Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MoBiodiv/mobr issues and pull requests

#277 - Fix small bug and bring plot.mob_stats back

Pull Request - State: closed - Opened by dmcglinn 3 months ago

#276 - Bump to version 3.0.2

Pull Request - State: closed - Opened by dmcglinn 4 months ago

#274 - Minor changes to documentation and calc_beta_div

Pull Request - State: closed - Opened by dmcglinn 4 months ago

#273 - Update of mobr from 2.0.2 to 3.0.0

Pull Request - State: closed - Opened by dmcglinn 6 months ago

#272 - Add links to DESCRIPTION

Pull Request - State: closed - Opened by olivroy about 1 year ago

#271 - Spatially-explicit rarefaction

Pull Request - State: closed - Opened by FelixMay over 1 year ago - 1 comment

#270 - Errors in plot_rarefaction examples (dev branch)

Issue - State: closed - Opened by FelixMay almost 2 years ago - 2 comments

#268 - Update E-mail from Felix

Pull Request - State: closed - Opened by FelixMay about 2 years ago - 1 comment

#267 - towards more consistent computation of alpha, gamma, and beta diversity

Issue - State: closed - Opened by dmcglinn over 2 years ago - 5 comments
Labels: enhancement, question

#266 - calculation of betaC fails when there are at least 1 doubleton but no singletons

Issue - State: closed - Opened by dmcglinn almost 3 years ago - 4 comments
Labels: bug

#264 - Error in `get_delta_stats` for calculating density effects when dens_ratio < 1

Issue - State: closed - Opened by jimjunker1 about 3 years ago
Labels: bug

#263 - betaC calculation should richness be extrapolated?

Issue - State: closed - Opened by dmcglinn over 3 years ago - 4 comments

#262 - Merge beta_C functions into mobr dev branch

Pull Request - State: closed - Opened by dmcglinn over 3 years ago

#261 - vignette and documentation todo

Issue - State: open - Opened by dmcglinn over 3 years ago - 5 comments
Labels: enhancement

#260 - "mob" in the headlines

Issue - State: closed - Opened by T-Engel about 4 years ago - 2 comments
Labels: question

#259 - Wrong result from calc_SPIE when there are only singletons

Issue - State: closed - Opened by AlbanSagouis about 4 years ago - 2 comments

#258 - Negative S_PIE values when very small non integer abundances

Issue - State: closed - Opened by AlbanSagouis about 4 years ago - 11 comments
Labels: question, ToDo

#257 - control for fail when effort = NA and index = 'S_n'

Pull Request - State: closed - Opened by AlbanSagouis about 4 years ago - 1 comment

#255 - beta diversity calculations

Issue - State: closed - Opened by dmcglinn about 4 years ago - 10 comments
Labels: enhancement, question

#254 - todo: post v3.0 release

Issue - State: open - Opened by dmcglinn over 4 years ago - 7 comments
Labels: enhancement, help wanted, ToDo

#253 - Improve analyses that rely on latitude longitude spatial coordinates

Pull Request - State: closed - Opened by dmcglinn over 4 years ago - 1 comment

#252 - Rolling master to mobr version 2.0

Pull Request - State: closed - Opened by dmcglinn over 4 years ago

#251 - Bringing the dev branch up-to-date with refactoring from zscore branch

Pull Request - State: closed - Opened by dmcglinn over 4 years ago

#250 - Refactoring and grooming of code preparing for v2 release

Pull Request - State: closed - Opened by dmcglinn over 4 years ago

#249 - kNCN method not using great circle distances

Issue - State: closed - Opened by dmcglinn almost 5 years ago
Labels: bug, enhancement

#248 - Fix how spat_algo is handled in multiscale analysis

Pull Request - State: closed - Opened by dmcglinn about 5 years ago

#247 - Update vignette and default spatial algo

Pull Request - State: closed - Opened by dmcglinn about 5 years ago

#246 - Improve dependancy specifiction and documentation

Pull Request - State: closed - Opened by dmcglinn about 5 years ago

#245 - Better group handling and function documentation

Pull Request - State: closed - Opened by dmcglinn about 5 years ago

#244 - Allow unbalanced designs for multiscale mob analysis

Pull Request - State: closed - Opened by dmcglinn over 5 years ago

#243 - Warning needed: Computing and plotting issues when the design is unbalanced

