Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / MultiQC/MultiQC issues and pull requests
#2870 - v1.25: `ColumnMeta` object has no field `group`
Issue -
State: open - Opened by luisas 2 days ago
Labels: custom-content, bug: module
#2869 - pychopper module: add reads stats information
Issue -
State: open - Opened by rabioinf 3 days ago
#2868 - ataqv
Issue -
State: open - Opened by pontushojer 3 days ago
- 1 comment
Labels: module: new
#2867 - V1.25 in conda end up properly but not in the container distributed by biocontainers
Issue -
State: open - Opened by Juke34 3 days ago
- 1 comment
#2866 - BBMap report
Issue -
State: open - Opened by Juke34 3 days ago
- 1 comment
#2865 - Check `add_data_source` args (either `path` or `f` should be specified), use `strict_helpers.lint_error`
Pull Request -
State: closed - Opened by vladsavelyev 4 days ago
Labels: core: refactoring
#2864 - bcl2fastq type hints
Pull Request -
State: closed - Opened by vladsavelyev 4 days ago
#2863 - error
Issue -
State: closed - Opened by sadboy123-sketch 4 days ago
#2862 - Support Python 3.13, drop 3.8
Pull Request -
State: closed - Opened by vladsavelyev 4 days ago
- 1 comment
Labels: core: refactoring
#2861 - CellRanger: Support for CellRanger Multi
Pull Request -
State: open - Opened by Sxmple-DavidSchmidt 4 days ago
- 1 comment
#2860 - Group samples: Minor tweak suggestions
Issue -
State: open - Opened by ewels 5 days ago
#2859 - Generate new screengrabs with rich-codex
Pull Request -
State: closed - Opened by vladsavelyev 5 days ago
- 1 comment
#2858 - Bump v1.25
Pull Request -
State: closed - Opened by vladsavelyev 5 days ago
- 1 comment
#2857 - Add remaining metrics to Picard submodule's `VariantCallingMetrics`
Issue -
State: open - Opened by spaul91 5 days ago
#2856 - Fix FASTQC Per Base Sequence Content plot click when module run multiple times
Pull Request -
State: closed - Opened by vladsavelyev 6 days ago
Labels: bug: module
#2855 - Custom content in general stats table not working
Issue -
State: closed - Opened by quiocarbajal 6 days ago
- 1 comment
Labels: custom-content
#2854 - New module:ngsbits samplegender
Pull Request -
State: open - Opened by peterpru 6 days ago
- 2 comments
#2853 - Improve custom content documentation
Issue -
State: open - Opened by vladsavelyev 6 days ago
- 1 comment
Labels: documentation
#2852 - NanoStat: support multi-sample logs
Pull Request -
State: closed - Opened by vladsavelyev 6 days ago
Labels: module: enhancement
#2851 - Allow `x_band`, `x_lines`, `x_minrange` for any plot type (specifically scatter)
Pull Request -
State: closed - Opened by vladsavelyev 6 days ago
Labels: core: front end
#2850 - Mypy fixes for in plots
Pull Request -
State: closed - Opened by vladsavelyev 6 days ago
#2849 - Custom content minor fixes
Pull Request -
State: closed - Opened by vladsavelyev 6 days ago
- 1 comment
Labels: custom-content
#2848 - Use classes for column/row hiding - fixes hiding in expanded groups
Pull Request -
State: closed - Opened by vladsavelyev 7 days ago
Labels: core: front end
#2847 - Support boxplot in custom content
Pull Request -
State: closed - Opened by vladsavelyev 7 days ago
- 1 comment
Labels: custom-content
#2846 - Add `py.typed` to mark package as providing type information
Pull Request -
State: closed - Opened by vladsavelyev 8 days ago
Labels: core: infrastructure
#2845 - Fix bar plot export from toolbox
Pull Request -
State: closed - Opened by vladsavelyev 8 days ago
Labels: core: front end
#2844 - Fix autoselection in plot export toolbox
Pull Request -
