Ecosyste.ms: Issues

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GitHub / MouseLand/Kilosort issues and pull requests

#660 - BUG: Kilosort3 output isn't deterministic

Issue - State: closed - Opened by naterenegar 10 months ago - 3 comments
Labels: Kilosort3

#659 - Release notes for version 4.0.3

Issue - State: closed - Opened by gkBCCN 10 months ago - 2 comments

#658 - Questions about the probe creation tool

Issue - State: closed - Opened by 18702505250 10 months ago - 3 comments

#657 - Kilosort 3.0 detecting too few clusters on 4-shank data

Issue - State: closed - Opened by msj220001 10 months ago - 4 comments
Labels: Kilosort3

#655 - Kilosort4 running very slow

Issue - State: closed - Opened by claudio1212 10 months ago - 2 comments

#654 - incorrect waveforms channels

Issue - State: closed - Opened by Lorena-J 10 months ago - 7 comments

#653 - Pytorch library error

Issue - State: closed - Opened by Lorena-J 10 months ago - 13 comments
Labels: bug

#652 - Problems with 4-shanks probes

Issue - State: closed - Opened by Lorena-J 10 months ago - 3 comments

#651 - BUG: Error when using --filename in command line

Issue - State: closed - Opened by AntonioST 10 months ago - 1 comment

#650 - BUG: Kilosort 3.0 not loading configFile384.m automatically

Issue - State: closed - Opened by msj220001 10 months ago - 4 comments
Labels: Kilosort3

#649 - Kilosort 4 - Creating a Probe

Issue - State: closed - Opened by ckdc2000 10 months ago - 2 comments

#648 - FEATURE: Add more documentation to source code for spike sorting steps

Issue - State: open - Opened by jacobpennington 10 months ago
Labels: todo, docs

#647 - Memory problem of Kilosort

Issue - State: closed - Opened by jnjnnjzch 10 months ago - 4 comments

#646 - Jacob/amplitudes

Pull Request - State: closed - Opened by jacobpennington 10 months ago - 1 comment

#645 - BUG: Negative timestamps generated by KS4

Issue - State: closed - Opened by h21ak9 10 months ago - 5 comments

#643 - Jacob/pc features

Pull Request - State: closed - Opened by jacobpennington 10 months ago

#642 - FEATURE: DIY guide to improve the results of Kilosort

Issue - State: open - Opened by marius10p 10 months ago
Labels: enhancement, docs

#641 - FEATURE: multishank capabilities

Issue - State: closed - Opened by marius10p 10 months ago - 7 comments
Labels: enhancement, multishank

#640 - FEATURE: make a drift-corrected binary file for Phy

Issue - State: closed - Opened by marius10p 10 months ago - 1 comment
Labels: enhancement, forPhy

#639 - FEATURE: PC features for Phy

Issue - State: closed - Opened by marius10p 10 months ago - 3 comments
Labels: enhancement, forPhy

#638 - Final clustering step takes very long time with very high CPU usage

Issue - State: closed - Opened by NirvikNU 10 months ago - 4 comments

#637 - BUG: Unable to run Kilosort after fresh install

Issue - State: closed - Opened by h21ak9 10 months ago - 1 comment

#636 - Docs update

Pull Request - State: closed - Opened by jacobpennington 10 months ago - 1 comment

#635 - BUG: wrong dminx calculated for the Neuropixels probe

Issue - State: closed - Opened by AntonioST 10 months ago - 4 comments

#634 - Sorting comparison between 2.5 and 4

Issue - State: closed - Opened by PadmasolaGuru 10 months ago - 2 comments

#633 - Kilosort Parameters

Issue - State: closed - Opened by PadmasolaGuru 10 months ago - 7 comments

#632 - BUG: Kilosort4 saves amp and Amplitude values by changing them.

