Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MouseLand/Kilosort issues and pull requests

#858 - BUG: Memory accumulation over the first 30 minutes of runtime

Issue - State: open - Opened by ryan-budde 4 days ago - 2 comments

#857 - BUG: Hard-coded value for filter length?

Issue - State: open - Opened by nikhilchandra 8 days ago - 1 comment

#856 - How to identify which channel(s) have spike detected?

Issue - State: closed - Opened by erinadreno 10 days ago - 2 comments

#854 - FEATURE: Adding Neuropixels 2.0 probe .mat file

Issue - State: closed - Opened by STuoX 15 days ago - 3 comments

#851 - Updates to PR 844

Pull Request - State: closed - Opened by jacobpennington 16 days ago

#849 - FEATURE: 3-dimensional probe layout

Issue - State: closed - Opened by j-moore94 17 days ago - 2 comments

#847 - BUG: <KS4 double counting spikes>

Issue - State: open - Opened by adgibson3 17 days ago - 1 comment

#846 - Spike sorting with data from tungsten microwire arrays

Issue - State: open - Opened by jeonghyeon0park 29 days ago - 3 comments

#845 - Cluster contamination when there are fast firing events

Issue - State: open - Opened by wufan0504 29 days ago - 11 comments

#844 - Exposing Cf amplitude in st[:,3]

Pull Request - State: closed - Opened by ryan-ressmeyer about 1 month ago - 1 comment

#843 - Jacob/working changes

Pull Request - State: closed - Opened by jacobpennington about 1 month ago

#842 - FEATURE: Kilosort output isolation score of units

Issue - State: closed - Opened by NirvikNU about 1 month ago - 1 comment

#841 - About the channel number in the neuropixel

Issue - State: closed - Opened by TokSakruMai about 1 month ago - 2 comments

#840 - Why am I unable to detect spikes and only noise?

Issue - State: open - Opened by Auxcy1ene about 2 months ago - 16 comments

#839 - Added support for MPS (Apple metal) GPU

Pull Request - State: open - Opened by michaelbarkasi about 2 months ago - 1 comment

#838 - QUESTION: Does nt always have to be an odd number?

Issue - State: closed - Opened by nikhilchandra about 2 months ago - 1 comment

#837 - Sorter output from kilosort2.5 and kilosort4 have different shape.

Issue - State: closed - Opened by MingChingChiang about 2 months ago - 1 comment

#836 - BUG: Unrecognized Settings

Issue - State: open - Opened by Mia-LF about 2 months ago - 1 comment

#836 - BUG: Unrecognized Settings

Issue - State: closed - Opened by Mia-LF about 2 months ago - 1 comment

#835 - INSTALLATION: <kilosort.data_tools not in the environment>

Issue - State: closed - Opened by yxl95 about 2 months ago - 4 comments

#834 - FEATURE: mps support

Issue - State: closed - Opened by michaelbarkasi about 2 months ago - 7 comments

#833 - Discrepancy between templates and actual waveforms

Issue - State: open - Opened by teresajurado about 2 months ago - 6 comments

#832 - IO function for loading ops.npy at different operation system

Issue - State: closed - Opened by Tevin-yue about 2 months ago - 7 comments

#831 - Parameters for Cambridge Neurotech Acute 32-channel probe on kilosort4

Issue - State: closed - Opened by AmaliaLambertRinguet about 2 months ago - 5 comments

#830 - BUG: <no spikes detected with 4*4 distand probes>

Issue - State: closed - Opened by liqun2017 about 2 months ago - 6 comments

#829 - Unable to Move Processed Files After run_kilosort Execution

Issue - State: closed - Opened by Andrea3v about 2 months ago - 3 comments

#827 - Fix split cluster branch

Pull Request - State: closed - Opened by jacobpennington about 2 months ago

#827 - Fix split cluster branch

Pull Request - State: closed - Opened by jacobpennington about 2 months ago

#826 - Limiting spikes to single shank & non-standard channel maps

Issue - State: closed - Opened by JazlynnXM-Tan about 2 months ago - 5 comments

#825 - FEATURE: how to get the channel ID of the spike

Issue - State: closed - Opened by Pineandgrass about 2 months ago - 1 comment

#824 - BUG: no spikes found with 2D MEA data

Issue - State: closed - Opened by annakennedy132 about 2 months ago - 3 comments

#823 - BUG: Excessive RAM usage on large file

Issue - State: closed - Opened by VValentina86 2 months ago - 1 comment

#822 - temporally align channels for SpikeGLX neuropixel data

Issue - State: closed - Opened by xiaoxiong2n 2 months ago - 2 comments

#821 - Question: Running KS4 on PC with multiple GPUs

Issue - State: closed - Opened by nikhilchandra 2 months ago - 1 comment

#820 - Problem in interepreting Drift_scatter.png

Issue - State: closed - Opened by davrubino 2 months ago - 2 comments

#819 - BUG: log file still open after run_kilosort

Issue - State: closed - Opened by j-moore94 2 months ago - 2 comments

#818 - Question on computing spike location across kilosort versions

Issue - State: closed - Opened by JoeZiminski 3 months ago - 3 comments

#817 - Kilosort2: Input matrix contains NaN or Inf

Issue - State: closed - Opened by zetonew 3 months ago - 1 comment

#816 - UnboundLocalError：local variable 'xy' referenced before assignment

Issue - State: closed - Opened by zetonew 3 months ago - 2 comments

#815 - Whitening filter removing spikes

Issue - State: open - Opened by gjin239 3 months ago - 30 comments

#814 - Issue installing Phy

Issue - State: closed - Opened by rajagopalana 3 months ago - 2 comments

#813 - Batch size

Issue - State: closed - Opened by hiroyukioya 3 months ago - 5 comments

#812 - BUG: <Please replace this text with a comprehensive title>

Issue - State: closed - Opened by MrbioDT 3 months ago - 2 comments

#811 - Run spike sorting on multiple files from the same session

Issue - State: open - Opened by PiezaKake 3 months ago - 4 comments
Labels: enhancement

