MouseLand/cellpose-napari issues and pull requests

#55 - [maint] Fix CI (GitHub actions workflow and tox.ini)

Pull Request - State: open - Opened by psobolewskiPhD 15 days ago - 1 comment

#54 - Right click no-hold painting, ctrl+left click fast delete

Pull Request - State: open - Opened by kephale about 1 month ago - 13 comments

#53 - [FEATURE] Training Cellpose models in napari

Issue - State: open - Opened by YitengDang 3 months ago - 1 comment
Labels: enhancement

#52 - Cell counting

Pull Request - State: closed - Opened by ErikSkare 3 months ago

#51 - removed `net_avg` parameter from model call and widget

Pull Request - State: open - Opened by jo-mueller 6 months ago - 1 comment

#50 - TypeError: eval() got an unexpected keyword argument 'net_avg'

Issue - State: closed - Opened by LeungKamdayjat 7 months ago - 7 comments

#49 - napari 4.19 cellpose installation issue

Issue - State: open - Opened by danidean 8 months ago - 1 comment

#48 - [FEATURE] add channel_axis and z_axis to widget

Issue - State: open - Opened by manerotoni 11 months ago - 3 comments
Labels: enhancement

#47 - 4D stack segmentation appears smashed at the top of the image.

Issue - State: closed - Opened by TroySeman about 1 year ago - 1 comment

#46 - [Maint] Fix tox.ini (XAUTHORITY on new line) to fix tests

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago - 1 comment

#45 - Update README.md

Pull Request - State: closed - Opened by sebherbert over 1 year ago - 1 comment

#44 - Cellpose model detections are not the same in Cellpose-napari plug in

Issue - State: closed - Opened by TroySeman over 1 year ago - 1 comment

#43 - cellpose-napari crashes when running segmentation on Mac

Issue - State: closed - Opened by christinab12 over 1 year ago - 3 comments

#42 - Cell segmentation XYZ coordinates export

Issue - State: closed - Opened by alfonsecard almost 2 years ago - 1 comment

#41 - `get_masks` interface changed from cellpose 1.x to 2.x

Issue - State: closed - Opened by aeisenbarth almost 2 years ago - 3 comments

#40 - Extend test timeouts (mostly for macOS)

Pull Request - State: closed - Opened by psobolewskiPhD about 2 years ago

#39 - Remove copy-pasta error

Pull Request - State: closed - Opened by psobolewskiPhD about 2 years ago - 2 comments

#38 - Bugfix: pass image_layer.scale to the newly created layers

Pull Request - State: closed - Opened by psobolewskiPhD about 2 years ago - 3 comments

#37 - CellPose Napari plugin does not consider scale of original layer

Issue - State: closed - Opened by sebi06 about 2 years ago - 2 comments

#36 - Napari crashes when opening images after the plugin has been opened

Issue - State: closed - Opened by zoccoler about 2 years ago - 2 comments

#35 - Update test action based on latest cookiecutter and tweak tests

Pull Request - State: closed - Opened by psobolewskiPhD about 2 years ago - 14 comments

#34 - Set `process_3D` checkbox based on image_layer.ndim

Pull Request - State: open - Opened by psobolewskiPhD about 2 years ago - 2 comments

#33 - Feature: Add basic progress indicator & activity info

Pull Request - State: open - Opened by psobolewskiPhD about 2 years ago - 5 comments

#32 - FIx Windows OpenGL test failure

Pull Request - State: closed - Opened by psobolewskiPhD over 2 years ago - 2 comments

#31 - Check image size and set `process stack as 3D`

Issue - State: open - Opened by psobolewskiPhD over 2 years ago - 1 comment

#30 - Swap 3D sample from ZCYZ to CZYX

Pull Request - State: closed - Opened by psobolewskiPhD over 2 years ago - 2 comments

#29 - Fix `logger` error for cellpose>0.7.2 by using `logging`

Pull Request - State: closed - Opened by psobolewskiPhD over 2 years ago - 3 comments

#28 - Set upper bound on cellpose to 0.7.2

Pull Request - State: closed - Opened by psobolewskiPhD over 2 years ago - 7 comments

#27 - Downloading models takes a long time with no visual indicator in napari

Issue - State: open - Opened by psobolewskiPhD over 2 years ago - 5 comments
Labels: enhancement

#26 - CellPose-napari and TensorFlow

Issue - State: closed - Opened by samueljrosen over 2 years ago - 1 comment

#25 - Failed to build numba opencv-python-headless

Issue - State: closed - Opened by emoebel over 2 years ago - 1 comment

#24 - cellpose napari with jupyter notebook

Issue - State: open - Opened by Erwan67 over 2 years ago

#23 - ROI manager compatible output for ImageJ/Fiji

Issue - State: closed - Opened by Minarazagh over 2 years ago - 2 comments

#22 - Exclude tests from packaged files

Pull Request - State: closed - Opened by jaimergp over 2 years ago

#21 - Problem with cellpose-napari (logger import error)

Issue - State: closed - Opened by camcaminin9 over 2 years ago - 5 comments

#20 - Error when trying to run segmentation

Issue - State: closed - Opened by edelaserna over 2 years ago - 4 comments

#19 - Update repo for npe2 support

Pull Request - State: closed - Opened by tlambert03 over 2 years ago - 2 comments

#18 - add categories and preview page

Pull Request - State: closed - Opened by chili-chiu almost 3 years ago - 1 comment

#17 - ResolvePackageNotFound:

Issue - State: closed - Opened by Taitai6521 almost 3 years ago - 2 comments

#16 - Reduce GPU mem usuage

Pull Request - State: closed - Opened by sbinnee almost 3 years ago - 3 comments

#15 - fixing CI

Pull Request - State: closed - Opened by tlambert03 almost 3 years ago - 3 comments

#14 - fixes Github URL

Pull Request - State: closed - Opened by neuromusic almost 3 years ago

#13 - small updates for magicgui 0.3.0

Pull Request - State: closed - Opened by tlambert03 almost 3 years ago - 1 comment

#12 - segmentation ends with `tuple index out of range`

Issue - State: closed - Opened by Czaki almost 3 years ago - 2 comments

#11 - Import qtpy instead of forcing PyQt5

Pull Request - State: closed - Opened by sbinnee about 3 years ago - 1 comment

#10 - Problem running on a stack or folder of multiple images (tuple index out of range)

Issue - State: closed - Opened by babo989 about 3 years ago - 3 comments

#9 - [FEATURE] Segmentation on 4D stacks

Issue - State: open - Opened by rdemets about 3 years ago - 2 comments
Labels: enhancement

#8 - export/save 3D mask do not work

Issue - State: open - Opened by matfallet about 3 years ago

#7 - cellpose-napari on an offline workstation

Issue - State: closed - Opened by haesleinhuepf about 3 years ago - 1 comment

#6 - Retrieve cells coordinates after segmentation

Issue - State: closed - Opened by Tomaubier about 3 years ago - 1 comment

#5 - Error after installing

Issue - State: closed - Opened by mafsousa about 3 years ago - 2 comments

#4 - Delay importing cellpose

Pull Request - State: closed - Opened by sbinnee about 3 years ago - 3 comments

#3 - Fix tests

Pull Request - State: closed - Opened by tlambert03 about 3 years ago

#2 - Error Installing Cellpose-Napari

Issue - State: closed - Opened by hljoyce over 3 years ago - 1 comment

#1 - adds "Framework :: napari" trove classifier

Pull Request - State: closed - Opened by neuromusic over 3 years ago - 1 comment

GitHub / MouseLand/cellpose-napari issues and pull requests