ago - 1 comment

#127 - KeyError: 'replace'

Issue - State: open - Opened by meiyang12 almost 2 years ago - 6 comments
Labels: bug

#126 - SeqID does not end with a number.

Issue - State: closed - Opened by tbazilegith about 2 years ago - 6 comments

#125 - Error when running gff3_ID_generator.py

Issue - State: closed - Opened by B203712-2021 about 2 years ago - 4 comments

#124 - inquiry about "gff3_to_fasta -st user_defined -u mRNA CDS"

Issue - State: open - Opened by yanzhongsino over 2 years ago - 5 comments

#123 - removing models from a list

Issue - State: open - Opened by dcopetti over 2 years ago - 2 comments

#122 - Create test.yml

Pull Request - State: closed - Opened by ZhiXuanLai almost 3 years ago - 1 comment

#121 - updated doc formatting

Pull Request - State: closed - Opened by childers almost 3 years ago

#120 - New phase noerror

Pull Request - State: closed - Opened by mpoelchau almost 3 years ago - 1 comment

#119 - Fix phase

Pull Request - State: closed - Opened by ZhiXuanLai almost 3 years ago - 1 comment

#118 - gff3_fix error

Issue - State: closed - Opened by elor77 almost 3 years ago - 5 comments

#117 - ValueError: max() arg is an empty sequence

Issue - State: closed - Opened by papelypluma almost 3 years ago - 3 comments

#116 - Update error levels in gff3_QC according to issue #114

Pull Request - State: closed - Opened by ZhiXuanLai almost 3 years ago - 1 comment

#115 - adding dist tage to travis.yml

Pull Request - State: closed - Opened by childers almost 3 years ago

#114 - Update error handling in gff3_QC

Issue - State: closed - Opened by mpoelchau about 3 years ago - 4 comments

#113 - Anaconda have something wrong when runing example script

Issue - State: closed - Opened by Ravenclawer about 3 years ago - 2 comments

#112 - Debbiedai

Pull Request - State: closed - Opened by debbiedai about 3 years ago - 1 comment

#111 - Modified gff3_sort.py and version

Pull Request - State: closed - Opened by ShangYuChiang over 3 years ago - 2 comments

#110 - gff3_merge iteritems error

Issue - State: open - Opened by chklopp over 3 years ago - 3 comments

#109 - gff3_merge user-defined file option does not work in python 3

Issue - State: open - Opened by mpoelchau almost 4 years ago
Labels: bug

#108 - can't install

Issue - State: open - Opened by seaward901 almost 4 years ago - 9 comments

#107 - gff3_fix error

Issue - State: closed - Opened by yemao701 about 4 years ago - 9 comments

#106 - added gzip support for issue#105

Pull Request - State: closed - Opened by ctcncgr about 4 years ago - 2 comments

#105 - Add Support for GZIP/BGZIP Compressed Files

Issue - State: closed - Opened by ctcncgr about 4 years ago - 3 comments

#104 - Pip install

Issue - State: closed - Opened by TommySchooner over 4 years ago - 3 comments

#103 - gff3_fix - problem with split function

Issue - State: closed - Opened by mpoelchau over 4 years ago - 1 comment

#102 - Fix problems with md format

Pull Request - State: closed - Opened by mpoelchau over 4 years ago - 1 comment

#101 - Modified map fuction

Pull Request - State: closed - Opened by ShangYuChiang over 4 years ago - 2 comments

#100 - minor documentation issue: formatting problems in some sections of pdf

Issue - State: closed - Opened by adf-ncgr over 4 years ago - 3 comments

#99 - AttributeError: 'NoneType' object has no attribute 'groups'

Issue - State: open - Opened by lijing28101 over 4 years ago - 2 comments

#98 - fix to install on macOS Mojave + anaconda

Pull Request - State: closed - Opened by Juke34 almost 5 years ago - 4 comments

#97 - Testpy3 rebase

Pull Request - State: closed - Opened by hsiaoyi0504 almost 5 years ago - 3 comments

#96 - Testpy3

Pull Request - State: closed - Opened by ShangYuChiang almost 5 years ago - 2 comments

#95 - Pytohn3.6

Pull Request - State: closed - Opened by ShangYuChiang almost 5 years ago

#94 - Convert to python3

Issue - State: closed - Opened by mpoelchau about 5 years ago - 1 comment

#93 - Python3.6

Pull Request - State: closed - Opened by ShangYuChiang about 5 years ago - 1 comment

#92 - Python3.6

Pull Request - State: closed - Opened by ShangYuChiang about 5 years ago

#91 - make it compatible to python3 (backup)

Pull Request - State: closed - Opened by hsiaoyi0504 about 5 years ago - 1 comment