Issue - State: closed - Opened by AlbanSagouis over 5 years ago - 7 comments
Labels: bug

#242 - make it clearer how statistics can be accessed

Issue - State: closed - Opened by dmcglinn over 5 years ago
Labels: enhancement

#241 - Extract direction of 'effect size' (D-bar)

Issue - State: closed - Opened by elslabbert over 5 years ago - 3 comments

#240 - readme needs updating

Issue - State: closed - Opened by jmchase over 5 years ago

#239 - Add formula specification method for mob stats

Issue - State: open - Opened by dmcglinn over 5 years ago
Labels: enhancement

#238 - rarefaction dens_ratio argument

Issue - State: open - Opened by dmcglinn over 5 years ago - 1 comment
Labels: ToDo

#236 - Refactored kNCN code

Pull Request - State: closed - Opened by dmcglinn over 5 years ago

#235 - Minor changes to make_mob_in function

Pull Request - State: closed - Opened by dmcglinn over 5 years ago

#234 - Add T-Engle's k-nearest centroid neighbor (kNCN) algorithm

Pull Request - State: closed - Opened by dmcglinn over 5 years ago - 1 comment

#233 - Bring dev branch up-to-date with master

Pull Request - State: closed - Opened by dmcglinn over 5 years ago

#232 - Update to the make_mob_in function

Pull Request - State: closed - Opened by caroliver almost 6 years ago - 2 comments

#231 - Add k-nearest centroid neighbor (kNCN) algorithm

Pull Request - State: closed - Opened by T-Engel almost 6 years ago - 3 comments

#230 - Improve aesthetics of plot.mob_out

Pull Request - State: closed - Opened by dmcglinn almost 6 years ago - 2 comments
Labels: enhancement

#229 - Prepare for CRAN submission

Issue - State: closed - Opened by dmcglinn almost 6 years ago

#228 - improve make_mob_in() function when spatial coordinates not available

Issue - State: closed - Opened by dmcglinn about 6 years ago - 10 comments

#227 - Calculating and extracting beta diversity

Issue - State: closed - Opened by T-Engel about 6 years ago - 2 comments
Labels: enhancement, question

#226 - Continuous multi-scale needs separate grouping and enviornmental variables

Issue - State: closed - Opened by dmcglinn over 6 years ago - 1 comment
Labels: enhancement

#225 - Rethink the sample-based rarefaction (sSBR) curve

Issue - State: closed - Opened by T-Engel over 6 years ago - 4 comments

#224 - Modify calc_PIE() so it doesnt output close to infinite values

Pull Request - State: closed - Opened by T-Engel over 6 years ago - 3 comments

#223 - Avoid inflated S_PIE values for low sample coverages

Issue - State: closed - Opened by T-Engel over 6 years ago - 1 comment
Labels: enhancement

#222 - Limited colours in plot_rarefaction

Issue - State: open - Opened by aornugent over 6 years ago - 2 comments
Labels: bug, enhancement

#221 - Auto_testing branch merge

Pull Request - State: closed - Opened by caroliver over 6 years ago - 1 comment

#220 - need to update documentation on rarefaction

Issue - State: closed - Opened by dmcglinn over 6 years ago - 1 comment
Labels: ToDo

#219 - Improve get_inds function and add documentation for internal functions

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#218 - get_mob_stats: several f_0 results as zero and beta_f_0 as NA?

Issue - State: closed - Opened by elslabbert over 6 years ago - 3 comments
Labels: question

#217 - Improve dependency documentation and remove several defunct functions

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#216 - Refactor and improve get_delta_stats function

Pull Request - State: closed - Opened by dmcglinn over 6 years ago - 3 comments

#215 - Improve vignette and other minor improvements

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#214 - Important changes to get_mob_stats and rarefaction functions

Pull Request - State: closed - Opened by dmcglinn over 6 years ago
Labels: enhancement

#213 - S_n metrics: what gamma S_n are we interested in?

Issue - State: closed - Opened by dmcglinn over 6 years ago - 5 comments
Labels: enhancement, help wanted, question

#212 - Add documentation to example datasets

Pull Request - State: closed - Opened by dmcglinn over 6 years ago - 1 comment

#211 - Allow specification of rare_thres as "N/S"

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#210 - Prevent warning messages and clean up typos

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#209 - Include alpha scale individual-based rarefaction curves?

