Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MouseLand/Kilosort issues and pull requests

#809 - Made 3 important hidden parameters visible to the user

Pull Request - State: open - Opened by naterenegar 5 days ago

#808 - Unrecognized Settings Error

Issue - State: closed - Opened by karmenrai2 6 days ago - 1 comment

#807 - Slow drift tracking and correction

Issue - State: open - Opened by Tingchen-G 11 days ago - 3 comments

#805 - OSerror when trying save preprocessed copy in kilosort4

Issue - State: open - Opened by kingsEffy 11 days ago - 3 comments

#804 - Question: How to get template waveform for each spike?

Issue - State: closed - Opened by chris-angeloni 15 days ago - 2 comments

#802 - Update README.md

Pull Request - State: closed - Opened by marius10p 16 days ago

#801 - BUG: Odd merging behavior

Issue - State: closed - Opened by Lathomas42 16 days ago - 4 comments

#799 - Made probe key error more informative

Pull Request - State: closed - Opened by jacobpennington 25 days ago

#798 - Added log statements to debug overflow

Pull Request - State: closed - Opened by jacobpennington 25 days ago

#797 - update issue_715 branch

Pull Request - State: closed - Opened by jacobpennington 25 days ago

#796 - Jacob/split time clustering

Pull Request - State: closed - Opened by jacobpennington 26 days ago

#795 - Probe layout for Neuropixels 1.0

Issue - State: closed - Opened by PiezaKake 27 days ago - 3 comments

#794 - BUG: <Suddenly exited.>

Issue - State: open - Opened by Tan-Lao about 1 month ago - 10 comments

#793 - Update installation files to newer format

Issue - State: open - Opened by jacobpennington about 1 month ago
Labels: enhancement

#792 - Question about 'nearest_chans' parameter

Issue - State: closed - Opened by rachelmcassidy about 1 month ago - 3 comments

#791 - FEATURE: Will traces view from KS3 be making a return?

Issue - State: closed - Opened by cgallimore25 about 1 month ago - 1 comment

#790 - BUG: Drift Correction when using capacitance-based lickometer

Issue - State: open - Opened by pstarski about 2 months ago - 4 comments

#789 - rez data

Issue - State: closed - Opened by Lorena-J about 2 months ago - 1 comment

#788 - Improved messaging for missing binary file

Pull Request - State: closed - Opened by tabedzki about 2 months ago

#787 - Multiple Issues After Running KS4

Issue - State: open - Opened by EmmaCondon about 2 months ago - 17 comments

#786 - fix logger when running in a for loop

Pull Request - State: closed - Opened by RobertoDF about 2 months ago - 1 comment

#785 - MEA data for spike sorting

Issue - State: closed - Opened by Lime-y about 2 months ago - 5 comments

#784 - Discussion: Update logging to allow end-user logging level

Issue - State: open - Opened by tabedzki about 2 months ago - 11 comments
Labels: enhancement

#783 - Question: No good spike clusters sorted

Issue - State: open - Opened by Hobart10 about 2 months ago - 6 comments

#782 - BUG: PCA features zero values on relevant channels

Issue - State: closed - Opened by ckwalters about 2 months ago - 2 comments

#780 - BUG: <How to assign a better setting based on the probe map>

Issue - State: open - Opened by Alchemist-Y about 2 months ago - 11 comments

#779 - FEATURE: Support very long chronic recordings

Issue - State: closed - Opened by alejoe91 about 2 months ago - 2 comments

#778 - about Kilosort4

Issue - State: closed - Opened by bxy666666 about 2 months ago - 3 comments

#775 - Improve memory management in clustering_qr.kmeans_plusplus

Pull Request - State: open - Opened by RobertoDF 2 months ago - 13 comments

#774 - clustering_qr.kmeans_plusplus explicit tensors deletion

Pull Request - State: closed - Opened by RobertoDF 2 months ago - 1 comment

#773 - clustering_qr.kmeans_plusplus explicit tensors deletion

Pull Request - State: closed - Opened by RobertoDF 2 months ago

#772 - [HELP] peak to trough time

Issue - State: closed - Opened by Lorena-J 2 months ago - 2 comments

#769 - Extracting Cluster Spiketimes

Issue - State: closed - Opened by AidanFishenden 2 months ago - 8 comments

#768 - Confirming Proper Use

Issue - State: closed - Opened by AidanFishenden 2 months ago - 2 comments

#767 - Slow running speed

Issue - State: open - Opened by Tingchen-G 2 months ago - 13 comments

#766 - BUG: <Crash of Kilosort and/or computer during first clustering>

Issue - State: open - Opened by ttmysd70c6f5 2 months ago - 20 comments

#764 - GPU question

Issue - State: closed - Opened by HWWiggins 3 months ago - 1 comment

#763 - Creating a tuning curve using spike cluster and spike time data

Issue - State: closed - Opened by AidanFishenden 3 months ago - 2 comments

#762 - BUG: Kilosort3 Phy output has a wrong map if chanMap is not the default value

Issue - State: closed - Opened by Jialiang-Lu 3 months ago - 2 comments
Labels: Kilosort3

#761 - Update basic_example.ipynb

Pull Request - State: closed - Opened by zhang3xing1 3 months ago

#760 - How to increase spike window size

Issue - State: closed - Opened by 1HosseinHeydari8 3 months ago - 1 comment

#759 - QUESTION: Does KS4 implement catGT tshift?

