Ecosyste.ms: Issues

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GitHub / Machine-Learning-for-Medical-Language/cnlp_transformers issues and pull requests

#104 - V0.4.0

Pull Request - State: closed - Opened by tmills almost 2 years ago

#102 - fix end to end relation extraction

Issue - State: closed - Opened by tmills almost 2 years ago
Labels: bug

#101 - implement probabilistic weight freezing

Issue - State: closed - Opened by tmills almost 2 years ago
Labels: enhancement

#99 - using new datasets library (motivated by mimic los task)

Pull Request - State: closed - Opened by tmills about 2 years ago

#98 - v0.3.2: remove usage of deprecated ALL_PRETRAINED_CONFIG_ARCHIVE_MAP

Pull Request - State: closed - Opened by tmills about 2 years ago

#97 - document special tokens and how to use them

Issue - State: open - Opened by tmills about 2 years ago

#95 - Add regression tests with toy data to test train_system

Issue - State: open - Opened by angus-lherrou about 2 years ago
Labels: enhancement

#94 - v0.3.2: remove usage of deprecated ALL_PRETRAINED_CONFIG_ARCHIVE_MAP

Pull Request - State: closed - Opened by angus-lherrou about 2 years ago

#93 - v0.3.1 (again)

Pull Request - State: closed - Opened by angus-lherrou about 2 years ago

#92 - Revert 90 v0.3.1

Pull Request - State: closed - Opened by angus-lherrou about 2 years ago

#90 - v0.3.1

Pull Request - State: closed - Opened by angus-lherrou about 2 years ago - 1 comment

#89 - Add basic testing capabilities

Pull Request - State: closed - Opened by angus-lherrou about 2 years ago

#88 - ImportError: cannot import name 'hf_bucket_url' from 'transformers.file_utils'

Issue - State: closed - Opened by angus-lherrou about 2 years ago - 3 comments

#87 - Add GitHub Actions for building and testing new versions

Pull Request - State: closed - Opened by angus-lherrou about 2 years ago - 1 comment

#86 - Update temporal_rest output in readme

Issue - State: closed - Opened by angus-lherrou about 2 years ago - 1 comment

#85 - Fresh install doesn't work due to old numpy version

Issue - State: closed - Opened by mikix about 2 years ago - 6 comments
Labels: bug, dependencies

#84 - Taggers with CRFs

Issue - State: closed - Opened by etgld over 2 years ago - 1 comment

#82 - upgrade PyRuSH dependency; support Python 3.9 and 3.10

Pull Request - State: closed - Opened by angus-lherrou over 2 years ago

#81 - v0.3.0

Pull Request - State: closed - Opened by angus-lherrou over 2 years ago - 1 comment

#80 - Add loading and saving for baseline models.

Pull Request - State: closed - Opened by tmills over 2 years ago

#78 - Update documentation for ReadTheDocs

Pull Request - State: closed - Opened by angus-lherrou over 2 years ago

#77 - Add way to dynamically add processors to cnlp_processors

Issue - State: closed - Opened by angus-lherrou over 2 years ago - 2 comments
Labels: enhancement

#76 - Add branching logic to use class weights in mtl setup, not well-teste…

Pull Request - State: closed - Opened by tmills over 2 years ago

#75 - Mtlweights 47

Pull Request - State: closed - Opened by tmills over 2 years ago

#74 - Select subsets of multitask learning tasks

Issue - State: closed - Opened by angus-lherrou over 2 years ago - 1 comment

#72 - HierarchicalModel is broken

Issue - State: closed - Opened by angus-lherrou over 2 years ago

#71 - Bertviz 11

Pull Request - State: closed - Opened by tmills over 2 years ago

#70 - Integrate Ray Tune for Internal Hyperparameter Search

Issue - State: open - Opened by etgld over 2 years ago - 3 comments

#69 - Add cnlpt pipelines 60

Pull Request - State: closed - Opened by etgld over 2 years ago

#68 - Merge fix for #42 into v0.3.0

Pull Request - State: closed - Opened by angus-lherrou over 2 years ago

#67 - Added check in model for layer being compatible with encoder.

Pull Request - State: closed - Opened by tmills over 2 years ago

#66 - changed command line flag from --model_name_or_path to --encoder_name

Issue - State: closed - Opened by yfeng24816 over 2 years ago - 1 comment

#65 - Update readme to remove unnecessary init calls.

Pull Request - State: closed - Opened by tmills over 2 years ago

#64 - clean up readme for updates to rest apis

Issue - State: closed - Opened by tmills over 2 years ago

#63 - Nocuda 42

Pull Request - State: closed - Opened by tmills over 2 years ago

#62 - Resolves issue-61.

Pull Request - State: closed - Opened by tmills over 2 years ago

#61 - generalize api scripts to different tokenizers

Issue - State: closed - Opened by tmills over 2 years ago

#60 - Integrate cnlpt_pipelines (Hf pipelines wrapper)

Issue - State: closed - Opened by etgld over 2 years ago - 1 comment

#58 - write data processors for N2C2 SDoH data (2022 track 2)

Issue - State: closed - Opened by tmills over 2 years ago

#57 - write tests for evaluation code

Issue - State: closed - Opened by tmills over 2 years ago

#56 - Decide what to do about sentence segmenter

Issue - State: open - Opened by tmills over 2 years ago

#55 - Decide how to organize README

Issue - State: closed - Opened by tmills over 2 years ago

#54 - create readthedocs page with existing documentation

Issue - State: closed - Opened by tmills over 2 years ago - 2 comments

#52 - Baseline models don't get saved

Issue - State: closed - Opened by angus-lherrou over 2 years ago - 1 comment

#49 - check layer argument against model size

Issue - State: closed - Opened by tmills over 2 years ago

#48 - use HF pipelines in REST APIs

Issue - State: closed - Opened by tmills over 2 years ago - 1 comment

#47 - fix class weights for multi-task setup

Issue - State: closed - Opened by tmills over 2 years ago - 1 comment

#42 - Allow model APIs to run without CUDA

Issue - State: closed - Opened by tmills over 2 years ago - 1 comment

#38 - add support for newer versions of pytorch

Pull Request - State: closed - Opened by angus-lherrou over 2 years ago

#35 - Add support for DistilBERT encoder

Issue - State: closed - Opened by angus-lherrou over 2 years ago - 2 comments

#32 - v0.2.0

Pull Request - State: closed - Opened by angus-lherrou over 2 years ago

#30 - Wrap existing models in cassis and to be callable by ctakes java/python bridge

Issue - State: closed - Opened by tmills over 2 years ago - 1 comment

#17 - upgrade glue-based preprocessing to use Datasets

Issue - State: closed - Opened by tmills almost 3 years ago

#11 - Add Jupyter notebook for running BertViz with existing models

Issue - State: closed - Opened by tmills almost 3 years ago
Labels: enhancement

#10 - Clean up existing commented-out code that isn't needed.

Issue - State: closed - Opened by tmills almost 3 years ago
Labels: documentation

#9 - Add comments to existing functions

Issue - State: closed - Opened by tmills almost 3 years ago
Labels: documentation

#5 - Test/update to latest huggingface version

Issue - State: closed - Opened by tmills almost 3 years ago
Labels: enhancement

#3 - Add REST API for concept normalization

Issue - State: open - Opened by tmills almost 3 years ago - 2 comments
Labels: enhancement