State: closed - Opened by vladsavelyev 8 days ago
Labels: core: front end
#2843 - Barplot Data TSV/CSV Export Missing Sample Names
Issue -
State: closed - Opened by diderote 8 days ago
- 1 comment
Labels: core: front end
#2842 - Add a py.typed file for downstream plugins to use MultiQC's type annotations
Issue -
State: closed - Opened by ccwang002 8 days ago
- 1 comment
Labels: core: infrastructure
#2841 - Fix replace_samples for custom content genstats table
Pull Request -
State: closed - Opened by vladsavelyev 8 days ago
Labels: custom-content
#2840 - Samtools coverage: suppot `exclude_contigs` and `include_contigs`
Pull Request -
State: closed - Opened by vladsavelyev 8 days ago
- 2 comments
Labels: module: enhancement
#2839 - Boxplots for custom content
Issue -
State: closed - Opened by JohannesKersting 8 days ago
- 2 comments
Labels: custom-content
#2838 - Ganon: support non-verbose output, fix missing `removed with --min-count`
Pull Request -
State: closed - Opened by vladsavelyev 8 days ago
Labels: module: enhancement
#2837 - Remove `pyaml_env` dependency and apply the fix for the `SyntaxWarning`
Pull Request -
State: closed - Opened by vladsavelyev 9 days ago
#2836 - Run plot export in threads with a time out and handle freezes
Pull Request -
State: closed - Opened by vladsavelyev 10 days ago
Labels: core: back end
#2835 - Custom data for many samples as barplot
Issue -
State: closed - Opened by jd3234 11 days ago
- 1 comment
Labels: asking-for-help
#2834 - fastp: support `--merged` flag
Pull Request -
State: closed - Opened by vladsavelyev 11 days ago
Labels: module: enhancement
#2833 - More type hinting
Pull Request -
State: closed - Opened by vladsavelyev 11 days ago
Labels: core: refactoring
#2832 - Standardise doc titles
Pull Request -
State: closed - Opened by christopher-hakkaart 13 days ago
#2831 - Add sample-grouping docs
Pull Request -
State: closed - Opened by vladsavelyev 13 days ago
- 2 comments
Labels: documentation
#2830 - Fix hiding columns for grouped samples
Pull Request -
State: closed - Opened by vladsavelyev 13 days ago
#2829 - Fix copy multiqc.log into multiqc_data output folder
Pull Request -
State: closed - Opened by vladsavelyev 14 days ago
Labels: bug: core
#2828 - When both `contents` and `contents_re` are specified in a search patterns, treat it as logical AND
Pull Request -
State: closed - Opened by vladsavelyev 14 days ago
- 1 comment
Labels: core: back end
#2827 - Modify UMICollapse module to support FastQ mode.
Pull Request -
State: closed - Opened by MatthiasZepper 15 days ago
- 3 comments
Labels: module: enhancement
#2826 - Fastp module lacks on after trimming represention when fastp command runs with the `-m/--merge` option
Issue -
State: closed - Opened by Daniel-VM 16 days ago
- 4 comments
Labels: waiting: example data, module: enhancement
#2825 - Kraken2 report identified as Bracken
Issue -
State: open - Opened by marchoeppner 16 days ago
- 1 comment
Labels: waiting: response
#2824 - TMB
Issue -
State: open - Opened by bounlu 16 days ago
Labels: module: new
#2823 - Picard: fix parsing Sentieon IS metrics
Pull Request -
State: closed - Opened by vladsavelyev 16 days ago
Labels: bug: module
#2819 - Wrap exporting flat plots in try-catch
Pull Request -
State: closed - Opened by vladsavelyev 17 days ago
Labels: core: back end
#2814 - Add UMICollapse module
Pull Request -
State: closed - Opened by siddharthab 17 days ago
- 5 comments
Labels: module: new, waiting: example data
#2812 - nf-core pipeline crashes when using quay.io/biocontainers/multiqc > v1.21
Issue -
