Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Mesnage-Org/pgfinder issues and pull requests

#300 - chore(deps): bump cross-spawn from 7.0.3 to 7.0.6 in /web

Pull Request - State: open - Opened by dependabot[bot] 8 days ago
Labels: dependencies

#299 - chore(deps): bump @eslint/plugin-kit from 0.2.1 to 0.2.3 in /web

Pull Request - State: open - Opened by dependabot[bot] 11 days ago
Labels: dependencies

#298 - Add Apptainer Support

Issue - State: open - Opened by TheLostLambda 22 days ago

#297 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: open - Opened by pre-commit-ci[bot] 29 days ago - 1 comment

#296 - chore(deps): bump micromatch from 4.0.7 to 4.0.8 in /web

Pull Request - State: closed - Opened by dependabot[bot] 29 days ago
Labels: dependencies

#295 - fix(pyodide): match NPM and URL versions

Pull Request - State: closed - Opened by TheLostLambda 29 days ago - 1 comment
Labels: hacktoberfest-accepted

#294 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago

#293 - fix(pgfinder): use correct Pyodide version

Pull Request - State: closed - Opened by TheLostLambda 4 months ago

#292 - feat(ui): add tool titles

Pull Request - State: closed - Opened by TheLostLambda 4 months ago

#291 - chore(deps): bump ruff

Pull Request - State: closed - Opened by TheLostLambda 4 months ago - 1 comment

#290 - Write tests for the new UI modules

Issue - State: open - Opened by TheLostLambda 4 months ago
Labels: good first issue, tests, web

#289 - Add Svelte developer documentation

Issue - State: open - Opened by TheLostLambda 4 months ago
Labels: documentation, good first issue, web

#288 - Add option to WebUI for people to manually enter structures

Issue - State: closed - Opened by ns-rse 5 months ago - 1 comment
Labels: web

#287 - build(deps-dev): bump braces from 3.0.2 to 3.0.3 in /web

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#286 - build(deps): bump ws from 8.16.0 to 8.17.1 in /web

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#285 - feature(smithereens): Mass Builder for PGFinder 2.0

Pull Request - State: closed - Opened by ns-rse 6 months ago - 21 comments

#284 - Dimers using gm-AE as a donor...

Issue - State: open - Opened by smesnage 7 months ago
Labels: bug

#282 - eslint fails due to deprecated argument

Issue - State: closed - Opened by ns-rse 7 months ago - 1 comment
Labels: CI/CD

#281 - build(deps-dev): bump vite from 4.5.2 to 4.5.3 in /web

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#280 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#279 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#278 - ci: Tests fail under Python 3.11 and 3.12 on Windows

Issue - State: closed - Opened by ns-rse 8 months ago - 1 comment
Labels: bug

#277 - chore(release): v1.2.0

Pull Request - State: closed - Opened by TheLostLambda 8 months ago - 3 comments

#276 - fix!: don't round abundance

Pull Request - State: closed - Opened by TheLostLambda 8 months ago - 2 comments

#275 - Rounding out parametrisation of column names

Pull Request - State: closed - Opened by ns-rse 8 months ago

#274 - Consolidation issue

Issue - State: closed - Opened by smesnage 8 months ago - 5 comments
Labels: bug

#273 - Further parametrisation of column names

Issue - State: closed - Opened by ns-rse 8 months ago

#271 - chore: Updates action versions

Pull Request - State: closed - Opened by ns-rse 8 months ago

#270 - Add Cross-Replicate Consolidation

Issue - State: open - Opened by TheLostLambda 9 months ago - 2 comments
Labels: enhancement, Priority Task

#269 - Parametrises column names

Pull Request - State: open - Opened by ns-rse 9 months ago - 9 comments
Labels: io

#268 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago - 1 comment

#267 - Revise column names to be unique after consolidation

Issue - State: open - Opened by ns-rse 9 months ago
Labels: Priority Task

#266 - Integrate consolidation into the default output

Pull Request - State: closed - Opened by TheLostLambda 9 months ago - 15 comments

#265 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago - 1 comment

#264 - Enable prettier hook in pre-commit

Issue - State: closed - Opened by ns-rse 10 months ago - 1 comment
Labels: duplicate, CI/CD

#263 - Manually updating pre-commit-hooks

Pull Request - State: closed - Opened by ns-rse 10 months ago - 1 comment

#262 - Fix issues with Svelte Check and linting of package.json

Issue - State: closed - Opened by ns-rse 10 months ago - 3 comments

#261 - Fix Svelte upgrade errors

Issue - State: closed - Opened by ns-rse 10 months ago - 1 comment
Labels: tests, web

#260 - Fix pytest failures in PR

Issue - State: closed - Opened by ns-rse 10 months ago - 1 comment
Labels: tests

#259 - PGFinder 2.0 upgrade

Issue - State: closed - Opened by smesnage 10 months ago - 44 comments
Labels: web

#258 - build(deps-dev): bump vite from 4.4.12 to 4.5.2 in /web

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#257 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment

#256 - Unpeg pytest-regtest

Pull Request - State: closed - Opened by ns-rse 11 months ago

#255 - Fixing pytest-regtest issue

Pull Request - State: closed - Opened by ns-rse 11 months ago

#254 - Add an "advanced option" for automated consolidation

Issue - State: closed - Opened by smesnage 11 months ago - 2 comments

#253 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment

#252 - build(deps-dev): bump vite from 4.4.9 to 4.4.12 in /web

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#251 - Improve tests to cover raising of errors when reading structures

