Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MouseLand/suite2p issues and pull requests

#1050 - Newio

Pull Request - State: closed - Opened by carsen-stringer over 1 year ago - 1 comment

#1049 - Multi channel ome.tif files as input - data shuffled between channels

Issue - State: open - Opened by bdudok over 1 year ago
Labels: enhancement

#1048 - BUG: Having trouble reading the nwb files

Issue - State: closed - Opened by R7anZ7 over 1 year ago - 3 comments

#1047 - Fix use of dataclasses for python 3.11

Pull Request - State: open - Opened by simon-ball over 1 year ago - 7 comments

#1046 - Mac M2 chip, issue with scanimage-tiff-reader

Issue - State: open - Opened by andrestrocyte over 1 year ago - 2 comments
Labels: dependencies

#1045 - FEATURE: Extract signal from manual segmentation via ImageJ

Issue - State: closed - Opened by just-meng over 1 year ago - 1 comment

#1044 - Question about the number of frames after reading by suite2p.io.BinaryFile

Issue - State: closed - Opened by PikaPei over 1 year ago - 2 comments

#1043 - BUG: <Please write a comprehensive title after the 'BUG: ' prefix>

Issue - State: closed - Opened by kmahe1 over 1 year ago - 4 comments

#1042 - checking h5py key to open binaries before data_path

Pull Request - State: closed - Opened by arielleleon over 1 year ago - 9 comments

#1041 - BUG: data_path key is checked even if h5py is supplied

Issue - State: closed - Opened by arielleleon over 1 year ago - 2 comments

#1040 - BUG: Gives me the following error when I try to run a tiff file on suite2p

Issue - State: closed - Opened by kyesther00 over 1 year ago - 3 comments

#1038 - ROI information in suite2p numpy array?

Issue - State: closed - Opened by Eddymorphling over 1 year ago - 1 comment

#1037 - Reading .sbx files with GUI

Issue - State: closed - Opened by kirstyngrams over 1 year ago - 2 comments

#1036 - FEATURE: generate ROI.zip compatible with imageJ from segmented cells

Issue - State: open - Opened by brian1000 over 1 year ago - 5 comments

#1030 - Docs classifier update

Pull Request - State: closed - Opened by landoskape over 1 year ago - 2 comments

#1029 - Fixing bug in checking whether the ROIs_on checkbox is checked

Pull Request - State: closed - Opened by landoskape over 1 year ago - 1 comment

#1028 - BUG: Toggling ROIs off and on with spacebar causes a QGraphicsScene issue

Issue - State: closed - Opened by landoskape over 1 year ago - 13 comments

#1026 - BUG: An error occurred while trying to save to mat by using GUI

Issue - State: closed - Opened by chunyueli over 1 year ago - 3 comments

#1024 - BUG: KeyError: "'ndx-ellipse-eye-tracking' not a namespace"

Issue - State: closed - Opened by rcpeene over 1 year ago - 3 comments

#1021 - BUG: Merged ROIs not saving in stat.npy in GUI

Issue - State: closed - Opened by yrleftbrain over 1 year ago - 2 comments

#1020 - Exporting ROI as an image in GUI

Issue - State: open - Opened by Eddymorphling over 1 year ago
Labels: enhancement

#1019 - How to opt out of non-rigid registration?

Issue - State: closed - Opened by shclair over 1 year ago - 1 comment

#1017 - FEATURE: Draw non-ellipse manual ROIs in GUI

Issue - State: open - Opened by yrleftbrain over 1 year ago - 1 comment

#1016 - Installation issue: "Could not load the Qt platform"

Issue - State: closed - Opened by doleduke over 1 year ago - 2 comments

#1015 - Fix numerous typos using codespell

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 4 comments

#1014 - adding pyqt6 and switching to qtpy

Pull Request - State: closed - Opened by carsen-stringer over 1 year ago - 2 comments

#1012 - BUG: Module not found: sbxreader

Issue - State: closed - Opened by rcpeene over 1 year ago - 1 comment

#1011 - BUG: Registration module - 'suite2p.io' has no attribute 'BinaryRWFile'

Issue - State: closed - Opened by ronfinn over 1 year ago - 3 comments

#1010 - Error trying to open GUI after fresh install on Windows 10

Issue - State: closed - Opened by outlace over 1 year ago - 3 comments

#1009 - Update installation instructions for Macs, min version of rastermap

Pull Request - State: closed - Opened by rly over 1 year ago - 4 comments

#1008 - Addresses doc issues and package issues

Pull Request - State: closed - Opened by chriski777 over 1 year ago

#1007 - <Please write a comprehensive title.>

Issue - State: closed - Opened by IbrahimLab-23 over 1 year ago - 5 comments

#1006 - codespell: add config and action to codespell the code to avoid known typos

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 4 comments

#1005 - BUG: pyqt fails to load on fresh installation when no conda pyqt isn't installed

Issue - State: closed - Opened by oraby over 1 year ago - 2 comments

#1004 - Re-add connected to GUI options

Pull Request - State: closed - Opened by hmacomber over 1 year ago - 1 comment

#1002 - How to load stim trace in suite2p?