Issue - State: closed - Opened by hoyeon912 10 months ago - 2 comments
Labels: forPhy

#631 - Kilosort takes extremely long to sort 4-shank Neuropixel recording

Issue - State: closed - Opened by guidomeijer 10 months ago - 2 comments

#630 - Kilosort4 takes a lot of time to do the sorting

Issue - State: closed - Opened by Lorena-J 10 months ago - 12 comments

#629 - How to resolve NaNs and/or zeroes present in weights for spikedetect.run?

Issue - State: closed - Opened by NirvikNU 10 months ago - 4 comments

#628 - Temporal alignment of channels in Neuropixels recordings

Issue - State: closed - Opened by florgf88 11 months ago - 4 comments

#627 - BUG: Error based on probe settings

Issue - State: closed - Opened by MFalappa 11 months ago - 2 comments

#625 - Error when loading data tpye float32

Issue - State: closed - Opened by AnnaB27 11 months ago - 7 comments

#623 - BUG: filtered signal and prediction not aligned properly in v3.0.1 GUI

Issue - State: closed - Opened by teristam 11 months ago - 8 comments

#622 - Channel map for neuronexus probe Kilosort 4

Issue - State: closed - Opened by ckdc2000 11 months ago - 10 comments

#621 - Does KS4 output temp_wh.dat file?

Issue - State: closed - Opened by hemant22 11 months ago - 3 comments

#620 - Does KS4 output temp_wh.dat file

Issue - State: closed - Opened by hemant22 11 months ago

#619 - spikes found with KS2.0 but not with KS4

Issue - State: closed - Opened by JesusJBallesteros 11 months ago - 6 comments

#618 - having difficulty converting .ncs file to .bin

Issue - State: closed - Opened by fffllllxxxxxxxx 11 months ago - 8 comments

#617 - Value Error never found suitable channels

Issue - State: closed - Opened by Neuronanc 11 months ago - 12 comments

#616 - BUG: phy gives IndexError and phy can run when the same data is sorted in Kilosort 2.0

Issue - State: closed - Opened by tiburona 11 months ago - 2 comments
Labels: forPhy

#615 - Running kilosort4: Error 403 "Forbidden"

Issue - State: closed - Opened by AnnaB27 11 months ago - 7 comments

#614 - Issues Getting Kilosort To Run

Issue - State: closed - Opened by MaLab24 11 months ago

#613 - INSTALLATION: <Please write a comprehensive title.>

Issue - State: closed - Opened by MarcoUniPr 11 months ago - 5 comments

#612 - BUG: wrong time

Issue - State: closed - Opened by tiramica 11 months ago - 1 comment

#611 - Does template extraction assume a topological order in the binary file?

Issue - State: closed - Opened by naterenegar 11 months ago - 2 comments

#610 - Kernel size problem running kilosort4

Issue - State: closed - Opened by alejoss30 11 months ago - 9 comments

#609 - warnings when running pytest

Issue - State: closed - Opened by WeissShahaf 11 months ago - 2 comments

#608 - BUG: ValueError: Maximum allowed size exceeded

Issue - State: closed - Opened by tiburona 11 months ago - 3 comments

#607 - Kilosort 2.5 vs Kilosort 4 on uint16 data

Issue - State: closed - Opened by Lathomas42 11 months ago - 11 comments
Labels: multishank

