Ecosyste.ms: Issues

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GitHub / Machine-Learning-for-Medical-Language/cnlp_transformers issues and pull requests

#205 - update hf transformers version for safetensors saving

Issue - State: open - Opened by tmills about 2 months ago

#203 - [FEAT] Add feature to export sentences. Modified output format

Pull Request - State: closed - Opened by wonjininfo 3 months ago

#202 - Dev v0.7.0

Pull Request - State: open - Opened by tmills 4 months ago

#201 - Pytorch version requirements in setup.cfg

Issue - State: open - Opened by wonjininfo 4 months ago - 1 comment

#200 - Experimental macOS/MPS support

Pull Request - State: closed - Opened by ianbulovic 5 months ago - 1 comment

#199 - first pass at MPS support

Pull Request - State: closed - Opened by ianbulovic 5 months ago - 1 comment

#197 - Deleted import line for ALL_PRETRAINED_CONFIG_ARCHIVE_MAP (deprecated)

Pull Request - State: closed - Opened by guo0O0o 5 months ago - 1 comment

#196 - Temporal extraction

Pull Request - State: open - Opened by spencerthomas1722 10 months ago

#195 - Deprecated logger.warn() to be removed in Python 3.13

Issue - State: open - Opened by angus-lherrou about 1 year ago

#194 - REST APIs Support Loading Models on Disk

Issue - State: open - Opened by etgld about 1 year ago - 1 comment

#193 - [FUNC] Add an option for truncation from left

Pull Request - State: closed - Opened by wonjininfo about 1 year ago - 2 comments

#192 - docker: tweak docker builds, mostly to get gpus working

Pull Request - State: closed - Opened by mikix about 1 year ago

#191 - Add docker build script & update the termexists model

Pull Request - State: closed - Opened by mikix about 1 year ago

#190 - Make sure eval_one_score metric is saved for Trainer

Pull Request - State: closed - Opened by mikix about 1 year ago - 3 comments

#189 - Examples for Probability Outputs and Error Analysis

Issue - State: open - Opened by etgld about 1 year ago

#187 - Update drugs.com dataset URL

Pull Request - State: closed - Opened by mikix about 1 year ago - 1 comment

#186 - --do_eval with no --do_train crashes when checking for model selection labels

Issue - State: closed - Opened by etgld about 1 year ago - 2 comments

#185 - Label Names and Supports In cnlp_metrics

Issue - State: open - Opened by etgld about 1 year ago

#184 - Add isort to pre-commit hooks

Pull Request - State: closed - Opened by angus-lherrou about 1 year ago - 2 comments

#183 - Implement domain-adaptive pretraining

Pull Request - State: closed - Opened by angus-lherrou about 1 year ago - 1 comment

#182 - dataset and metadata schema

Pull Request - State: open - Opened by angus-lherrou about 1 year ago

#181 - Cleanup of several functions, adding doc strings and type annotations.

Pull Request - State: closed - Opened by tmills about 1 year ago

#180 - add tests for functions

Issue - State: open - Opened by tmills about 1 year ago

#179 - move argument handling code into cnlp_args

Issue - State: open - Opened by tmills about 1 year ago
Labels: enhancement

#178 - Add pre-commit

Pull Request - State: closed - Opened by angus-lherrou about 1 year ago

#177 - Clean up data format table, add description of hier model.

Pull Request - State: closed - Opened by tmills about 1 year ago

#176 - Initial run of black formatter.

Pull Request - State: closed - Opened by tmills about 1 year ago

#175 - Output prediction probs

Pull Request - State: closed - Opened by wonjininfo about 1 year ago

#174 - Dev v0.6.1

Pull Request - State: closed - Opened by tmills about 1 year ago

#173 - added arguments for model selection metric

Pull Request - State: closed - Opened by spencerthomas1722 over 1 year ago - 1 comment

#172 - Dev error analysis

Pull Request - State: closed - Opened by etgld over 1 year ago - 2 comments

#171 - More human readable predictions and error analysis with no prediction re-runs

Issue - State: open - Opened by etgld over 1 year ago - 2 comments

#170 - Keep existing classifiers (hier models)

Pull Request - State: closed - Opened by wonjininfo over 1 year ago

#167 - Dev v0.6.0

Pull Request - State: closed - Opened by tmills over 1 year ago

#166 - update CONTRIBUTING.md with docker build/test instructions

Issue - State: open - Opened by tmills over 1 year ago

#165 - add support for python 3.11

Issue - State: open - Opened by tmills over 1 year ago - 1 comment

#163 - Added dev dockerfiles

Pull Request - State: closed - Opened by dogversioning over 1 year ago - 2 comments

#162 - Grab chunk attentions so that we can visualize hierarchical attention.