#810 - RuntimeError and UnboundLocalError

Issue - State: closed - Opened by karmenrai2 3 months ago - 7 comments

#809 - Made 3 important hidden parameters visible to the user

Pull Request - State: closed - Opened by naterenegar 3 months ago - 4 comments

#808 - Unrecognized Settings Error

Issue - State: closed - Opened by karmenrai2 3 months ago - 1 comment

#807 - Slow drift tracking and correction

Issue - State: closed - Opened by Tingchen-G 3 months ago - 12 comments

#805 - OSerror when trying save preprocessed copy in kilosort4

Issue - State: closed - Opened by kingsEffy 3 months ago - 3 comments

#804 - Question: How to get template waveform for each spike?

Issue - State: closed - Opened by chris-angeloni 3 months ago - 2 comments

#802 - Update README.md

Pull Request - State: closed - Opened by marius10p 3 months ago

#801 - BUG: Odd merging behavior

Issue - State: closed - Opened by Lathomas42 3 months ago - 4 comments

#799 - Made probe key error more informative

Pull Request - State: closed - Opened by jacobpennington 4 months ago

#798 - Added log statements to debug overflow

Pull Request - State: closed - Opened by jacobpennington 4 months ago

#797 - update issue_715 branch

Pull Request - State: closed - Opened by jacobpennington 4 months ago

#796 - Jacob/split time clustering

Pull Request - State: closed - Opened by jacobpennington 4 months ago

#795 - Probe layout for Neuropixels 1.0

Issue - State: closed - Opened by PiezaKake 4 months ago - 3 comments

#794 - BUG: <Suddenly exited.>

Issue - State: closed - Opened by Tan-Lao 4 months ago - 12 comments

#793 - Update installation files to newer format

Issue - State: open - Opened by jacobpennington 4 months ago
Labels: enhancement

#792 - Question about 'nearest_chans' parameter

Issue - State: closed - Opened by rachelmcassidy 4 months ago - 3 comments

#791 - FEATURE: Will traces view from KS3 be making a return?

Issue - State: closed - Opened by cgallimore25 4 months ago - 1 comment

#790 - BUG: Drift Correction when using capacitance-based lickometer

Issue - State: closed - Opened by pstarski 4 months ago - 4 comments

#789 - rez data

Issue - State: closed - Opened by Lorena-J 4 months ago - 1 comment

#788 - Improved messaging for missing binary file

Pull Request - State: closed - Opened by tabedzki 5 months ago

#787 - Multiple Issues After Running KS4

Issue - State: closed - Opened by EmmaCondon 5 months ago - 18 comments

#786 - fix logger when running in a for loop

Pull Request - State: closed - Opened by RobertoDF 5 months ago - 1 comment

#785 - MEA data for spike sorting

Issue - State: closed - Opened by Lime-y 5 months ago - 5 comments

#784 - Discussion: Update logging to allow end-user logging level

Issue - State: closed - Opened by tabedzki 5 months ago - 13 comments
Labels: enhancement

#783 - Question: No good spike clusters sorted

Issue - State: closed - Opened by Hobart10 5 months ago - 7 comments

#782 - BUG: PCA features zero values on relevant channels

Issue - State: closed - Opened by ckwalters 5 months ago - 2 comments

#780 - BUG: <How to assign a better setting based on the probe map>

Issue - State: closed - Opened by Alchemist-Y 5 months ago - 11 comments

#779 - FEATURE: Support very long chronic recordings

Issue - State: closed - Opened by alejoe91 5 months ago - 2 comments

#778 - about Kilosort4

Issue - State: closed - Opened by bxy666666 5 months ago - 3 comments

#775 - Improve memory management in clustering_qr.kmeans_plusplus

Pull Request - State: open - Opened by RobertoDF 5 months ago - 17 comments

#774 - clustering_qr.kmeans_plusplus explicit tensors deletion

Pull Request - State: closed - Opened by RobertoDF 5 months ago - 1 comment

#773 - clustering_qr.kmeans_plusplus explicit tensors deletion

Pull Request - State: closed - Opened by RobertoDF 5 months ago

#772 - [HELP] peak to trough time

Issue - State: closed - Opened by Lorena-J 5 months ago - 2 comments

#769 - Extracting Cluster Spiketimes

Issue - State: closed - Opened by AidanFishenden 5 months ago - 8 comments

#768 - Confirming Proper Use

Issue - State: closed - Opened by AidanFishenden 5 months ago - 2 comments

#767 - Slow running speed

Issue - State: closed - Opened by Tingchen-G 5 months ago - 13 comments

#766 - BUG: <Crash of Kilosort and/or computer during first clustering>

Issue - State: closed - Opened by ttmysd70c6f5 5 months ago - 21 comments

#764 - GPU question

Issue - State: closed - Opened by HWWiggins 5 months ago - 1 comment

#763 - Creating a tuning curve using spike cluster and spike time data

Issue - State: closed - Opened by AidanFishenden 5 months ago - 2 comments

#762 - BUG: Kilosort3 Phy output has a wrong map if chanMap is not the default value

Issue - State: closed - Opened by Jialiang-Lu 6 months ago - 2 comments
Labels: Kilosort3

#761 - Update basic_example.ipynb

Pull Request - State: closed - Opened by zhang3xing1 6 months ago