Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MouseLand/suite2p issues and pull requests

#1152 - Modifying .npy outputs to reload into GUI

Issue - State: open - Opened by katereinhart 7 days ago

#1151 - Fix File Path Handling for Usernames with Spaces

Pull Request - State: open - Opened by felixsmli about 1 month ago

#1149 - New s2p version cannot handle lists of h5 files

Issue - State: open - Opened by oterocoronel about 2 months ago

#1148 - BUG: Bruker input using Ch2 only.

Issue - State: open - Opened by LABell2842 about 2 months ago

#1146 - Dummy PR for review

Pull Request - State: open - Opened by Zachary-Ip about 2 months ago

#1144 - Registration metrics do not exclude bad frames

Issue - State: open - Opened by samupicard 3 months ago - 1 comment

#1143 - BUG: Merge ROI not working

Issue - State: open - Opened by ycYiwei 3 months ago

#1142 - Menu bar in GUI is invisible

Issue - State: open - Opened by Mengya-W 3 months ago - 1 comment

#1141 - Error in GUI - Space in Users name

Issue - State: closed - Opened by AMlsct 3 months ago - 1 comment

#1138 - BUG: Suite2P gui not saving update to NWB file

Issue - State: open - Opened by JohnStout 4 months ago

#1131 - BUG: Large OME.TIFF files not registering

Issue - State: open - Opened by nhanford199 5 months ago

#1129 - Merging to newest version

Pull Request - State: closed - Opened by tbabola 5 months ago

#1128 - Issues with installation of suite2p

Issue - State: open - Opened by GiangTranHU 5 months ago - 8 comments

#1127 - BUG: Value error after manual labelling extraction

Issue - State: open - Opened by Nique19351 5 months ago - 1 comment

#1123 - ValueError: operands could not be broadcast together with shapes

Issue - State: closed - Opened by C57B6J 6 months ago - 1 comment

#1122 - Bug fix for python 3.11 and over

Pull Request - State: open - Opened by calebshibu 6 months ago - 1 comment

#1120 - functional segmentation of GCaMP8m

Issue - State: open - Opened by ftomaska 7 months ago

#1119 - initial implementation of isxd reading

Pull Request - State: closed - Opened by ludovicbellier 7 months ago

#1118 - Imaging with Fluo-4

Issue - State: open - Opened by marytunun 7 months ago

#1116 - FEATURE: ROI registration and interpretation of

Issue - State: open - Opened by eunjoy21 7 months ago - 1 comment

#1115 - FEATURE: ROI registration

Issue - State: open - Opened by eunjoy21 8 months ago - 1 comment

#1112 - force integer value for `np.arange` when indexing h5 file with 4D and 5D data

Pull Request - State: open - Opened by knowblesse 8 months ago - 1 comment

#1111 - BUG: Can not handle an h5 file with 5D data structure

Issue - State: open - Opened by knowblesse 8 months ago - 3 comments

#1106 - Update zalign.py

Pull Request - State: closed - Opened by liadJB 9 months ago

#1105 - Error when run ops file

Issue - State: closed - Opened by KKroba 9 months ago - 4 comments

#1104 - Don't show ROIS in main screen

Issue - State: closed - Opened by KKroba 9 months ago - 3 comments

#1103 - BUG: error when running suite2p

Issue - State: closed - Opened by Monodia97 9 months ago - 2 comments

#1101 - BUG: error in anatomical detection using cellpose 3

Issue - State: closed - Opened by nguyemi5 9 months ago - 1 comment

#1100 - support for dcimg

Pull Request - State: closed - Opened by nguyemi5 9 months ago - 1 comment

#1099 - Deconvolution for RGECO neuronal signal

Issue - State: open - Opened by ZiTao956 9 months ago

#1098 - FEATURE: operating extraction on cropped region

Issue - State: closed - Opened by jingxuanf0214 9 months ago - 2 comments

#1097 - Bug: Merge ROIs duplicates

Issue - State: open - Opened by sdaste 9 months ago

#1094 - BUG: Unable to extract dendritic ROIs

Issue - State: open - Opened by seethakris 9 months ago

#1093 - TypeError: model_path() in rungui.py on newly installed suite2p

Issue - State: closed - Opened by IreneP19 9 months ago - 5 comments

#1088 - BUG: Access to the DATA.bin file is denied

Issue - State: closed - Opened by mkzhou00 10 months ago

#1087 - BUG: Error with registration/ROI extraction

Issue - State: open - Opened by kyesther00 10 months ago

#1086 - support roi extraction of 2-channel data in GUI

Pull Request - State: closed - Opened by itsb 10 months ago - 1 comment

#1084 - BUG: manual ROI extraction error

Issue - State: closed - Opened by EunJungHwang 10 months ago - 2 comments

#1080 - BUG: Error finding H5 files (correction included)

