MoBiodiv/mobr issues and pull requests

#77 - Fix bugs.

Pull Request - State: closed - Opened by rueuntal over 8 years ago

#76 - Options for test of aggregation

Issue - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#75 - Overhaul of structure - breaking get_delta_stats() into smaller functions

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 7 comments

#74 - Clean up sensitivity tests.

Pull Request - State: closed - Opened by rueuntal over 8 years ago

#73 - Column names in plot_attr argument in make_comm_obj() function

Issue - State: closed - Opened by valentinitnelav over 8 years ago - 2 comments

#72 - Break the main analysis function into two for continuous vs discrete

Issue - State: closed - Opened by rueuntal over 8 years ago - 3 comments
Labels: enhancement

#71 - Fixed bug in how effect of N was calculated.

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 2 comments

#70 - Fix important bug in SAD null model and improve plotting

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#69 - SpadeR:::ChaoSpecies() error in boxplot function

Issue - State: closed - Opened by dmcglinn over 8 years ago - 10 comments
Labels: bug

#68 - Error in mob_stats() when calls ChaoSpecies{SpadeR}

Issue - State: closed - Opened by valentinitnelav over 8 years ago - 1 comment

#67 - How to scale axes

Issue - State: closed - Opened by dmcglinn over 8 years ago - 2 comments
Labels: enhancement

#66 - Add case studies to repo and minor bug fix for the boxplots

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#65 - Correct possible typo in mobr_boxplots.R

Pull Request - State: closed - Opened by oliverpurschke over 8 years ago - 1 comment

#64 - Sync with master, add partial ssad function, other minor changes

Pull Request - State: closed - Opened by dmcglinn over 8 years ago

#63 - Bug fix in group order in mobr_boxplots.R

Pull Request - State: closed - Opened by FelixMay over 8 years ago

#62 - Report overall significance level?

Issue - State: closed - Opened by dmcglinn over 8 years ago - 29 comments
Labels: enhancement

#61 - need to minimize class change delcarations

Issue - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#60 - Refactor code for effect of N

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 4 comments

#59 - Sample based random swapping algo is identical to individual rarefaction

Issue - State: closed - Opened by dmcglinn over 8 years ago - 3 comments

#58 - Extend boxplots for more than two groups

Pull Request - State: closed - Opened by FelixMay over 8 years ago

#57 - 4cur branch not up to date

Issue - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#56 - Extend plotting functions

Pull Request - State: closed - Opened by FelixMay over 8 years ago

#55 - 4curves

Pull Request - State: closed - Opened by rueuntal over 8 years ago

#54 - Need to think carefully about what the null models are

Issue - State: closed - Opened by rueuntal over 8 years ago - 61 comments

#53 - Implanting first pass on no w/in plot agg

Issue - State: closed - Opened by dmcglinn over 8 years ago - 7 comments

#52 - Yes-no test to tease apart effect of aggregation and N

Issue - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#51 - 3*3 plot

Pull Request - State: closed - Opened by rueuntal over 8 years ago

#50 - Update boxplots

Pull Request - State: closed - Opened by FelixMay over 8 years ago - 1 comment

#49 - Update functions plotSADs and plotSNPie

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#48 - Change the order of deductions to be consistent w/ interpretation.

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#47 - min, max, or mean

Issue - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#46 - Add Tukey-HSD post-hoc test to boxplots

Pull Request - State: closed - Opened by FelixMay over 8 years ago

#45 - Add old functions back into package

Pull Request - State: closed - Opened by dmcglinn over 8 years ago

#44 - Major change is null test for test 1

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#43 - Allow argument "group_var" for "get_delta_stats"

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#42 - Updated boxplot function

Pull Request - State: closed - Opened by FelixMay over 8 years ago - 1 comment

#41 - variable names in plot_attributes argument

Issue - State: open - Opened by dmcglinn over 8 years ago
Labels: bug

#40 - The type 1 error in test 1 has been fixed for the discrete case. Will…

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#39 - group argument to get_delta_stats request (lower priority)

Issue - State: closed - Opened by dmcglinn over 8 years ago - 1 comment
Labels: enhancement

#38 - Plot function for the three curves.