Pull Request - State: closed - Opened by tmills over 1 year ago - 1 comment

#161 - Drop support for Python 3.7

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago

#160 - Drop support for Python 3.7

Issue - State: closed - Opened by angus-lherrou over 1 year ago

#157 - Implement dev version of Dockerfiles

Issue - State: open - Opened by tmills over 1 year ago

#156 - writing predictions uses last model rather than best model

Issue - State: closed - Opened by tmills over 1 year ago

#154 - Adjust Sphinx docs

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago

#153 - Add requirements for transform_prot

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago - 5 comments

#152 - Add support for loading local encoders for fine-tuning

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago

#151 - Add reports for input truncation

Issue - State: open - Opened by angus-lherrou over 1 year ago

#150 - Realign baseline models with new task flow

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago

#147 - Character model support

Pull Request - State: closed - Opened by etgld over 1 year ago

#144 - merge docs and github actions changes into dev-v0.6.0

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago

#143 - rename ClinicalNLPDataset

Issue - State: open - Opened by tmills over 1 year ago

#142 - Issue 138 datasets

Pull Request - State: closed - Opened by tmills over 1 year ago

#141 - re-implement sequential fine-tuning

Issue - State: open - Opened by tmills over 1 year ago

#139 - Move versioning into cnlpt.__version__

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago

#138 - handle case with varying numbers of dataset arguments and task name arguments.

Issue - State: open - Opened by tmills over 1 year ago - 4 comments

#137 - trainer does not actually use multiple datasets

Issue - State: closed - Opened by tmills over 1 year ago

#136 - Dockerize hierarchical model

Issue - State: closed - Opened by tmills over 1 year ago - 2 comments

#135 - Update doctimerel rest to use current helper methods in cnlp_rest.

Pull Request - State: closed - Opened by tmills over 1 year ago

#134 - Update tiny DTR model

Issue - State: closed - Opened by tmills over 1 year ago

#133 - add warned-dataclasses

Pull Request - State: open - Opened by angus-lherrou over 1 year ago

#131 - Issue 130 - separate out hierarchical model to not inherit

Pull Request - State: closed - Opened by tmills over 1 year ago - 1 comment

#130 - disentangle hierarchical and standard models

Issue - State: closed - Opened by tmills over 1 year ago

#129 - V0.5.0 hoang specific to v0.5.0

Pull Request - State: closed - Opened by tmills over 1 year ago

#128 - Memory error in pyplot hist

Issue - State: closed - Opened by yingyali over 1 year ago - 4 comments

#127 - V0.5.0 hoang

Pull Request - State: closed - Opened by vanh17 over 1 year ago

#126 - Preloading models for docker servers (#115)

Pull Request - State: closed - Opened by etgld over 1 year ago

#125 - Move hierarchical encoder head config into CnlpConfig

Pull Request - State: closed - Opened by angus-lherrou over 1 year ago

#124 - Integrate concept normalization component to cnlpt

Pull Request - State: open - Opened by dongfang91 over 1 year ago - 3 comments

#123 - evaluation is very slow for tagging models

Issue - State: open - Opened by tmills over 1 year ago

#121 - character level model support

Issue - State: open - Opened by etgld over 1 year ago - 4 comments

#120 - Basic functionality for Galactica seems to be working

Pull Request - State: closed - Opened by etgld almost 2 years ago - 2 comments

#119 - Sync v0.5.0 with main

Pull Request - State: closed - Opened by angus-lherrou almost 2 years ago

#118 - Revert "Preloading models for docker servers (#115)"

Pull Request - State: closed - Opened by angus-lherrou almost 2 years ago

#117 - Integrate changes to json format reading

Pull Request - State: closed - Opened by tmills almost 2 years ago

#116 - Galactica Support

Issue - State: closed - Opened by etgld almost 2 years ago

#115 - Preloading models for docker servers

Pull Request - State: closed - Opened by dogversioning almost 2 years ago - 4 comments

#114 - v0.5.0

Pull Request - State: closed - Opened by angus-lherrou almost 2 years ago

#113 - Merge changes in main into v0.5.0

Pull Request - State: closed - Opened by angus-lherrou almost 2 years ago

#112 - add early return with zero statuses

Pull Request - State: closed - Opened by angus-lherrou almost 2 years ago

#111 - update DTR REST API to use new dataset batching

Issue - State: closed - Opened by tmills almost 2 years ago

#110 - Clarify build and release process in CONTRIBUTING.md

Pull Request - State: closed - Opened by angus-lherrou almost 2 years ago - 1 comment

#108 - Dockerization

Pull Request - State: closed - Opened by dogversioning almost 2 years ago - 8 comments

#107 - warning about metrics is too verbose

Issue - State: closed - Opened by tmills almost 2 years ago

#106 - TypeError: 'NoneType' object is not subscriptable

Issue - State: closed - Opened by mikix almost 2 years ago - 5 comments
Labels: documentation, enhancement