MultiQC/MultiQC issues and pull requests

#100 - Picard MarkDups percent plot by default. Closes #91.

Pull Request - State: closed - Opened by ewels almost 9 years ago

#99 - Option to print to stdout

Pull Request - State: closed - Opened by ewels almost 9 years ago

#98 - Added Py3.5 to travis config.

Pull Request - State: closed - Opened by ewels almost 9 years ago

#97 - Add -o option for stdout

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: core: front end

#96 - self.css and self.js give absolute paths

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: bug: core

#95 - Make a bioconda package

Issue - State: closed - Opened by ewels almost 9 years ago - 5 comments
Labels: core: back end

#94 - Stop changing general stats opacity

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#93 - General Stats: hide empty rows

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#92 - Ditch FastQC Kmer Plot

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: module: change

#91 - Picard MarkDups: percent by default

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: module: change

#90 - Named config saving

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: front end

#89 - General stats header alignment

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: core: front end

#88 - Sorting general stats columns when scrolling doesn't work

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: front end

#87 - Customise HighCharts export button

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: front end

#86 - SnpEff module.

Issue - State: closed - Opened by ewels almost 9 years ago - 3 comments
Labels: module: new

#85 - Plot more things from Qualimap BAM QC

Issue - State: closed - Opened by ewels almost 9 years ago - 5 comments
Labels: module: new

#84 - Exclude sample names at run time

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#83 - Include python setup in documentation.

Issue - State: closed - Opened by ewels almost 9 years ago - 2 comments
Labels: documentation

#82 - bug report from recent run

Issue - State: closed - Opened by avilella almost 9 years ago - 16 comments
Labels: bug: core

#81 - Finish documentation for v0.3

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: documentation

#80 - Add a doesn't match option to toolbox

Issue - State: closed - Opened by ewels almost 9 years ago - 3 comments
Labels: core: front end

#79 - Point release of current master branch?

Issue - State: closed - Opened by avilella almost 9 years ago - 8 comments

#78 - Refactor plotting

Pull Request - State: closed - Opened by ewels almost 9 years ago

#77 - Make -o output directory, -p prefix

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: core: back end

#76 - Plugin hooks

Pull Request - State: closed - Opened by ewels almost 9 years ago

#75 - bismark MultiQC module broke when dedup logs not found

Issue - State: closed - Opened by avilella almost 9 years ago - 4 comments
Labels: bug: core

#74 - bowtie2 module runs for bismark analyses

Issue - State: closed - Opened by avilella almost 9 years ago - 7 comments
Labels: bug: core

#73 - rnaseq report from the qualimap tools

Issue - State: closed - Opened by tomsing1 almost 9 years ago - 3 comments
Labels: module: new

#72 - Error of featureCounts module for paired-end input

Issue - State: closed - Opened by tomsing1 almost 9 years ago - 3 comments
Labels: bug: core

#71 - Child templates, report subdirectories, report asset copying

Pull Request - State: closed - Opened by ewels almost 9 years ago

#70 - calculate_clip_overlap module

Issue - State: closed - Opened by avilella almost 9 years ago - 25 comments
Labels: module: new

#69 - bamutil clipoverlap module

Issue - State: open - Opened by avilella almost 9 years ago - 6 comments
Labels: module: new

#68 - dedup coverage calculations on preseq plot

Issue - State: closed - Opened by avilella almost 9 years ago - 5 comments
Labels: module: change

#67 - feature request: methylQA module

Issue - State: closed - Opened by avilella almost 9 years ago - 13 comments
Labels: module: new

#66 - requiring only first 2 columns in case it is executed in fast mode

Pull Request - State: closed - Opened by avilella almost 9 years ago - 3 comments

#65 - Bulk export charts

Issue - State: closed - Opened by ewels almost 9 years ago - 3 comments
Labels: core: front end

#64 - Don't automatically generate plots if loads of samples

Issue - State: closed - Opened by ewels almost 9 years ago - 2 comments
Labels: core: front end

#63 - Create child templates

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#62 - Preseq

Pull Request - State: closed - Opened by ewels almost 9 years ago

#61 - Share mod data

Pull Request - State: closed - Opened by ewels almost 9 years ago

#60 - General Statistics - Scrolling Header

Issue - State: closed - Opened by Edoardo-Petrini almost 9 years ago - 5 comments
Labels: core: front end

#59 - 3rd party entry points

Pull Request - State: closed - Opened by ewels almost 9 years ago

#58 - Stand-alone HTML

Pull Request - State: closed - Opened by ewels almost 9 years ago

#57 - FastQC refactor

Pull Request - State: closed - Opened by ewels almost 9 years ago - 1 comment

#56 - Make HTML file stand-alone

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#55 - Figure out how to extend with other pip modules

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: core: back end

#54 - Highlight line graphs samples - save doesn't work

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment

#53 - Speed up 'hide samples'

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment

#52 - UX - Made regex switch more obvious

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#51 - FastQC - no original images

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: core: back end

#50 - Remove auto-save feature

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#49 - feature request - preseq lc_extrap curves

Issue - State: closed - Opened by avilella almost 9 years ago - 16 comments
Labels: module: new

#48 - Add a Gitter chat badge to README.md

Pull Request - State: closed - Opened by gitter-badger almost 9 years ago - 1 comment

#47 - FastQ Screen: Different plot if lots of samples

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: module: change

#46 - Add General Stats HTML markup generator to BaseModule

Issue - State: closed - Opened by ewels almost 9 years ago - 5 comments
Labels: core: back end

