Ecosyste.ms: Issues

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GitHub / Mr-Milk/SpatialTis issues and pull requests

#43 - read_images calculating mean expression of bounding box, not cell?

Issue - State: open - Opened by bswhite 5 months ago - 2 comments

#42 - Update dependency setuptools to v74

Pull Request - State: open - Opened by renovate[bot] 5 months ago

#41 - Update dependency setuptools to v73 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] 6 months ago

#40 - Update dependency setuptools to v72 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] 6 months ago

#39 - Update dependency setuptools to v71 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] 7 months ago

#38 - Update docker/build-push-action action to v6

Pull Request - State: open - Opened by renovate[bot] 8 months ago

#37 - Update dependency setuptools to v70 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] 9 months ago

#36 - Update codecov/codecov-action action to v4

Pull Request - State: open - Opened by renovate[bot] about 1 year ago

#35 - Update dependency setuptools to v69 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago

#34 - Update actions/setup-python action to v5

Pull Request - State: open - Opened by renovate[bot] about 1 year ago

#33 - Version 0.6.0

Issue - State: open - Opened by liuyangzzu about 1 year ago - 1 comment

#32 - Update docker/metadata-action action to v5

Pull Request - State: open - Opened by renovate[bot] over 1 year ago

#31 - Update docker/login-action action to v3

Pull Request - State: open - Opened by renovate[bot] over 1 year ago

#30 - Update docker/build-push-action action to v5 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] over 1 year ago

#29 - Update actions/checkout action to v4

Pull Request - State: open - Opened by renovate[bot] over 1 year ago

#28 - Update docker/build-push-action action to v4 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] almost 2 years ago

#27 - errors

Issue - State: closed - Opened by jamesMo84 almost 2 years ago - 4 comments

#26 - Update actions/setup-python action to v4

Pull Request - State: closed - Opened by renovate[bot] over 2 years ago

#25 - Update codecov/codecov-action action to v3.1.6

Pull Request - State: open - Opened by renovate[bot] almost 3 years ago - 1 comment

#24 - Update codecov/codecov-action action to v3

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago

#23 - Update python Docker tag to v3.12

Pull Request - State: open - Opened by renovate[bot] almost 3 years ago - 1 comment

#22 - IO for Spatial Coordination

Issue - State: closed - Opened by Mr-Milk almost 3 years ago

#21 - `sp.cell_components` incorrect number on the plot

Issue - State: closed - Opened by Mr-Milk almost 3 years ago
Labels: bug

#20 - `sp.cell_map` inconsistent cell type color between ROI

Issue - State: closed - Opened by Mr-Milk almost 3 years ago

#19 - Update actions/checkout action to v3 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#18 - Update actions/setup-python action to v3 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#17 - Dependency Dashboard

Issue - State: open - Opened by renovate[bot] almost 3 years ago

#16 - Update codecov/codecov-action action to v2

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#15 - Update codecov/codecov-action action to v1.5.2 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#14 - Configure Renovate

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#13 - Bump h5py from 2.10.0 to 3.3.0

Pull Request - State: closed - Opened by dependabot-preview[bot] over 3 years ago - 1 comment
Labels: dependencies

#12 - Support visium data

Issue - State: closed - Opened by Mr-Milk over 3 years ago
Labels: enhancement

#11 - spatial co-expression might use too many resource in transcriptome data

Issue - State: closed - Opened by Mr-Milk over 3 years ago - 2 comments

#10 - EXP_OBS failed when type are not str

Issue - State: closed - Opened by Mr-Milk over 3 years ago

#9 - [Security] Bump jinja2 from 2.11 to 3.0.1

Pull Request - State: closed - Opened by dependabot-preview[bot] over 3 years ago - 2 comments
Labels: dependencies, security

#8 - Bump jinja2 from 2.11 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#7 - Preprocessing to handle cell shape and centroid

Issue - State: closed - Opened by Mr-Milk over 3 years ago - 1 comment

#6 - Better handle of centroid and neighbors information in AnnData

Issue - State: closed - Opened by Mr-Milk almost 4 years ago - 2 comments
Labels: enhancement

#5 - Bump h5py from 2.10.0 to 3.2.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 2 comments
Labels: dependencies

#4 - Bump h5py from 2.10.0 to 3.2.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#3 - Bump h5py from 2.10.0 to 3.1.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#2 - Update h5py requirement from <=2.10.0 to <3.2.0

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 1 comment
Labels: dependencies

#1 - Create Dependabot config file

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 1 comment
Labels: dependencies