Ecosyste.ms: Issues

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GitHub / ModelOriented/survex issues and pull requests

#93 - Calculation of SHAP values for continuous and categorical variables

Issue - State: open - Opened by lzxcvn 4 months ago - 1 comment
Labels: question ❔

#92 - change the color of 'plot.aggregated_surv_shap'

Issue - State: closed - Opened by Dacy34 4 months ago - 2 comments

#88 - Code snippets for survival SVM and survival GBM

Issue - State: closed - Opened by pbiecek 8 months ago - 1 comment

#87 - SurvSHAP(t) calculation using {treeshap} and fixes for SurvLIME

Pull Request - State: closed - Opened by krzyzinskim 8 months ago

#86 - hot fixes for predict parts functions

Pull Request - State: closed - Opened by krzyzinskim 8 months ago

#85 - Feature: support SurvSHAP computation with {treeshap}

Pull Request - State: closed - Opened by kapsner 10 months ago - 6 comments

#84 - new functionalities

Pull Request - State: closed - Opened by krzyzinskim 10 months ago - 1 comment

#83 - Suggestion on progressr

Issue - State: closed - Opened by HenrikBengtsson 11 months ago - 4 comments
Labels: before release 📌, maintenance 🔨

#82 - development version

Pull Request - State: closed - Opened by krzyzinskim 11 months ago - 2 comments

#81 - merge global survshap to dev branch

Pull Request - State: closed - Opened by krzyzinskim 11 months ago

#80 - add test for rms::cph model

Pull Request - State: closed - Opened by krzyzinskim 11 months ago

#79 - Merge 2D profiles implementation into the PDP development branch

Pull Request - State: closed - Opened by krzyzinskim 11 months ago

#78 - Merge ALE implementation into the PDP development branch

Pull Request - State: closed - Opened by mikolajsp 11 months ago

#77 - Minor enhancements regarding implementation of global survshap

Pull Request - State: closed - Opened by kapsner 11 months ago - 2 comments

#76 - Request: Ability to use testing data for performance evaluation

Issue - State: closed - Opened by patrickheindel about 1 year ago - 1 comment
Labels: feature 💡

#75 - Feature: add support for computing SurvSHAP using treeshap-algorithm

Issue - State: closed - Opened by kapsner about 1 year ago - 2 comments

#74 - Feature: aggregation of SurvSHAP values across multiple observation

Pull Request - State: closed - Opened by kapsner about 1 year ago - 10 comments

#73 - Fix plotting and printing of SurvLIME for the coxph model

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#72 - SurvLIME sometimes doesn't print or plot for CPH model

Issue - State: closed - Opened by mikolajsp over 1 year ago - 1 comment
Labels: invalid ❕

#71 - Parallel analysis for model_parts function

Issue - State: closed - Opened by MosquitoFan over 1 year ago - 2 comments
Labels: feature 💡, long term 📅

#70 - Prepare the release of version 1.0.0

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#69 - How to understand the model_parts() to get the importantce of features

Issue - State: closed - Opened by Phoenix12580 over 1 year ago - 4 comments

#66 - Added SurvSHAP(t) calculation with `kernelshap` package

Pull Request - State: closed - Opened by krzyzinskim over 1 year ago

#65 - Rugs are plotted based on `y` for the entire dataset

Issue - State: closed - Opened by krzyzinskim over 1 year ago
Labels: invalid ❕

#64 - Changed time points generation process + printing info

Pull Request - State: closed - Opened by krzyzinskim over 1 year ago

#63 - Fix `normalization = "survival"` when integrating metrics.

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#62 - Extend tests and fix documentation

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#61 - Integration of metrics with `normalization = "survival"` doesn't work

Issue - State: closed - Opened by mikolajsp over 1 year ago
Labels: invalid ❕

#60 - Integration type =

Issue - State: closed - Opened by mikolajsp over 1 year ago

#59 - errors "Error in Ops.Surv(observed, predicted) : Invalid operation on a survival time"

Issue - State: closed - Opened by MosquitoFan over 1 year ago - 2 comments
Labels: bug 💣

#58 - Calculation & plotting ROC AUC for selected timepoints

Pull Request - State: closed - Opened by krzyzinskim over 1 year ago

#57 - Changed format of the arranged multiple plots

Issue - State: closed - Opened by krzyzinskim over 1 year ago
Labels: documentation 📚

#54 - Fixed prints of explanation results

Pull Request - State: closed - Opened by krzyzinskim over 1 year ago

#53 - Refactoring of `loss_integrate()` function

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#52 - Refactoring of feature importance code

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#51 - Change default `model_parts()` type to "difference"

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#50 - Change website theme to DrWhy

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#49 - Fixes for `predict_parts` explanations

Pull Request - State: closed - Opened by krzyzinskim over 1 year ago - 1 comment

#48 - Refactor print code

Issue - State: closed - Opened by krzyzinskim over 1 year ago

#47 - Add possibility for plotting multiple local explanations for the same model

Issue - State: closed - Opened by krzyzinskim over 1 year ago
Labels: feature 💡

#46 - SurvLIME doesn't work when all variables are categorical

Issue - State: closed - Opened by mikolajsp over 1 year ago
Labels: invalid ❕

#45 - SurvSHAP(t) calculation with `kernelshap` package

Issue - State: closed - Opened by krzyzinskim over 1 year ago
Labels: feature 💡

#44 - SurvSHAP(t) not working when target columns named different than time and status

Issue - State: closed - Opened by mikolajsp over 1 year ago
Labels: invalid ❕

#43 - Update reference to SurvSHAP(t)

Issue - State: closed - Opened by krzyzinskim over 1 year ago
Labels: documentation 📚

#42 - Website theme

Issue - State: closed - Opened by mikolajsp over 1 year ago
Labels: maintenance 🔨