Issue - State: open - Opened by T-Engel over 6 years ago - 5 comments
Labels: enhancement, question

#208 - Add documetation to example datasets

Pull Request - State: closed - Opened by T-Engel over 6 years ago - 5 comments

#207 - How to compute rarefaction on very small floating point abundances

Issue - State: open - Opened by dmcglinn over 6 years ago
Labels: enhancement, question

#206 - Major refactoring and extension of all scales delta curve analysis

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#205 - add documentation for example datasets

Issue - State: closed - Opened by dmcglinn over 6 years ago - 2 comments
Labels: enhancement, help wanted

#204 - get_delta_stats vector error on large data set

Issue - State: closed - Opened by elslabbert over 6 years ago - 9 comments
Labels: question

#203 - developing tests for rarefaction

Issue - State: closed - Opened by dmcglinn over 6 years ago - 6 comments
Labels: test

#202 - Update author list on app.

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#201 - Update case study figure and fix bug in computing univariate stats

Pull Request - State: closed - Opened by dmcglinn over 6 years ago

#200 - boxplot reference group should be on the left

Issue - State: closed - Opened by dmcglinn over 6 years ago - 1 comment
Labels: enhancement

#199 - sample IDs in get_mob_stats

Issue - State: open - Opened by dylancraven over 6 years ago - 4 comments
Labels: enhancement

#198 - Problem when f_0 is zero

Issue - State: closed - Opened by FelixMay over 6 years ago - 4 comments
Labels: bug

#197 - 'Error in -spat_cols'

Issue - State: closed - Opened by dylancraven over 6 years ago - 5 comments

#196 - Update mobr_boxplots.R

Pull Request - State: closed - Opened by T-Engel almost 7 years ago - 9 comments

#195 - shiny dashboard overhaul

Pull Request - State: closed - Opened by caroliver almost 7 years ago - 1 comment

#194 - xlim ERROR plotting get_mob_stats

Issue - State: closed - Opened by elslabbert almost 7 years ago - 3 comments

#193 - Complete overhaul of app using shiny dashboard

Pull Request - State: closed - Opened by caroliver almost 7 years ago

#192 - Fix how the argument log is treated in the plotting functions

Pull Request - State: closed - Opened by dmcglinn almost 7 years ago - 1 comment

#191 - plot.mob_out poorly handles the log argument

Issue - State: closed - Opened by dmcglinn almost 7 years ago - 1 comment
Labels: bug

#190 - Get_delta_stats output null for shiny app

Issue - State: closed - Opened by caroliver almost 7 years ago - 1 comment

#189 - Add stats tab to shiny app

Pull Request - State: closed - Opened by caroliver almost 7 years ago - 1 comment

#188 - Document and export function calc_biodiv

Pull Request - State: closed - Opened by FelixMay almost 7 years ago - 1 comment

#187 - Commit of RShiny app files - CSO

Pull Request - State: closed - Opened by caroliver almost 7 years ago - 2 comments

#186 - Allow user to more easily compute nonspatial plot-based rarefaction curve

Issue - State: closed - Opened by dmcglinn about 7 years ago - 3 comments
Labels: enhancement, question

#185 - Do not round sampling effort

Pull Request - State: closed - Opened by dmcglinn about 7 years ago - 3 comments

#184 - plot.mob_out uses rounded sampling effort for plot-based rarefaction curve

Issue - State: closed - Opened by dmcglinn about 7 years ago - 1 comment
Labels: question

#183 - Drop ref_group argument from two plot functions, fix edge case bug, and other minor updates

Pull Request - State: closed - Opened by dmcglinn about 7 years ago - 1 comment

#182 - Different group colors in different plotting functions

Issue - State: closed - Opened by dmcglinn about 7 years ago - 1 comment
Labels: enhancement

#181 - Add average difference (D_bar) as measure of effect size in two-scale analysis

Pull Request - State: closed - Opened by dmcglinn about 7 years ago - 1 comment

#180 - soft vs hard constraints for null models

Issue - State: closed - Opened by dmcglinn about 7 years ago - 1 comment
Labels: question

#179 - Error when installing package with vignette

Issue - State: closed - Opened by FelixMay about 7 years ago

#178 - Fix link problem in get_mob_stats

Pull Request - State: closed - Opened by FelixMay about 7 years ago - 1 comment