#45 - adapt log formatter to log level

Pull Request - State: closed - Opened by robinandeer almost 9 years ago - 5 comments

#44 - Multiple directories and More logging

Pull Request - State: closed - Opened by moonso almost 9 years ago - 3 comments

#43 - Module request: bwa-meth

Issue - State: closed - Opened by avilella almost 9 years ago - 1 comment
Labels: module: new, waiting: example data

#42 - Refactored modules

Pull Request - State: closed - Opened by moonso almost 9 years ago - 3 comments

#41 - Allow multiple analysis directories to be given

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#40 - Overwrite click defaults from config

Issue - State: closed - Opened by robinandeer almost 9 years ago - 2 comments
Labels: core: back end

#39 - Updated cli and logging

Pull Request - State: closed - Opened by moonso almost 9 years ago - 8 comments

#38 - feature request - A barplot showing the proportion of bp/reads passing each step of a Methyl NGS pipeline from:

Issue - State: closed - Opened by avilella almost 9 years ago - 4 comments
Labels: module: new

#37 - Highlight toolbox drawers that are active

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#36 - Toolbox - Hide samples regex not saved

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: bug: core

#35 - Toolbox - Clear all option

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#34 - Refactor plotting JavaScript

Issue - State: closed - Opened by ewels almost 9 years ago
Labels: core: back end

#33 - Hide plots if all samples hidden

Issue - State: closed - Opened by ewels almost 9 years ago - 1 comment
Labels: core: back end

#32 - Make general stats table sortable by custom highlight

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment
Labels: core: front end

#31 - General stats table plotting

Issue - State: closed - Opened by ewels about 9 years ago - 2 comments
Labels: core: back end

#30 - Add regex mode for renaming

Issue - State: closed - Opened by ewels about 9 years ago
Labels: core: front end

#29 - Create system for plugin modules to tie into specified hooks

Issue - State: closed - Opened by ewels about 9 years ago - 2 comments
Labels: core: front end

#28 - Suggestion: link samples together?

Issue - State: closed - Opened by alneberg about 9 years ago - 9 comments

#27 - Z-index issue with FastQC sequence quality plot

Issue - State: closed - Opened by robinandeer about 9 years ago - 2 comments
Labels: bug: core

#26 - Toolbox sidebar

Pull Request - State: closed - Opened by ewels about 9 years ago

#25 - Design change: Move tools

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment
Labels: core: back end

#24 - Replace sample names

Pull Request - State: closed - Opened by ewels about 9 years ago

#23 - FastQC: colour plots by status

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment
Labels: core: back end

#22 - Option to export config somehow

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment
Labels: core: back end

#21 - Add 'Key' modal for general stats table colour schemes

Issue - State: closed - Opened by ewels about 9 years ago
Labels: core: back end

#20 - Highlighting changes

Issue - State: closed - Opened by ewels about 9 years ago
Labels: core: back end

#19 - Make General Stats table sortable

Issue - State: closed - Opened by ewels about 9 years ago
Labels: core: back end

#18 - Qualimap - Rest of the plots

Pull Request - State: closed - Opened by guillermo-carrasco about 9 years ago - 2 comments

#17 - Extend FastQC modules

Issue - State: closed - Opened by ewels about 9 years ago - 2 comments
Labels: module: new

#16 - Fastqc reporting doesn't work for me (possibly due to my malpractice)

Issue - State: closed - Opened by alneberg about 9 years ago - 9 comments

#15 - Add to Galaxy

Issue - State: closed - Opened by ewels about 9 years ago - 50 comments
Labels: core: back end

#14 - Input filename line not present in my cutadapt log

Issue - State: closed - Opened by alneberg about 9 years ago - 6 comments
Labels: bug: core

#13 - Add Trimmomatic support

Issue - State: closed - Opened by remiolsen about 9 years ago - 6 comments
Labels: module: new

#12 - Add Picard support

Issue - State: closed - Opened by remiolsen about 9 years ago - 32 comments
Labels: module: new

#11 - Qualimap integration - initial PR

Pull Request - State: closed - Opened by guillermo-carrasco about 9 years ago - 3 comments

#10 - Entry points for 3rd party modules

Issue - State: closed - Opened by robinandeer about 9 years ago - 7 comments
Labels: core: back end

#9 - Add option for prefixing directory name

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment
Labels: core: back end

#8 - Add option to copy original plots

Issue - State: closed - Opened by guillermo-carrasco about 9 years ago - 9 comments

#7 - Add Qualimap support

Issue - State: closed - Opened by ewels about 9 years ago - 11 comments
Labels: module: new

#6 - Add support for SeqControl

Issue - State: closed - Opened by brainstorm about 9 years ago - 3 comments
Labels: module: new, waiting: example data

#5 - Ability to swap names

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment
Labels: core: back end

#4 - Share chroma colour scales in table

Issue - State: closed - Opened by ewels about 9 years ago
Labels: core: front end

#3 - Make modules export all parsed data to big JSON files

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment

#2 - Batch colour sample labels

Issue - State: closed - Opened by ewels about 9 years ago - 1 comment
Labels: core: back end

#1 - Filter visible samples

Issue - State: closed - Opened by ewels about 9 years ago - 2 comments
Labels: core: back end

GitHub / MultiQC/MultiQC issues and pull requests