Issue - State: closed - Opened by Yang-xu328 over 1 year ago - 2 comments

#999 - Error with rastermap.mapping

Issue - State: closed - Opened by harshidapancholi over 1 year ago - 5 comments

#997 - BUG: oasis batches cells, not frames

Issue - State: open - Opened by RandallJEllis over 1 year ago

#993 - deconvL0 decay time issue

Issue - State: open - Opened by MM-DRIVE over 1 year ago

#991 - DOC: Save_Path0 is not actually a list

Issue - State: closed - Opened by NathanielH-snek over 1 year ago

#990 - DOC: How does one retrieve ncells and image distortion

Issue - State: closed - Opened by loganPasternak67854 over 1 year ago - 2 comments

#989 - io issue when using on a server. Cannot find h5 files

Issue - State: closed - Opened by milesOIST over 1 year ago - 10 comments

#988 - DOC: GUI integration with SLURM

Issue - State: open - Opened by gmaggi over 1 year ago

#986 - Details regarding processing multiple tiff files

Issue - State: closed - Opened by PrasannaKumaran over 1 year ago - 7 comments

#984 - FEATURE: Use processed suite2p output to run registration only

Issue - State: open - Opened by horsto over 1 year ago - 2 comments

#983 - Error with Compute Z-Position function

Issue - State: open - Opened by kdc14641 over 1 year ago

#982 - Help optimizing bouton detection

Issue - State: open - Opened by brendavasquez over 1 year ago

#981 - add scanimage-tiff-reader as a dependency again

Issue - State: closed - Opened by carsen-stringer over 1 year ago

#979 - BUG: <Error in create_neuropil_basis>

Issue - State: closed - Opened by Gery111 over 1 year ago - 3 comments

#977 - ROIs with Values of 0 Over All Frames

Issue - State: open - Opened by jmdelahanty over 1 year ago - 2 comments

#976 - Implement rotation of manual ROIs

Pull Request - State: closed - Opened by amorsi1 over 1 year ago - 1 comment

#975 - FEATURE: Multi channel data processing for h5 files

Issue - State: open - Opened by zoltanhock over 1 year ago - 1 comment

#974 - tifffile Errors Logged with tifffile.read_uic_tag in ome.tif

Issue - State: closed - Opened by jmdelahanty over 1 year ago - 2 comments

#973 - BUG: Running suite2p interrupted (no file/directory found)

Issue - State: closed - Opened by marytunun over 1 year ago - 5 comments

#971 - Upgrade fails due to `Cannot uninstall 'llvmlite'` error

Issue - State: closed - Opened by zelunw over 1 year ago - 1 comment

#970 - FEATURE: Return X Y matrix of ROI mask to visualize morphology across days

Issue - State: closed - Opened by neurovanlin over 1 year ago - 3 comments

#969 - :bug: Improving the compatibility of saving TIF files

Pull Request - State: closed - Opened by Achuan-2 over 1 year ago - 9 comments

#968 - Update README.md

Pull Request - State: closed - Opened by carsen-stringer over 1 year ago

#967 - Dev

Pull Request - State: closed - Opened by carsen-stringer over 1 year ago - 1 comment

#966 - merge main into dev

Pull Request - State: closed - Opened by carsen-stringer over 1 year ago

#965 - Visualisation issues in the ROI window after running detection

Issue - State: closed - Opened by MARGINMB over 1 year ago - 2 comments

#964 - merging ROIs based on correlation and spatial constraints

Issue - State: closed - Opened by irinamarguerita almost 2 years ago - 1 comment

#963 - DOC: For non-neuronal cells, should the deconvolved output be disregarded?

Issue - State: closed - Opened by RandallJEllis almost 2 years ago - 3 comments

#962 - Dev

Pull Request - State: closed - Opened by carsen-stringer almost 2 years ago - 1 comment

#961 - Dev

Pull Request - State: closed - Opened by carsen-stringer almost 2 years ago - 1 comment

#960 - BUG: rangeslider issues on mac

Issue - State: open - Opened by carsen-stringer almost 2 years ago
Labels: GUI

#959 - BUG: Cannot load processed data into GUI after running suite2p

Issue - State: closed - Opened by Acnowlogia almost 2 years ago - 2 comments

#958 - Dependency and GUI updates

Pull Request - State: closed - Opened by chriski777 almost 2 years ago - 2 comments

#957 - Installation error: Failed to build scanimage-tiff-reader

Issue - State: closed - Opened by Elsword016 almost 2 years ago - 1 comment

#955 - FEATURE: Allow loading MESc files with image data

Issue - State: closed - Opened by zoltanhock almost 2 years ago - 1 comment

#954 - BUG: sparse detection not available via GUI

Issue - State: closed - Opened by nspiller almost 2 years ago - 1 comment

#953 - BUG: GUI not displaying any images or data visualisation

Issue - State: closed - Opened by scientist-in-pain almost 2 years ago - 2 comments

#952 - BUG: Error with extracting manually drawn ROIs in multiplane/combined image file

Issue - State: closed - Opened by pbokiniec almost 2 years ago - 1 comment

#951 - FEATURE: Add .nd2 input format in the GUI

Issue - State: closed - Opened by BptGrm almost 2 years ago - 1 comment

#950 - installation error about scanimage-tiff-reader

Issue - State: closed - Opened by HuijeongJeong almost 2 years ago - 7 comments

#948 - BUG: Error when ROI Detection is started

Issue - State: closed - Opened by maristanye almost 2 years ago - 2 comments

#947 - issue with Qt setting DPI awareness info

Issue - State: open - Opened by apostolideslab almost 2 years ago - 5 comments

#946 - ScanImage TiffReader not able to read the sample data

Issue - State: closed - Opened by marytunun almost 2 years ago - 1 comment

#945 - ROI not detected on Fish

Issue - State: closed - Opened by bdshaw37 almost 2 years ago - 1 comment