#605 - BUG: OE 384 chan recordings are not loaded properly in the GUI

Issue - State: closed - Opened by FernandoSn 11 months ago - 3 comments

#604 - BUG: Unable to load output from Kilosort4 into Phy

Issue - State: closed - Opened by h21ak9 11 months ago - 7 comments

#603 - Second run saves output in wrong results directory

Issue - State: closed - Opened by abisi 11 months ago - 4 comments

#602 - INSTALLATION: Kilosort expects a module named `torch`

Issue - State: closed - Opened by tiburona 11 months ago - 2 comments

#601 - QWidget: Must construct a QApplication before a QWidget

Issue - State: closed - Opened by parviz-gh 11 months ago - 23 comments

#600 - INSTALLATION: Using pdm

Issue - State: closed - Opened by ChauhanT 11 months ago - 2 comments

#599 - Jacob/typecast spike removal

Pull Request - State: closed - Opened by jacobpennington 11 months ago

#598 - BuG: Re: spike holes

Issue - State: closed - Opened by WeissShahaf 11 months ago - 4 comments

#597 - INSTALLATION: no Qt platform plugin

Issue - State: closed - Opened by janinaf 11 months ago - 5 comments

#596 - moving docs into folder

Pull Request - State: closed - Opened by carsen-stringer 11 months ago

#594 - Spike holes: Spikes within the batching edges are not detected

Issue - State: closed - Opened by GaelleChapuis 11 months ago - 41 comments

#592 - error in running phy

Issue - State: closed - Opened by m-rastgari 12 months ago

#591 - Issues Setting Up GUI

Issue - State: closed - Opened by lowpez22 12 months ago

#590 - Not enough input arguments error in Matlab

Issue - State: closed - Opened by ShivaniBITS25 12 months ago

#589 - Channel map issues

Issue - State: closed - Opened by jessiburd 12 months ago

#588 - Output matrices from Kilosort 3

Issue - State: closed - Opened by MarcoUniPr 12 months ago

#587 - Output matrices from Kilosort2 not showing spikes

Issue - State: closed - Opened by ckdc2000 12 months ago

#586 - Kilosort 2 linear 16x1 channel map for neuronexus probe

Issue - State: closed - Opened by ckdc2000 12 months ago

#585 - time resolved SNR / residuals

Issue - State: closed - Opened by panichem about 1 year ago

#583 - Seeking Help with Channel Disabling

Issue - State: closed - Opened by kermit000000 about 1 year ago

#582 - Kilosort error: Error using gpuArray/unique

Issue - State: closed - Opened by IrisvandenHeuvel about 1 year ago

#581 - Extracting waveforms but not sure how to get cluster ID

Issue - State: closed - Opened by Coglet00 about 1 year ago

#578 - Kilosort: 'Error using indexing'

Issue - State: closed - Opened by pantelisantonoudiou about 1 year ago - 2 comments

#577 - Can not use drift correction kilosort3

Issue - State: closed - Opened by WWL606 about 1 year ago - 2 comments

#575 - EIG did not converge (for Utah array data)

Issue - State: closed - Opened by liz-ok about 1 year ago - 1 comment

#574 - 1!

Issue - State: closed - Opened by smri07 about 1 year ago

#573 - Error running eMouse

Issue - State: closed - Opened by yc4440 over 1 year ago

#572 - Error running eMouse

Issue - State: closed - Opened by jonathan-columbiau over 1 year ago

#571 - Error saving data for phy! Unrecognized field name "Wphy"

Issue - State: closed - Opened by Tianyulied over 1 year ago - 3 comments

#570 - Choose which GPU to run Kilosort

Issue - State: closed - Opened by AntonioST over 1 year ago

#568 - Template of all NaNs

Issue - State: closed - Opened by lukebun over 1 year ago

#567 - issue with whitening when electrode locations are duplicated

Issue - State: closed - Opened by magland over 1 year ago - 1 comment

#566 - should handle case of no isolated spikes found in a batch

Issue - State: closed - Opened by magland over 1 year ago

#565 - Make NchanTOT, n_chan_bin required settings

Issue - State: closed - Opened by jacobpennington over 1 year ago

#564 - Get around channel map adjacency bias?

Issue - State: closed - Opened by robisonwr over 1 year ago

#563 - NPX 1.0 tetrode channel map

Issue - State: closed - Opened by chris-angeloni over 1 year ago - 1 comment

#562 - Kilosort3 returns units with 0 spikes after sorting

Issue - State: closed - Opened by steevelaquitaine over 1 year ago

#560 - Little fix for 'eig did not converge' crash (Kilosort 2.0)

Pull Request - State: closed - Opened by DradeAW over 1 year ago - 3 comments