#41 - Boxplot over the legend in pdp plots

Issue - State: open - Opened by mikolajsp over 1 year ago - 2 comments
Labels: feature 💡, long term 📅

#40 - Missing metric values don't cause a warning

Issue - State: closed - Opened by mikolajsp over 1 year ago - 1 comment
Labels: invalid ❕

#39 - In PDP `categorical_variables` argument is unintuitive

Issue - State: closed - Opened by mikolajsp over 1 year ago - 1 comment
Labels: maintenance 🔨

#38 - Update vignette

Issue - State: closed - Opened by mikolajsp over 1 year ago - 2 comments
Labels: documentation 📚, maintenance 🔨

#37 - Fix the x axis of the plots

Issue - State: closed - Opened by mikolajsp over 1 year ago - 2 comments
Labels: maintenance 🔨

#36 - Add information about time (range, method of generation) to printing of explainers

Issue - State: closed - Opened by mikolajsp over 1 year ago
Labels: feature 💡

#35 - Add geom_rug() with event times for explanation plots

Issue - State: closed - Opened by mikolajsp over 1 year ago - 1 comment
Labels: feature 💡

#34 - Adding support for DALEX default themes

Issue - State: closed - Opened by mikolajsp over 1 year ago - 1 comment

#33 - Change default type of `model_parts` to 'difference'

Issue - State: closed - Opened by mikolajsp over 1 year ago
Labels: feature 💡

#32 - default themes

Issue - State: closed - Opened by pbiecek over 1 year ago
Labels: R 🐳, feature 💡

#31 - refactor `loss_integrate`

Issue - State: closed - Opened by hbaniecki over 1 year ago
Labels: maintenance 🔨

#30 - survshap result attribute is of class `matrix` and should be a `data.frame`

Issue - State: closed - Opened by hbaniecki over 1 year ago
Labels: invalid ❕

#29 - remove unused lines of code in survshap

Issue - State: closed - Opened by hbaniecki over 1 year ago
Labels: maintenance 🔨

#28 - refactor feature importance code

Issue - State: closed - Opened by hbaniecki over 1 year ago
Labels: maintenance 🔨

#27 - add `max_vars` to plot survshap(t)

Issue - State: closed - Opened by hbaniecki over 1 year ago
Labels: feature 💡

#26 - improve survshap performance

Pull Request - State: closed - Opened by hbaniecki over 1 year ago

#25 - predict_parts survshap runs out of memory when `p >= 17`

Issue - State: closed - Opened by hbaniecki over 1 year ago - 1 comment
Labels: invalid ❕

#24 - `predict_parts` with mlr3

Issue - State: closed - Opened by hbaniecki over 1 year ago - 1 comment
Labels: bug 💣

#23 - add C index which ignores ties

Issue - State: open - Opened by hbaniecki over 1 year ago
Labels: feature 💡, long term 📅

#22 - add ROC AUC for selected timepoints

Issue - State: closed - Opened by hbaniecki over 1 year ago
Labels: feature 💡

#21 - Fix inconsistency with `facet_ncol`

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#20 - Refactor integration of time-dependent metrics

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#18 - Increase `mlr3proba` support

Pull Request - State: closed - Opened by mikolajsp over 1 year ago

#17 - ROC AUC for a binary classification problem

Issue - State: closed - Opened by hbaniecki over 1 year ago
Labels: bug 💣

#16 - error from explain

Issue - State: closed - Opened by billnjcn111 over 1 year ago - 4 comments
Labels: invalid ❕

#15 - update subtitle in plot_

Pull Request - State: closed - Opened by hbaniecki over 1 year ago

#14 - different legend titles in `plot.model_profile` between `categorical` and `numerical` plots

Issue - State: closed - Opened by hbaniecki over 1 year ago - 1 comment
Labels: invalid ❕

#13 - `facet_ncol` is missing in `plot_individual_ceteris_paribus_survival`

Issue - State: closed - Opened by hbaniecki over 1 year ago - 1 comment
Labels: invalid ❕

#12 - Add `plot.model_profile` for two or more models

Issue - State: closed - Opened by hbaniecki over 1 year ago - 2 comments
Labels: feature 💡

#11 - Allow the user to remove the subtitle in plots

Issue - State: closed - Opened by hbaniecki over 1 year ago - 2 comments
Labels: invalid ❕

#10 - Add wrapper for mlr3proba measures

Issue - State: closed - Opened by mikolajsp over 1 year ago
Labels: feature 💡

#9 - Integration method for time-dependent measures

Issue - State: closed - Opened by mikolajsp over 1 year ago - 1 comment
Labels: feature 💡

#8 - Update citations style in 'Creating custom explainers' vignette

Pull Request - State: closed - Opened by krzyzinskim almost 2 years ago

#7 - Change package for dealing with piecewise plots

Pull Request - State: closed - Opened by mikolajsp almost 2 years ago

#6 - Documentation

Pull Request - State: closed - Opened by mikolajsp almost 2 years ago

#5 - question about C/D AUC from model_performance()

Issue - State: closed - Opened by mao223 almost 2 years ago - 1 comment
Labels: documentation 📚, question ❔

#4 - Once per few checks, macOS-latest fails

Issue - State: closed - Opened by hbaniecki almost 2 years ago - 4 comments
Labels: maintenance 🔨, invalid ❕

#3 - Add survxai to references

Pull Request - State: closed - Opened by agosiewska almost 2 years ago - 1 comment

#2 - Improve the documentation of API

Issue - State: closed - Opened by hbaniecki almost 2 years ago
Labels: documentation 📚

#1 - Add information to old survxai repo

Issue - State: closed - Opened by mikolajsp almost 2 years ago - 2 comments