Ecosyste.ms: Issues

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GitHub / Machine-Learning-for-Medical-Language/ctakes-client-py issues and pull requests

#64 - ci: add a coverage check

Pull Request - State: closed - Opened by mikix 7 months ago - 1 comment

#63 - ci: switch to PyPI trusted publishing instead of api tokens

Pull Request - State: closed - Opened by mikix over 1 year ago

#62 - Fix integration tests

Issue - State: open - Opened by mikix over 1 year ago
Labels: bug

#61 - feat: add ability to list polarity against the termexists model too

Pull Request - State: closed - Opened by mikix over 1 year ago

#60 - feat!: remove one line from the covid symptoms list

Pull Request - State: closed - Opened by mikix over 1 year ago

#59 - Bump version to 4.0

Pull Request - State: closed - Opened by mikix over 1 year ago

#58 - Updated ICD10 code list per @amy.zipursky and @alon.geva and reviewed…

Pull Request - State: closed - Opened by comorbidity over 1 year ago - 2 comments

#56 - New Feature: Export to LabelStudio JSON

Issue - State: open - Opened by comorbidity over 1 year ago

#54 - Added ICD10 precision terms -- this is for documentation of the ICD10…

Pull Request - State: closed - Opened by comorbidity almost 2 years ago

#52 - feat!: switch to async http request methods

Pull Request - State: closed - Opened by mikix almost 2 years ago

#51 - fix(text2fhir): don't duplicate CUIs

Pull Request - State: closed - Opened by mikix almost 2 years ago

#50 - duplicate concepts written to text2fhir coding statement

Issue - State: closed - Opened by comorbidity almost 2 years ago - 2 comments

#49 - fix: add a http timeout of 5 minutes for requests

Pull Request - State: closed - Opened by mikix almost 2 years ago

#48 - feat: add filesystem.covid_symptoms_path to get bsv path directly

Pull Request - State: closed - Opened by mikix almost 2 years ago

#47 - Add black, autoformat

Pull Request - State: closed - Opened by dogversioning about 2 years ago - 2 comments

#46 - created text2fhir example TEXT and JSON per request of @tmills

Pull Request - State: open - Opened by comorbidity about 2 years ago

#45 - text2fhir: add nlp_fhir() as an all-in-one FHIR resource generator

Pull Request - State: closed - Opened by mikix about 2 years ago

#44 - ci: run the security static analysis tool bandit

Pull Request - State: closed - Opened by mikix about 2 years ago

#43 - refactor: re-enable the wrong-import-order pylint check

Pull Request - State: closed - Opened by mikix about 2 years ago

#42 - add support for MedSpacy compatible endpoint

Issue - State: open - Opened by comorbidity about 2 years ago - 1 comment

#41 - Directory to CACHE ctakes JSON results should be $env variable

Issue - State: open - Opened by comorbidity about 2 years ago - 2 comments

#40 - COVID Symptoms simple expressions are still being missed

Issue - State: open - Opened by comorbidity about 2 years ago

#39 - build: drop support for Python 3.6, add support for 3.11

Pull Request - State: closed - Opened by mikix about 2 years ago

#38 - tests: update integration tests for new cTAKES image

Pull Request - State: closed - Opened by mikix about 2 years ago

#37 - docs: convert to markdown (from rst)

Pull Request - State: closed - Opened by mikix about 2 years ago

#36 - build: bump version to 1.3.1

Pull Request - State: closed - Opened by mikix about 2 years ago

#35 - Fix typo muscles

Pull Request - State: closed - Opened by comorbidity about 2 years ago

#33 - add README for Text2FHIR

Issue - State: open - Opened by comorbidity over 2 years ago

#32 - text2fhir: add new submodule for converting NLP to FHIR

Pull Request - State: closed - Opened by mikix over 2 years ago

#31 - Clinical Expert Opinion Revisions to COVID19 dictionary

Issue - State: closed - Opened by comorbidity over 2 years ago - 1 comment

#29 - lint: run pycodestyle too

Pull Request - State: closed - Opened by mikix over 2 years ago

#28 - client: clean up handling of unicode characters

Pull Request - State: closed - Opened by mikix over 2 years ago

#27 - tests: move integration tests into test/integration

Pull Request - State: closed - Opened by mikix over 2 years ago

#26 - Add official API for covid symptoms and umls semantic groups

Pull Request - State: closed - Opened by mikix over 2 years ago - 1 comment

#25 - polarity-diff-report: add --mention filter

Pull Request - State: closed - Opened by mikix over 2 years ago

#24 - build: move version into code and switch to flit

Pull Request - State: closed - Opened by mikix over 2 years ago

#23 - ctakesclient version should be easily by user

Issue - State: closed - Opened by comorbidity over 2 years ago - 1 comment

#22 - release: bump version to 1.0.4

Pull Request - State: closed - Opened by mikix over 2 years ago

#21 - build: add support for Python 3.6

Pull Request - State: closed - Opened by mikix over 2 years ago

#20 - lint: allow 120 line length

Pull Request - State: closed - Opened by mikix over 2 years ago

#19 - 14 physician note examples

Pull Request - State: open - Opened by comorbidity over 2 years ago - 1 comment

#18 - docs: add initial sphinx documentation

Pull Request - State: closed - Opened by mikix over 2 years ago

#17 - expose ctakesclient tests accessible to user

Issue - State: closed - Opened by comorbidity over 2 years ago - 1 comment

#16 - ctakesclient.client.post UTF-8 vs Latin-1 encoding

Issue - State: closed - Opened by comorbidity over 2 years ago

#15 - Drop minimum python to 3.7

Pull Request - State: closed - Opened by mikix over 2 years ago

#14 - Physician Note Examples: more examples that are realistic but not PHI

Issue - State: open - Opened by comorbidity over 2 years ago - 1 comment

#13 - Documentation sphinx python

Issue - State: closed - Opened by comorbidity over 2 years ago - 2 comments

#11 - Initial pass at a polarity difference report generator

Pull Request - State: closed - Opened by mikix over 2 years ago

#10 - Allow CI tests to run even the client/server tests

Issue - State: closed - Opened by mikix over 2 years ago - 1 comment

#9 - ci: add pytest github actions CI file

Pull Request - State: closed - Opened by mikix over 2 years ago

#8 - Polarity/Negation: compare cTAKES and cNLP Transformer negation accuracy.

Issue - State: closed - Opened by mikix over 2 years ago - 1 comment

#6 - Upload to stable pypi, rather than test instance

Pull Request - State: closed - Opened by mikix over 2 years ago

#5 - Update tests to pass

Pull Request - State: closed - Opened by mikix over 2 years ago

#4 - Add pypi publish workflow, triggered by release creation

Pull Request - State: closed - Opened by mikix over 2 years ago

#3 - Modernize packaging / layout

Pull Request - State: closed - Opened by mikix over 2 years ago

#2 - ci: add pylint check and reformat code to pass

Pull Request - State: closed - Opened by mikix over 2 years ago

#1 - feat!: Rename python module from ctakes to ctakesclient

Pull Request - State: closed - Opened by mikix over 2 years ago - 2 comments