State: open - Opened by kedhammar 17 days ago
- 1 comment
Labels: core: back end
#2810 - FastQC: Incorrect mean average sequence length reported after trimming
Issue -
State: closed - Opened by TBradley27 18 days ago
- 2 comments
Labels: bug: module
#2809 - Pydantic errors with new AnchorT type
Issue -
State: closed - Opened by Sxmple-DavidSchmidt 19 days ago
- 6 comments
#2806 - Unable to generate `multiqc.log` file despite `--no-clean-up`
Issue -
State: closed - Opened by jfy133 24 days ago
- 1 comment
Labels: bug: core
#2805 - Ganon: support output w/o `--verbose`, fix for missing `removed with --min-count` line
Issue -
State: closed - Opened by jfy133 24 days ago
- 4 comments
Labels: bug: module
#2803 - Fix the WebAssembly runner https://multiqc.info/run runner
Issue -
State: closed - Opened by vladsavelyev 24 days ago
- 2 comments
Labels: priority: high, core: infrastructure
#2802 - samtools coverage: add include/exclude contigs option
Issue -
State: closed - Opened by matthdsm 24 days ago
- 2 comments
Labels: module: enhancement
#2801 - Kraken not being added to multiqc report after going from 1.23 to 1.24.1
Issue -
State: closed - Opened by nschcolnicov 24 days ago
- 2 comments
Labels: bug: module
#2795 - Config file seemingly not being respected
Issue -
State: closed - Opened by stkgo about 1 month ago
- 1 comment
Labels: bug: core
#2794 - Group read pairs in general stats
Pull Request -
State: closed - Opened by vladsavelyev about 1 month ago
- 5 comments
Labels: core: back end
#2791 - FastQC: fix positioning plot status labels when custom anchors set
Pull Request -
State: closed - Opened by vladsavelyev about 1 month ago
- 1 comment
Labels: bug: module
#2790 - FastQC: use interval start instead of average for plots with bp as X axis
Pull Request -
State: closed - Opened by vladsavelyev about 1 month ago
Labels: module: enhancement
#2788 - Freyja: handle empty input, deterministic sample order
Pull Request -
State: closed - Opened by vladsavelyev about 1 month ago
Labels: bug: module, module: enhancement
#2787 - Heatmap: allow numeric `xcats` and `ycats`
Pull Request -
State: closed - Opened by vladsavelyev about 1 month ago
- 1 comment
Labels: custom-content
#2786 - Fix for Python 3.8
Pull Request -
State: closed - Opened by vladsavelyev about 1 month ago
#2783 - Fix configuring `extra_fn_clean_exts` and `fn_clean_exts` conflict with each other
Pull Request -
State: closed - Opened by jchorl about 1 month ago
- 1 comment
Labels: bug: core
#2764 - samtools stats incorrect reporting when omitting duplicates
Issue -
State: closed - Opened by pdimens about 1 month ago
- 11 comments
Labels: waiting: example data
#2746 - [module] GATK/DepthOfCoverage
Issue -
State: open - Opened by adamrtalbot about 1 month ago
Labels: module: new
#2742 - sentieon/qualcal
Issue -
State: open - Opened by adamrtalbot about 2 months ago
- 4 comments
Labels: module: new
#2729 - Improved docs on multiqc.get_plot for sections with subsections
Issue -
State: closed - Opened by nick-youngblut about 2 months ago
- 1 comment
#2667 - 1.22.3 Hanging in MacOS Docker, in nf-core/rnaseq
Issue -
State: open - Opened by pinin4fjords 3 months ago
- 18 comments
Labels: core: back end
#2608 - incorporating CollectRnaSeqMetrics output in report
Issue -
State: open - Opened by MSaadfarooq 4 months ago
- 5 comments
Labels: bug: core, waiting: example data
#2533 - Interactive usage: additive `multiqc.parse_logs()` sample parsing
Issue -
State: open - Opened by vladsavelyev 5 months ago
Labels: core: back end
#2518 - Faster JSON dumping.
