Ecosyste.ms: Issues

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GitHub / ModellingWebLab/chaste-codegen issues and pull requests

#281 - Support Python 3.12

Issue - State: closed - Opened by kwabenantim 3 months ago - 4 comments
Labels: enhancement

#280 - Support Python 3.12

Pull Request - State: closed - Opened by kwabenantim 3 months ago - 1 comment
Labels: enhancement

#279 - Bump zipp from 1.2.0 to 3.19.1 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#278 - Bump certifi from 2023.7.22 to 2024.7.4 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#277 - Bump urllib3 from 1.26.18 to 1.26.19 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#276 - Bump requests from 2.31.0 to 2.32.0 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#275 - Bump jinja2 from 3.1.3 to 3.1.4 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#274 - Bump tqdm from 4.60.0 to 4.66.3 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#273 - Upgrade Github Actions

Pull Request - State: closed - Opened by kwabenantim 5 months ago - 1 comment
Labels: bug

#272 - Bump idna from 2.10 to 3.7 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#271 - Bump jinja2 from 2.11.3 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#270 - Bump jinja2 from 2.11.3 to 3.1.3 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: dependencies

#269 - Generate code for Lifex-ep

Issue - State: closed - Opened by kwabenantim 11 months ago - 1 comment
Labels: enhancement

#268 - Generate code for Open Carp

Issue - State: open - Opened by kwabenantim 11 months ago
Labels: enhancement

#267 - Bump urllib3 from 1.26.17 to 1.26.18 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#266 - Fix CI for Python 3.6

Pull Request - State: closed - Opened by kwabenantim 12 months ago - 1 comment
Labels: bug

#265 - Fix CI for Python 3.6

Issue - State: closed - Opened by kwabenantim 12 months ago - 1 comment
Labels: bug

#264 - Bump urllib3 from 1.26.5 to 1.26.17 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 2 comments
Labels: dependencies

#263 - Bump certifi from 2022.12.7 to 2023.7.22 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#262 - Bump pygments from 2.9.0 to 2.15.0 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#261 - Update ontology to allow IKr open probability

Issue - State: closed - Opened by mirams about 1 year ago

#260 - Update ontology and docs for doing it

Pull Request - State: closed - Opened by mirams about 1 year ago - 2 comments
Labels: enhancement

#259 - Bump requests from 2.25.1 to 2.31.0 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#258 - Bump mpmath from 1.2.1 to 1.3.0 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#257 - Auto-release publishing to pypi.org

Issue - State: open - Opened by flawmop over 1 year ago
Labels: enhancement

#256 - Docs about updates

Pull Request - State: closed - Opened by MauriceHendrix over 1 year ago - 1 comment

#254 - Exceptions via ontology

Pull Request - State: closed - Opened by MauriceHendrix over 1 year ago - 2 comments

#253 - Hgate shannon

Pull Request - State: closed - Opened by MauriceHendrix over 1 year ago - 1 comment

#252 - Shannon2004 exception

Pull Request - State: closed - Opened by MauriceHendrix over 1 year ago - 1 comment

#251 - Concentrations probabilities

Pull Request - State: closed - Opened by MauriceHendrix over 1 year ago - 1 comment

#250 - Pinned Pint version to be > 0.9 and < 0.20 since 0.20 has changed the…

Pull Request - State: closed - Opened by MauriceHendrix over 1 year ago - 1 comment

#249 - added checks for inf & nan for state vars

Pull Request - State: closed - Opened by MauriceHendrix almost 2 years ago - 2 comments

#248 - Bump certifi from 2020.12.5 to 2022.12.7 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#247 - Update pytest.yml

Pull Request - State: closed - Opened by MauriceHendrix almost 2 years ago - 1 comment

#246 - Update setup.py

Pull Request - State: closed - Opened by MauriceHendrix almost 2 years ago - 1 comment

