Micromeda/pygenprop issues and pull requests

#99 - Develop

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#98 - Optimized code for loading assignment caches micromeda files.

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#97 - add hot fixes from master.

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#96 - Added "preprocess" sub-command

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#95 - update version in setup.py to 1.1

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#94 - Develop

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#93 - More updated workflows

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#92 - port workflows back to develop.

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#91 - add workflows to develop

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#90 - Updated requirements

Pull Request - State: closed - Opened by LeeBergstrand almost 2 years ago

#89 - Develop

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#88 - Add conda build

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#87 - Develop

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#86 - GitHub actions

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#85 - move actions back to the action branch

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#84 - GitHub actions

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#83 - add code generating text citations. Rename citations attribute to be …

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#82 - added code to extract EC numbers for functional elements.

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#81 - replace py arrow with pickle

Pull Request - State: closed - Opened by LeeBergstrand about 3 years ago

#80 - PyArrow's Serialization Functionality is being deprecated.

Issue - State: closed - Opened by LeeBergstrand over 3 years ago - 1 comment

#79 - Make Step Expazy EC numbers accessible

Issue - State: closed - Opened by LeeBergstrand over 3 years ago - 1 comment

#78 - Develop

Pull Request - State: closed - Opened by LeeBergstrand over 3 years ago

#77 - error when using pygenprop ##StopIteration

Issue - State: closed - Opened by durubing-jn over 3 years ago - 9 comments

#76 - Update setup.py

Pull Request - State: closed - Opened by jjkoehorst over 3 years ago - 1 comment

#75 - Fix interproscan parsing

Pull Request - State: closed - Opened by LeeBergstrand almost 4 years ago

#74 - PrositePatterns have no e-value and cause a value error when they are inserted into Micromeda files.

Issue - State: closed - Opened by LeeBergstrand almost 4 years ago - 1 comment

#73 - Pygenprop no longer compatible with the latest InterProScan TSV files

Issue - State: closed - Opened by LeeBergstrand almost 4 years ago - 1 comment

#72 - Add serialization code

Pull Request - State: closed - Opened by LeeBergstrand over 4 years ago

#71 - Merge pull request #68 from Micromeda/master

Pull Request - State: closed - Opened by LeeBergstrand over 4 years ago

#70 - Update attributes of literature reference class

Issue - State: closed - Opened by LeeBergstrand almost 5 years ago - 1 comment

#69 - Create proper conda install.

Issue - State: closed - Opened by LeeBergstrand almost 5 years ago

#68 - add hot fixes

Pull Request - State: closed - Opened by LeeBergstrand almost 5 years ago

#67 - Read the docs needs updating.

Issue - State: open - Opened by LeeBergstrand almost 5 years ago

#66 - Docs fail due to failure to install NumPy

Issue - State: open - Opened by LeeBergstrand almost 5 years ago

#65 - Hotfixes release 0.8

Pull Request - State: closed - Opened by LeeBergstrand almost 5 years ago

#64 - Develop

Pull Request - State: closed - Opened by LeeBergstrand almost 5 years ago

#63 - Improve documentation

Pull Request - State: closed - Opened by LeeBergstrand almost 5 years ago

#62 - Add cli to pip install

Pull Request - State: closed - Opened by LeeBergstrand almost 5 years ago

#61 - Add cli

Pull Request - State: closed - Opened by LeeBergstrand almost 5 years ago

#60 - updates

Pull Request - State: closed - Opened by LeeBergstrand about 5 years ago

#59 - Update requirements.txt

Pull Request - State: closed - Opened by LeeBergstrand about 5 years ago

#58 - Make get_evidence_identifiers of the step class private.

Issue - State: closed - Opened by LeeBergstrand over 5 years ago - 1 comment

#57 - Create storage files with match data.

Pull Request - State: closed - Opened by LeeBergstrand over 5 years ago

#56 - Add unit tests for GenomePropertyResultsWithMatches

Issue - State: closed - Opened by LeeBergstrand over 5 years ago - 1 comment

#55 - Improve readme

Pull Request - State: closed - Opened by LeeBergstrand over 5 years ago

#54 - Update tutorial.ipynb

Pull Request - State: closed - Opened by LeeBergstrand over 5 years ago