Issue - State: open - Opened by ns-rse about 1 year ago
Labels: tests

#250 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 4 comments

#249 - feat(parameters): add option to 3-1 cross-links

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 2 comments

#248 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#247 - build(deps-dev): bump postcss from 8.4.29 to 8.4.31 in /web

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#246 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#245 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#244 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#243 - Remove sphinx.ext.autosummary from lib/docs/conf.py

Pull Request - State: closed - Opened by ns-rse about 1 year ago - 7 comments
Labels: documentation, CI/CD

#242 - Switching to & configuring autoapi.extension for build docs

Pull Request - State: closed - Opened by ns-rse about 1 year ago - 2 comments
Labels: documentation, CI/CD

#241 - Recursively autosummary of API docs

Pull Request - State: closed - Opened by ns-rse about 1 year ago - 1 comment
Labels: documentation, CI/CD

#240 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#239 - API Documentation Seems Non-Existant on ReadTheDocs

Issue - State: closed - Opened by TheLostLambda about 1 year ago - 11 comments
Labels: bug, documentation, CI/CD, JOSS

#238 - Update Data Dictionary in the Documentation

Issue - State: closed - Opened by TheLostLambda about 1 year ago
Labels: documentation

#237 - Finish the documentation required by the repo merge

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 4 comments

#236 - Switching to RTD theme

Pull Request - State: closed - Opened by ns-rse about 1 year ago - 5 comments

#235 - Add Pyodide runtime caching?

Issue - State: open - Opened by TheLostLambda over 1 year ago - 2 comments
Labels: web

#234 - Design a PGFinder logo (to use as a favicon)

Issue - State: open - Opened by TheLostLambda over 1 year ago - 1 comment
Labels: web

#233 - Can't download more than 10 files at once?

Issue - State: closed - Opened by TheLostLambda over 1 year ago - 2 comments
Labels: web

#232 - Maybe build a WASM version of the biosaur2 on another repo

Issue - State: open - Opened by TheLostLambda over 1 year ago - 1 comment
Labels: web

#231 - Allow for the use of a non-default `parameters.yaml` file

Issue - State: open - Opened by TheLostLambda over 1 year ago
Labels: web

#230 - Fix prettier in pre-commit CI

Issue - State: closed - Opened by TheLostLambda about 1 year ago - 2 comments
Labels: web

#229 - Fix playwright in CI

Issue - State: closed - Opened by TheLostLambda about 1 year ago - 1 comment
Labels: web

#228 - Enable additional documentation versions on ReadTheDocs

Issue - State: closed - Opened by ns-rse about 1 year ago - 8 comments

#227 - The Great Repo Merge

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 4 comments

#226 - ci(docs): remove old github action for docs

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 3 comments

#225 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#224 - fix(output): add consolidation_ppm to output metadata

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 2 comments

#223 - A petty bug! Change typpos

Issue - State: closed - Opened by smesnage about 1 year ago - 3 comments
Labels: bug

#222 - Update usage.md

Pull Request - State: closed - Opened by smesnage about 1 year ago - 9 comments

#221 - Replace "mass library" by "Mass database"

Issue - State: closed - Opened by smesnage about 1 year ago - 1 comment
Labels: bug

#220 - Metadata does not contain ppm consolidation value

Issue - State: closed - Opened by smesnage about 1 year ago
Labels: bug

#219 - Update formatting and links

Pull Request - State: closed - Opened by bobturneruk about 1 year ago - 5 comments

#218 - feat: :memo: Configure readthedocs build

Pull Request - State: closed - Opened by bobturneruk about 1 year ago - 2 comments

#217 - Use readthedocs to host docs

Issue - State: closed - Opened by bobturneruk about 1 year ago - 1 comment

#216 - feat(errors): add even more helpful error messages

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 1 comment

#215 - Error message missing when submitting a file that is not .csv

Issue - State: closed - Opened by smesnage about 1 year ago
Labels: bug

#214 - feat(errors): add more helpful error messages

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 1 comment

#213 - Fix ORDA Release CI?

Issue - State: closed - Opened by TheLostLambda about 1 year ago - 5 comments
Labels: bug, CI/CD

#212 - fix(parameters): add missing gm-A structures

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago

#211 - [pre-commit.ci] pre-commit automatically updated.

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#210 - refactor(naming)!: add glycosidic bonds back into mass libraries

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 1 comment

#209 - refactor(modifications)!: l → Lac

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 2 comments

#208 - Modification naming and order tweaks

Issue - State: closed - Opened by TheLostLambda about 1 year ago

#207 - docs: add a changelog

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 1 comment

#206 - Merge `pgfinder-gui` into the `pgfinder` repository

Issue - State: closed - Opened by TheLostLambda about 1 year ago - 5 comments
Labels: JOSS

#205 - refactor(jupyter): no more jupyter (anywhere)

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 2 comments

#204 - test(regtest): switch to csv from aligned table view

Pull Request - State: closed - Opened by TheLostLambda about 1 year ago - 2 comments

#203 - Still some Jupyter stuff to cull...

Issue - State: closed - Opened by TheLostLambda over 1 year ago

#202 - Dynamically construct multimers

Issue - State: open - Opened by TheLostLambda over 1 year ago - 1 comment
Labels: enhancement

#201 - The Nomenclature Mega-Thread

Pull Request - State: closed - Opened by TheLostLambda over 1 year ago - 11 comments

#200 - Update usage docs after `pgfinder-gui` is finalised!

Issue - State: closed - Opened by TheLostLambda over 1 year ago - 2 comments
Labels: JOSS