Issue -
State: open - Opened by rhpvorderman 5 months ago
- 1 comment
Labels: core: back end
#2507 - Add ngs-bits SampleGender output to MultiQC
Issue -
State: open - Opened by peterpru 5 months ago
- 1 comment
Labels: module: new
#2467 - Custom data grouping into different subtabs
Issue -
State: open - Opened by jdcla 6 months ago
Labels: custom-content
#2417 - Stylize "Percentages" and "Log10" buttons as toggles
Issue -
State: open - Opened by tamuanand 7 months ago
- 6 comments
Labels: core: front end
#2367 - Add a "box plot" view to the line plot
Issue -
State: open - Opened by vladsavelyev 7 months ago
Labels: core: front end
#2206 - Use `self.anchor` to prepend plot IDs to make sure custom anchor is applied
Pull Request -
State: open - Opened by vladsavelyev 10 months ago
- 2 comments
Labels: core: back end, WIP
#2103 - Request module for cellranger multi
Issue -
State: open - Opened by pcm32 12 months ago
- 3 comments
Labels: module: new
#2076 - Dynamically use `self.anchor` for plots' and sections' IDs
Issue -
State: open - Opened by sstrong99 12 months ago
- 4 comments
Labels: core: back end, breaking change
#1953 - Scatter plot "xPlotBands" and "yPlotBands" do not render in the correct order if custom "data_labels" are provided
Issue -
State: closed - Opened by buijt about 1 year ago
- 1 comment
Labels: bug: core, core: front end, priority: low
#1946 - new module: sincei
Pull Request -
State: open - Opened by vivekbhr about 1 year ago
- 11 comments
Labels: module: new
#1893 - Restructure config scopes
Issue -
State: open - Opened by ewels over 1 year ago
Labels: core: back end
#1892 - JSON Schema for MultiQC config
Issue -
State: open - Opened by ewels over 1 year ago
Labels: core: back end
#1875 - Custom data + replace-names looses data
Issue -
State: closed - Opened by karl-az over 1 year ago
Labels: custom-content, bug: module
#1784 - MultiQC 2024 tracker
Issue -
State: open - Opened by ewels almost 2 years ago
Labels: core: back end, core: front end
#1748 - Jinja2: bump minimum version
Issue -
State: open - Opened by danarte about 2 years ago
- 3 comments
Labels: core: back end
#1743 - multiqc not detecting some samtools output files
Issue -
State: closed - Opened by tamuanand about 2 years ago
- 5 comments
Labels: asking-for-help
#1698 - Update template to latest Bootstrap (with dark mode)
Issue -
State: open - Opened by jfy133 over 2 years ago
- 7 comments
Labels: core: front end, priority: low
#1678 - Blacken docs code snippets
Issue -
State: open - Opened by ewels over 2 years ago
Labels: documentation
#1630 - NanoStat: Parse file from NanoComp with multiple samples
Issue -
State: closed - Opened by schorlton over 2 years ago
- 4 comments
Labels: module: change
#1513 - Add bbsplit histograms
Pull Request -
State: open - Opened by klkeys about 3 years ago
- 3 comments
Labels: WIP, module: enhancement
#1303 - New Module: HTStream
Pull Request -
State: open - Opened by bnjenner almost 4 years ago
- 12 comments
Labels: module: new
#1256 - Create standardised intermediate files
Issue -
State: open - Opened by ewels about 4 years ago
- 1 comment
Labels: core: back end
#1182 - Atropos
Pull Request -
State: open - Opened by jdidion over 4 years ago
- 11 comments
Labels: module: new, waiting: changes, waiting: response
#1102 - Make FastQC's sequence-content plots a shared plot-type
Issue -
State: open - Opened by bnbowman over 4 years ago
- 2 comments
Labels: core: front end, priority: low
#576 - new group_samples() function
Pull Request -
State: closed - Opened by ewels about 7 years ago
- 10 comments
Labels: core: back end, awaits-review
#542 - Group samples: merge summary stats
Issue -
State: open - Opened by ewels about 7 years ago
- 18 comments
Labels: core: back end, core: front end, priority: high
#454 - Heatmap dendrogram
Pull Request -
State: open - Opened by ewels over 7 years ago
Labels: core: front end