#90 - finish_argument_non_unique_CDS_IDS

Pull Request - State: open - Opened by tony006469 about 5 years ago

#89 - install problem in conda env

Issue - State: open - Opened by thierryjanssens about 5 years ago - 3 comments

#88 - refactor to make unit testing easier

Issue - State: closed - Opened by childers about 5 years ago - 3 comments
Labels: enhancement

#87 - New argument for seqid no number

Pull Request - State: closed - Opened by tony006469 over 5 years ago

#86 - new_argument_for_seqid_no_number

Pull Request - State: closed - Opened by tony006469 over 5 years ago - 1 comment

#85 - error with gff3_sort: missing SeqID

Issue - State: closed - Opened by lassancejm over 5 years ago - 8 comments

#84 - uncomment Error code Esf0012

Pull Request - State: closed - Opened by tony006469 over 5 years ago

#83 - fix broken link in documentation

Pull Request - State: closed - Opened by mpoelchau over 5 years ago

#82 - Fix bug when gff3 has embedded fasta from sequence modifications

Pull Request - State: closed - Opened by mpoelchau over 5 years ago

#81 - Problem with statistics output file in gff3_QC

Issue - State: closed - Opened by mpoelchau over 5 years ago - 6 comments

#80 - Switch back to gff3-py

Issue - State: open - Opened by hsiaoyi0504 almost 6 years ago

#79 - make it compatible to python3 (testing)

Pull Request - State: closed - Opened by hsiaoyi0504 almost 6 years ago - 1 comment

#78 - Add argument to generate non-unique CDS IDS for a given mRNA parent feature

Issue - State: closed - Opened by mpoelchau almost 6 years ago - 8 comments

#77 - Add alias argument, ability to omit merge report

Pull Request - State: closed - Opened by mpoelchau almost 6 years ago

#76 - Add gff3_ID_generator.py

Pull Request - State: closed - Opened by mpoelchau almost 6 years ago

#75 - KeyError: 'replace'

Issue - State: closed - Opened by tiramisutes almost 6 years ago - 8 comments

#74 - add statistic_file

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#73 - Fix document on readthedocs

Issue - State: closed - Opened by hsiaoyi0504 about 6 years ago - 3 comments

#72 - remove old version information that isn't used

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#71 - Update FAQ.md

Pull Request - State: closed - Opened by deming7h777 about 6 years ago

#70 - add user-defined example files

Pull Request - State: closed - Opened by dytk2134 about 6 years ago - 1 comment
Labels: wait_for_review

#69 - import explicitly

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#68 - remove old author and license information

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago - 1 comment

#67 - remove unused imports and codes

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago
Labels: wait_for_review

#66 - fix merge report

Pull Request - State: closed - Opened by dytk2134 about 6 years ago - 2 comments

#65 - check other documents as well through awesome_bot and fix missing links found

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago - 1 comment

#64 - use awesome_bot to check README.md

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#63 - add a Q&A about "ImportError: No module named wheel.bdist_wheel"

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#62 - remove author list, we will not maintain this

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#61 - single sourcing the version

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago - 2 comments

#60 - Fix wheel issue and bump the version to 1.4.2

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#59 - update installation method for latest version

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#58 - fix README.md on PyPI package

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#57 - fix pip argument flag

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#56 - Move wiki to repo and start using readthedocs

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#55 - change link to up-to-date wiki

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#54 - remove wrong GNU GPL from files

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago - 1 comment

#53 - test pypi installation

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago

#52 - Update auto_replace_tag.py

Pull Request - State: closed - Opened by dytk2134 about 6 years ago

#51 - make remove files from list as a function

Pull Request - State: closed - Opened by hsiaoyi0504 about 6 years ago - 1 comment

#50 - fix missing replaced model issue

Pull Request - State: closed - Opened by dytk2134 about 6 years ago
Labels: wait_for_review

#49 - Update README.md

Pull Request - State: closed - Opened by dytk2134 about 6 years ago

#48 - Mac support

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review

#47 - use cmd_class to customize installation command

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review

#46 - remove old APIs

Pull Request - State: closed - Opened by dytk2134 over 6 years ago - 1 comment
Labels: wait_for_review

#45 - Remove remaining blast files

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review

#44 - add windows into setup.py classifier

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago
Labels: wait_for_review

#43 - Add appveyor

Pull Request - State: closed - Opened by hsiaoyi0504 over 6 years ago - 2 comments

#42 - integrate document in gff3tool/lib/gff3_to_fasta/README.md into docs/…

Pull Request - State: closed - Opened by dytk2134 over 6 years ago

#41 - make GFF3toolkit available on Windows

Pull Request - State: closed - Opened by dytk2134 over 6 years ago - 2 comments

#40 - fix_phase - Set the initial phase as 0, if phase missing

Pull Request - State: closed - Opened by dytk2134 over 6 years ago

#39 - issue656

Pull Request - State: closed - Opened by dytk2134 over 6 years ago - 1 comment