Issue - State: closed - Opened by chris-angeloni 3 months ago - 1 comment

#757 - Restrict template detection to individual shank (kilosort 4)

Issue - State: closed - Opened by Daruum 3 months ago - 4 comments

#756 - BUG: <Can't Run The Package>

Issue - State: closed - Opened by nacefguessaymi 3 months ago - 1 comment

#755 - Using Kilosort with HDF5 (.h5) files (from MultiChannelSystem)

Issue - State: closed - Opened by K-Mritunjay 3 months ago - 3 comments

#754 - Update README.md

Pull Request - State: closed - Opened by nacefguessaymi 3 months ago - 3 comments

#753 - template_matching.align_U changing shape of learned templates

Issue - State: closed - Opened by rachelmcassidy 3 months ago - 3 comments

#752 - How to create a single channel map

Issue - State: closed - Opened by AidanFishenden 3 months ago - 3 comments
Labels: bug

#751 - BUG: <Kilosort4 Google Colab Example Data Sorting>

Issue - State: closed - Opened by ajcheng1 3 months ago - 1 comment

#748 - BUG: Getting strange waveforms with KiloSort4 compared to KiloSort2

Issue - State: closed - Opened by MariaShuja 3 months ago - 1 comment

#747 - BUG: CUDA out of memory error with no other software open

Issue - State: closed - Opened by Lathomas42 3 months ago - 1 comment

#746 - BUG: <CUDA out of memory>

Issue - State: closed - Opened by hemant22 3 months ago - 18 comments

#745 - FEATURE: Applying Kilosort to Microwires in Human Hybrid Electrodes

Issue - State: closed - Opened by XiaoyuZeng 3 months ago - 3 comments

#744 - INSTALLATION: Segmentation fault (core dumped) during the initial call

Issue - State: closed - Opened by ekurtgl 3 months ago - 4 comments

#743 - BUG：GPU calling failure when starting first clustering

Issue - State: open - Opened by Alchemist-Y 3 months ago - 14 comments

#742 - Bimodal amplitude distribution, nt and under-merging

Issue - State: closed - Opened by Tingchen-G 4 months ago - 5 comments

#741 - Jacob/output docs

Pull Request - State: closed - Opened by jacobpennington 4 months ago
Labels: docs

#740 - BUG: CUDNN_STATUS_NOT_SUPPORTED error

Issue - State: closed - Opened by a-zmz 4 months ago - 1 comment

#738 - FEATURE: <Use saved templates from a model recording session to run kilosort on another session>

Issue - State: closed - Opened by mberns-ru 4 months ago - 1 comment
Labels: enhancement

#736 - [fix] bug in run_kilosort function

Pull Request - State: closed - Opened by jd730 4 months ago

#735 - .rhs (intan) converter

Issue - State: closed - Opened by Lorena-J 4 months ago

#734 - BUG: <after splitting in phy the amp is not recomputed>

Issue - State: closed - Opened by zkcsmxz 4 months ago - 2 comments

#733 - BUG: pytorch not recognizing CUDA 12.4/12.5 drivers

Issue - State: closed - Opened by ryan-budde 4 months ago - 4 comments

#730 - Explanation for the output files

Issue - State: closed - Opened by zkcsmxz 4 months ago - 1 comment
Labels: docs

#728 - FEATURE: Upgrade kilosort without reinstalling it?

Issue - State: closed - Opened by NirvikNU 4 months ago - 1 comment

#727 - waveform duration, minimum firing rate and high pass filter cutoff

Issue - State: closed - Opened by dmitriivasilev 4 months ago - 4 comments

#726 - How to save filtered and whitened data from command prompt?

Issue - State: closed - Opened by hiroyukioya 5 months ago - 2 comments

#725 - Running Kilosort4 is very slow.

Issue - State: closed - Opened by yyyaaaaaaa 5 months ago - 6 comments

#724 - Kilosort4 runs into Zero Division Error - float division by zero

Issue - State: closed - Opened by Sfrap99 5 months ago - 9 comments

#723 - Sorting a subset of channels (Kilosort4)

Issue - State: closed - Opened by a-savoy 5 months ago - 1 comment

#722 - NumPy 2.0 compatibility

Issue - State: open - Opened by jacobpennington 5 months ago
Labels: enhancement

#721 - pytest --run slow gives urllib.error.HTTPError: HTTP Error 403: Forbidden

Issue - State: closed - Opened by Idavr 5 months ago - 3 comments

#720 - fix for cases in which filename contains string "ap" such as subject id

Pull Request - State: closed - Opened by thejanzimmermann 5 months ago - 1 comment

#718 - After converting the Intan data, the loaded data is empty.

Issue - State: closed - Opened by Fusenheizi 5 months ago - 5 comments

#717 - Question: What does kcoords do in Kilosort 4

Issue - State: closed - Opened by msj220001 5 months ago - 2 comments

#715 - Overflow of timestamps in KS4

Issue - State: open - Opened by seto0425 5 months ago - 19 comments

#714 - BUG:<kilosort4 API to run the kilosort4: too many values to unpack>

Issue - State: closed - Opened by Alchemist-Y 5 months ago - 2 comments

#713 - Template in Kilosort4 and spikeinterface

Issue - State: closed - Opened by yyyaaaaaaa 5 months ago - 1 comment

#712 - Kilosort spike sorting failed cannot compute length

Issue - State: closed - Opened by AbhiSwamiUConn 5 months ago - 4 comments

#710 - help adjusting parameters to control split/merge decisions

Issue - State: closed - Opened by Selmaan 5 months ago - 5 comments