MaastrichtU-IDS/translator-openpredict issues and pull requests

#58 - Drug-Target predictions are broken

Issue - State: open - Opened by CaseyTa about 1 month ago - 2 comments
Labels: bug, api-query

#57 - Integration tests are broken

Issue - State: open - Opened by CaseyTa 2 months ago - 1 comment

#56 - Update code documentation and README

Issue - State: open - Opened by CaseyTa 2 months ago - 1 comment

#55 - Replace Dockerfile command of local install of predict-drug-target fo…

Pull Request - State: closed - Opened by CaseyTa 5 months ago - 2 comments

#54 - pip install for local source predict-drug-target

Pull Request - State: closed - Opened by CaseyTa 5 months ago - 2 comments

#53 - Set a default min_score of 0.5 for OpenPredict /predict endpoint

Pull Request - State: closed - Opened by CaseyTa 5 months ago - 1 comment

#52 - No score attribute on KG edges

Issue - State: closed - Opened by CaseyTa 10 months ago - 4 comments
Labels: bug, api-query

#51 - "extra fields not permitted" when empty aux graph included in message

Issue - State: closed - Opened by CaseyTa 12 months ago - 3 comments
Labels: bug, api-query

#50 - x-trapi.operations should be lookup

Pull Request - State: closed - Opened by CaseyTa about 1 year ago - 2 comments

#49 - SmartAPI registration is missing the x-trapi info

Issue - State: closed - Opened by CaseyTa about 1 year ago - 2 comments
Labels: bug, api-query

#48 - disease treats disease being returned on TRAPI query

Issue - State: closed - Opened by CaseyTa over 1 year ago - 4 comments
Labels: bug, api-query

#47 - feat:openpredict pipeline is refactored

Pull Request - State: closed - Opened by pahmadi8740 over 1 year ago - 1 comment

#46 - Bump markdown-it-py from 2.1.0 to 2.2.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#45 - Bump starlette from 0.14.2 to 0.25.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#44 - Bump cryptography from 38.0.4 to 39.0.1

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#43 - Create test-dev.yml

Pull Request - State: closed - Opened by elifozkn over 1 year ago - 1 comment

#42 - Bump future from 0.18.2 to 0.18.3

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#41 - Bump pyspark from 3.1.1 to 3.2.2

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#40 - Bump gitpython from 3.1.29 to 3.1.30

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#39 - add evidence path

Pull Request - State: closed - Opened by elifozkn about 2 years ago - 1 comment

#38 - Kgxpredict

Pull Request - State: closed - Opened by arifx about 2 years ago

#37 - Delete embfile.zip

Pull Request - State: closed - Opened by arifx about 2 years ago - 1 comment

#36 - Delete embfile.z03

Pull Request - State: closed - Opened by arifx about 2 years ago - 1 comment

#35 - Delete embfile.z01

Pull Request - State: closed - Opened by arifx about 2 years ago

#34 - Delete embfile.z02

Pull Request - State: closed - Opened by arifx about 2 years ago

#33 - XPREDICT shapley based drug prediction explanation service for Transl…

Pull Request - State: closed - Opened by arifx about 2 years ago - 1 comment

#32 - Deploy 1.3

Issue - State: closed - Opened by capasfield about 2 years ago - 4 comments

#31 - fix local deployment servers in openapi schema

Pull Request - State: closed - Opened by elifozkn about 2 years ago

#30 - Update Jenkinsfile

Pull Request - State: closed - Opened by pahmadi8740 over 2 years ago

#29 - fix: translator-ops branch is removed

Pull Request - State: closed - Opened by pahmadi8740 over 2 years ago

#28 - Bump numpy from 1.16.1 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#27 - Bump pyspark from 3.1.1 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#26 - Bump numpy from 1.16.1 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#25 - OpenPredict responding to a query expecting biolink:Genes

Issue - State: closed - Opened by CaseyTa about 3 years ago - 2 comments
Labels: bug, api-query

#24 - type->attribute_type_id

Issue - State: closed - Opened by cbizon over 3 years ago - 1 comment
Labels: bug, api-query

#23 - Invalid TRAPI

Issue - State: closed - Opened by cbizon over 3 years ago - 1 comment
Labels: bug, api-query

#22 - ZAP Scan Baseline Report - https://openpredict.semanticscience.org/

Issue - State: closed - Opened by github-actions[bot] almost 4 years ago

#20 - Use up to date pyrdf2vec to generate embeddings?

Issue - State: open - Opened by vemonet almost 4 years ago

#19 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by vemonet almost 4 years ago

#18 - Covid embeddings

Issue - State: open - Opened by vemonet about 4 years ago
Labels: embedding-request

#17 - Wikidata embeddings

Issue - State: open - Opened by vemonet about 4 years ago
Labels: embedding-request

#16 - Add new way to compute embeddings

Issue - State: closed - Opened by vemonet about 4 years ago
Labels: enhancement

#15 - Accept embeddings as CSV and JSON

Issue - State: open - Opened by vemonet about 4 years ago
Labels: enhancement, good first issue

#14 - Integrate to BioThings Explorer

Issue - State: closed - Opened by vemonet about 4 years ago
Labels: translator

#13 - Allow to provide scores interval

Issue - State: closed - Opened by vemonet about 4 years ago - 1 comment
Labels: enhancement, good first issue

#12 - Issue with Spark

Issue - State: closed - Opened by vemonet about 4 years ago - 1 comment
Labels: bug

#11 - Add users

Issue - State: open - Opened by vemonet about 4 years ago
Labels: question

#10 - Use OpenML to save models?

Issue - State: closed - Opened by vemonet about 4 years ago
Labels: question

#9 - Setting the API Server URL bug in Docker container

Issue - State: closed - Opened by vemonet about 4 years ago - 5 comments
Labels: bug

#8 - Empty tags are displayed by Swagger UI

Issue - State: closed - Opened by vemonet about 4 years ago - 1 comment
Labels: question

#7 - Inconsistent Docker build on different machines

Issue - State: closed - Opened by vemonet about 4 years ago - 2 comments
Labels: bug

#6 - Returns CSV file too for predict call

Issue - State: closed - Opened by vemonet about 4 years ago
Labels: enhancement, question

#5 - Add score filtering and additional properties

Issue - State: closed - Opened by vemonet about 4 years ago - 1 comment
Labels: bug

#4 - Error when ID not in the database

Issue - State: closed - Opened by vemonet about 4 years ago
Labels: bug

#3 - Look into scann library

Issue - State: closed - Opened by vemonet about 4 years ago - 1 comment
Labels: enhancement

#2 - Look into CML to build models and DVC to version them

Issue - State: closed - Opened by vemonet about 4 years ago - 1 comment
Labels: enhancement, question

#1 - Possible options to store and serve ML models

Issue - State: open - Opened by vemonet about 4 years ago - 1 comment
Labels: enhancement, question

GitHub / MaastrichtU-IDS/translator-openpredict issues and pull requests