#245 - Update README.md

Pull Request - State: closed - Opened by MauriceHendrix about 2 years ago - 1 comment

#244 - Bump lxml from 4.6.5 to 4.9.1 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#243 - New release

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#242 - Sundials 6.0 support

Pull Request - State: closed - Opened by kwabenantim over 2 years ago - 3 comments

#241 - Update CONTRIBUTING.md

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#240 - fixing appredict error

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#239 - prevent unused vars in jacobians

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#238 - Large int bug

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 3 comments

#237 - Sympy 1 10

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#236 - sympy 1.10 causing issues with chaste tests

Issue - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment
Labels: bug

#235 - changed help text

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#234 - Update tests to work with sympy 1.10

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago

#233 - removed mention of URI from help text

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago

#232 - Update _command_line_script.py

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago

#231 - Updated help text

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#229 - estimate timesteps for RL vs cvode

Issue - State: open - Opened by MauriceHendrix over 2 years ago

#228 - typo in labview.c template

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#227 - Add automated tests fest for python 3.10.

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#226 - Update RELEASE.md

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#225 - added rush-larsen treatment to rush-larsen-c output

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#224 - performance improvement to linearity check for rush-larsen using caching

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#223 - Update setup.py

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#222 - test jinja2 v3

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago

#221 - Update README.md

Pull Request - State: closed - Opened by MauriceHendrix over 2 years ago - 1 comment

#220 - Bump lxml from 4.6.3 to 4.6.5 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#219 - Update _command_line_script.py

Pull Request - State: closed - Opened by MauriceHendrix almost 3 years ago - 1 comment

#218 - added labview and c output for rush-larsen

Pull Request - State: closed - Opened by MauriceHendrix about 3 years ago - 1 comment

#217 - Update ontology submodule to latest available

Pull Request - State: closed - Opened by mirams about 3 years ago - 3 comments

#216 - Bump urllib3 from 1.26.4 to 1.26.5 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#215 - Update dev.txt

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#214 - Update setup.py

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#213 - Model factory

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#212 - Bump pillow from 8.0.1 to 8.1.1 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#211 - Bump py from 1.9.0 to 1.10.0 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#210 - Bump lxml from 4.6.2 to 4.6.3 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#209 - Bump urllib3 from 1.26.2 to 1.26.4 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#208 - Move singularities fix from codegen to cellmlmanip

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#207 - Bump py from 1.8.0 to 1.10.0 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#206 - Update RELEASE.md

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#205 - Move singularities fix

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#204 - Bump lxml from 4.4.1 to 4.6.3 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#203 - Bump jinja2 from 2.11.2 to 2.11.3 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#202 - Capacitance_warning

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#201 - possible speed up CVODE cells by sharing terms between EvaluateYDerivatives and EvaluateAnalyticJacobian

Issue - State: closed - Opened by MauriceHendrix over 3 years ago - 2 comments
Labels: enhancement

#200 - Lut

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#199 - Update lookup_tables

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#198 - moved tests to use chaste cllml repo as submodule

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#197 - Deal with and fix singularities in equations

Issue - State: closed - Opened by MauriceHendrix over 3 years ago - 2 comments
Labels: enhancement

#196 - Singularity fixes

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment
Labels: enhancement

#195 - Fixed Backward Euler

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#194 - add python 3.9 to test

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#193 - load fewer models for the tests

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#192 - Singularity fixes

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#191 - release 0.5.4

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#190 - Create pytest.yml

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 1 comment

#189 - Create github Actions

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#188 - New minor release

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#187 - Update _chaste_printer.py

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#186 - Create pytest.yml

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#185 - Update RELEASE.md

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#184 - moved optimise and improved used var analysis

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago

#183 - Bump lxml from 4.4.1 to 4.6.2 in /dev-requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#182 - Fixed sympy deprectaion warning when using sympy 1.7

Pull Request - State: closed - Opened by MauriceHendrix over 3 years ago - 2 comments