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#37 - Add new boxplot function

Pull Request - State: closed - Opened by FelixMay over 8 years ago - 1 comment

#36 - Force ind-based and sample-based curves to always pass (1, 1).

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#35 - Fix bug.

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#34 - Fix plot and row.names in comm object

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#33 - get_delta_stats() bug

Issue - State: closed - Opened by dmcglinn over 8 years ago - 4 comments

#32 - Fill in plot.mobr function.

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#31 - The bugs in test 2 are now fixed.

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#30 - Place null algos in separate functions per #29

Issue - State: closed - Opened by dmcglinn over 8 years ago - 2 comments

#29 - get_delta_stats() function running now

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#28 - Refactor in progress overhaul of code body. These changes are a first…

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#27 - Test 3 w/ null model

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 2 comments

#26 - Tests 1 (ind-based rarefaction) and 2 (effect of N) with null models

Pull Request - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#25 - Warnings

Issue - State: closed - Opened by rueuntal over 8 years ago - 1 comment

#24 - Define comm class which stores all the inputs to the rarefaction func…

Pull Request - State: closed - Opened by dmcglinn over 8 years ago - 1 comment

#23 - Minimal # of plots per group

Issue - State: closed - Opened by rueuntal over 8 years ago - 4 comments

#22 - First step towards using defined classes of objects in package.

Pull Request - State: closed - Opened by dmcglinn over 8 years ago

#21 - idiv2: to do list

Issue - State: open - Opened by rueuntal over 8 years ago - 8 comments
Labels: enhancement, help wanted

#20 - Effect of N, or difference between ind-based and sample-based implicit curves

Issue - State: closed - Opened by rueuntal almost 9 years ago
Labels: question, wontfix

#19 - aggregating results on the gradient

Issue - State: closed - Opened by dmcglinn almost 9 years ago - 3 comments

#18 - Refactor the existing mobr.R functions

Pull Request - State: closed - Opened by dmcglinn almost 9 years ago - 7 comments

#17 - Formulation of PIE?

Issue - State: closed - Opened by dmcglinn almost 9 years ago - 2 comments

#16 - rarefaction algos

Issue - State: closed - Opened by dmcglinn almost 9 years ago - 2 comments

#15 - rarefy_sample_explicit function

Issue - State: closed - Opened by dmcglinn about 9 years ago - 1 comment

#14 - Tidy code

Pull Request - State: closed - Opened by dmcglinn over 9 years ago - 1 comment

#13 - Overwrite contents of mobr.R with mobr_new.R and delete mobr_new.R

Pull Request - State: closed - Opened by dmcglinn over 9 years ago

#12 - Comparing SADs

Pull Request - State: closed - Opened by rueuntal over 9 years ago

#11 - Mostly ancillary functions to work with different input data formats.

Pull Request - State: closed - Opened by rueuntal over 9 years ago - 1 comment

#10 - Add functions to create Brian's pair-wise comparisons, and averaged randomization test

Pull Request - State: closed - Opened by rueuntal over 9 years ago

#9 - randomization test for samples gone?

Issue - State: closed - Opened by rueuntal over 9 years ago - 1 comment

#8 - Convert to R package

Pull Request - State: closed - Opened by dmcglinn over 9 years ago - 1 comment

#7 - Add temporary functions for pooling the sad.

Pull Request - State: closed - Opened by dmcglinn over 9 years ago

#6 - Add functions for computing the average rarefaction curve and a null …

Pull Request - State: closed - Opened by dmcglinn over 9 years ago

#5 - Change the return data structure of rare_ind()

Pull Request - State: closed - Opened by rueuntal over 9 years ago

#4 - Add functions for individual-level permutation of the accumulation curves

Pull Request - State: closed - Opened by rueuntal over 9 years ago

#3 - Multiple sub functions to manipulate accumulation curves

Pull Request - State: closed - Opened by rueuntal over 9 years ago - 1 comment

#2 - Add script providing an example empirical comparison

Pull Request - State: closed - Opened by dmcglinn over 9 years ago

#1 - Add functions to generate spatially explicit accumulation curves.

Pull Request - State: closed - Opened by rueuntal over 9 years ago - 1 comment

GitHub / MoBiodiv/mobr issues and pull requests