Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MiraldiLab/maxATAC issues and pull requests

#40 - Issue with plotting models. Potential clash between keras and tf.keras modules

Issue - State: closed - Opened by dlab-arp over 3 years ago - 1 comment

#39 - Develop is30 strand tf2

Pull Request - State: closed - Opened by FaizRizvi over 3 years ago - 1 comment

#38 - epoch_selection changes

Pull Request - State: closed - Opened by FaizRizvi over 3 years ago

#37 - Develop IS30 stranded prediction

Pull Request - State: closed - Opened by tacazares over 3 years ago

#36 - Develop is30 strand

Pull Request - State: closed - Opened by tacazares over 3 years ago

#34 - Stranded Prediction Benchmarking

Issue - State: closed - Opened by FaizRizvi over 3 years ago

#33 - maxATAC install issues on local machines

Issue - State: closed - Opened by FaizRizvi over 3 years ago - 7 comments
Labels: help wanted

#32 - Test bowtie2 alignment vs STAR

Issue - State: closed - Opened by tacazares over 3 years ago - 1 comment

#31 - Bayesian Optimization

Issue - State: open - Opened by tacazares over 3 years ago
Labels: enhancement, analysis

#30 - Train models using the complement strand sequence and reverse orientation

Issue - State: closed - Opened by tacazares over 3 years ago - 5 comments
Labels: enhancement, analysis, test feature

#29 - Develop revert pre balance train

Pull Request - State: closed - Opened by FaizRizvi over 3 years ago

#28 - GPU not working with develop_ROI

Issue - State: closed - Opened by FaizRizvi over 3 years ago - 3 comments

#27 - Develop roi

Pull Request - State: closed - Opened by FaizRizvi over 3 years ago

#26 - Develop balance train

Pull Request - State: closed - Opened by tacazares over 3 years ago - 2 comments

#25 - Develop issue24

Pull Request - State: closed - Opened by tacazares over 3 years ago

#24 - Troubleshoot min-max normalization and differences in max values across chromosomes

Issue - State: closed - Opened by tacazares over 3 years ago - 10 comments
Labels: bug, enhancement, analysis

#23 - Fixed a bug in peak calling

Pull Request - State: closed - Opened by tacazares over 3 years ago

#22 - Balancing ATAC-seq and ChIP-seq examples while training

Issue - State: closed - Opened by tacazares over 3 years ago - 8 comments
Labels: enhancement, analysis

#13 - Test interpretation code with a full model set

Issue - State: closed - Opened by tacazares almost 4 years ago
Labels: analysis, test feature

#12 - Test training models using stranded ATAC-seq signal

Issue - State: closed - Opened by tacazares almost 4 years ago
Labels: enhancement, wontfix, analysis

#10 - Can we supplement our ATAC models with DHS?

Issue - State: closed - Opened by tacazares almost 4 years ago - 3 comments
Labels: analysis