Issue - State: open - Opened by scottcanoe 10 months ago

#1079 - Two bugs related to zcorr processing

Issue - State: open - Opened by liadJB 10 months ago

#1079 - Two bugs related to zcorr processing

Issue - State: open - Opened by liadJB 10 months ago

#1078 - BUG: module 'suite2p' has no attribute 'default_ops'

Issue - State: open - Opened by ronfinn 10 months ago

#1078 - BUG: module 'suite2p' has no attribute 'default_ops'

Issue - State: closed - Opened by ronfinn 10 months ago - 2 comments

#1076 - Manual labeling issues

Issue - State: open - Opened by Kojot1444 11 months ago - 5 comments

#1073 - Unexpected effect of sampling rate of segmentation

Issue - State: open - Opened by maxseppo 12 months ago

#1072 - Extract ROI from the second channel

Issue - State: closed - Opened by Ayetheint 12 months ago - 1 comment

#1071 - BUG: Suite2p trouble on rendering the GUI at Ubuntu20.04

Issue - State: closed - Opened by Kim-HaYeon 12 months ago - 1 comment

#1069 - Added support for Thorlabs RAW files (io.raw)

Pull Request - State: closed - Opened by yael-prilutski 12 months ago - 1 comment

#1065 - Arielleleon bug pull from defined h5py

Pull Request - State: closed - Opened by carsen-stringer 12 months ago - 1 comment

#1064 - BUG: can't initialize new run, unrecognized arguments error in __main__.py

Issue - State: closed - Opened by vickerse1 12 months ago - 11 comments

#1063 - ROIs not showing

Issue - State: closed - Opened by mtvrdic1 12 months ago - 13 comments

#1060 - Docs badge leads to cellpose docs

Issue - State: closed - Opened by darikoneil about 1 year ago

#1058 - Fluorescence signal is all 0

Issue - State: closed - Opened by scshen19 about 1 year ago

#1057 - Qt6 CheckState Fix for Windows Users

Pull Request - State: closed - Opened by landoskape about 1 year ago - 2 comments

#1056 - Docs Classifier Update

Pull Request - State: closed - Opened by landoskape about 1 year ago - 2 comments

#1054 - BUG: why no ROIs are labeled after data processing

Issue - State: closed - Opened by yduxx about 1 year ago - 5 comments

#1052 - Saving motion corrected registered video

Issue - State: closed - Opened by Ayetheint about 1 year ago - 5 comments

#1050 - Newio

Pull Request - State: closed - Opened by carsen-stringer about 1 year ago - 1 comment

#1049 - Multi channel ome.tif files as input - data shuffled between channels

Issue - State: open - Opened by bdudok about 1 year ago
Labels: enhancement

#1048 - BUG: Having trouble reading the nwb files

Issue - State: closed - Opened by R7anZ7 about 1 year ago - 3 comments

#1047 - Fix use of dataclasses for python 3.11

Pull Request - State: open - Opened by simon-ball about 1 year ago - 7 comments

#1046 - Mac M2 chip, issue with scanimage-tiff-reader

Issue - State: open - Opened by andrestrocyte about 1 year ago - 2 comments
Labels: dependencies

#1045 - FEATURE: Extract signal from manual segmentation via ImageJ

Issue - State: closed - Opened by just-meng about 1 year ago - 1 comment

#1044 - Question about the number of frames after reading by suite2p.io.BinaryFile

Issue - State: closed - Opened by PikaPei about 1 year ago - 2 comments

#1043 - BUG: <Please write a comprehensive title after the 'BUG: ' prefix>

Issue - State: closed - Opened by kmahe1 about 1 year ago - 4 comments