Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / MPI-Dortmund/tomotwin-cryoet issues and pull requests
#106 - Making turning a segmentation into a binary mask
Issue -
State: open - Opened by hamid13r about 2 months ago
#105 - Update torchtrainer.py
Pull Request -
State: open - Opened by YousefMetwally 4 months ago
#104 - Update installation.rst
Pull Request -
State: closed - Opened by YousefMetwally 4 months ago
- 1 comment
#103 - Single forward run for embedding of anchor, negative and positive volumes.
Pull Request -
State: closed - Opened by YousefMetwally 4 months ago
- 1 comment
#102 - Auto encoder
Pull Request -
State: closed - Opened by YousefMetwally 4 months ago
#101 - environment creation command in docs doesn't work
Issue -
State: closed - Opened by alisterburt 5 months ago
- 3 comments
#100 - Issue with environment creation
Issue -
State: open - Opened by alisterburt 5 months ago
- 1 comment
#99 - Update installation.rst
Pull Request -
State: closed - Opened by YousefMetwally 5 months ago
#98 - Update changes link
Pull Request -
State: closed - Opened by thorstenwagner 5 months ago
#97 - Update to napari 0.4.19
Issue -
State: open - Opened by thorstenwagner 7 months ago
Labels: maintenance
#96 - Switch to SPDX-License-Identifiers
Pull Request -
State: closed - Opened by kephale 7 months ago
- 1 comment
#95 - Adjusting license headers
Issue -
State: closed - Opened by kephale 7 months ago
- 2 comments
#94 - Update documentation to cover new napari-tomotwin features
Issue -
State: open - Opened by thorstenwagner 8 months ago
Labels: documentation
#93 - Reduce number of forward passes during training for speed-up
Issue -
State: open - Opened by thorstenwagner 8 months ago
Labels: enhancement, good first issue
#92 - Use dask to speed-up the locate command
Issue -
State: closed - Opened by thorstenwagner 8 months ago
Labels: enhancement
#91 - Remove tomotwin from env file
Pull Request -
State: closed - Opened by thorstenwagner 8 months ago
#90 - Locate is now using dask
Pull Request -
State: closed - Opened by thorstenwagner 8 months ago
- 1 comment
#89 - Fast locate, new rapdis and updated tutorial
Pull Request -
State: closed - Opened by thorstenwagner 8 months ago
- 2 comments
#88 - Update to Rapids 23.12
Issue -
State: closed - Opened by thorstenwagner 8 months ago
Labels: maintenance
#87 - Update pytorch-metric-learning
Pull Request -
State: closed - Opened by thorstenwagner 10 months ago
- 1 comment
#86 - Label mask is not specificed
Issue -
State: open - Opened by DrJesseHansen 10 months ago
- 11 comments
#85 - UMAP manifold error
Issue -
State: closed - Opened by ffigueiredo85 10 months ago
- 13 comments
#84 - Release v0.8.0
Pull Request -
State: closed - Opened by thorstenwagner 10 months ago
- 2 comments
#83 - About Model Training and Loss Function
Issue -
State: open - Opened by JachyLikeCoding 10 months ago
- 2 comments
#82 - Write umap embeddings metadata + positions into umap attrs and remove label mask calculation
Pull Request -
State: closed - Opened by thorstenwagner 10 months ago
- 1 comment
#81 - add short training tutorial
Pull Request -
State: closed - Opened by thorstenwagner 10 months ago
- 1 comment
#80 - Inquiry Regarding Model Training and Resource Requirements
Issue -
State: closed - Opened by JachyLikeCoding 10 months ago
- 2 comments
#79 - fix numbering
Pull Request -
State: closed - Opened by GavinR1 11 months ago
#78 - Stop making tomotwin_tools crash on non gpu machines.
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#77 - TomoTwin_tools loads all tool dependencies
Issue -
State: closed - Opened by GavinR1 11 months ago
- 1 comment
#76 - Add median filter strategy
Pull Request -
State: closed - Opened by GavinR1 11 months ago
- 2 comments
#75 - napari_boxmanager by x-windows
Issue -
State: closed - Opened by kimdn 11 months ago
- 2 comments
#74 - CUDA/torch error since updating to 0.7.0
Issue -
State: closed - Opened by rdrighetto 11 months ago
- 10 comments
#73 - Install tomotwin by mamba
Issue -
State: closed - Opened by kimdn 11 months ago
- 3 comments
#72 - Check if ldconfig is in path
Issue -
State: open - Opened by thorstenwagner 11 months ago
Labels: enhancement
#71 - add links to strategies
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
#70 - Adds an images to strategies
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#69 - Link strategies in tutorial
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
#68 - make headlines
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
#67 - This PR adds strategies to the documentation
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#66 - Add fast median mask estimation
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#65 - Fix padding when creating heatmaps during locate with `--write_heatmaps`
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#64 - Add new umap and filter options
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#63 - Add connected components picking as alternative to findmax
Issue -
State: open - Opened by thorstenwagner 11 months ago
Labels: enhancement
#62 - Use distributed umap from rapids
Issue -
State: open - Opened by thorstenwagner 11 months ago
Labels: enhancement
#61 - Check & correct for duplicate embedded subvolumes
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#60 - `--save_after_improvement` saves models after each epoch
Pull Request -
State: closed - Opened by thorstenwagner 11 months ago
- 1 comment
#59 - boxmanager doesn't open
Issue -
State: closed - Opened by azazellochg 11 months ago
- 7 comments
#58 - v0.6.1 mask creation fails
Issue -
State: closed - Opened by azazellochg 11 months ago
- 23 comments
#57 - increase timeout of the dataloader to 180 seconds.
Pull Request -
State: closed - Opened by thorstenwagner 12 months ago
- 1 comment
#56 - Fix 'too many open files' problem
Pull Request -
State: closed - Opened by thorstenwagner 12 months ago
- 1 comment
#55 - Fix read the docs building
Pull Request -
State: closed - Opened by thorstenwagner 12 months ago
- 1 comment
#54 - Use random port for distributed processing
Pull Request -
State: closed - Opened by thorstenwagner 12 months ago
- 1 comment
#53 - memory issue of tomotwin_locate.py
Issue -
State: closed - Opened by jychoi0616 12 months ago
- 11 comments
#52 - Use stable pytorch 2.1
Pull Request -
State: closed - Opened by thorstenwagner 12 months ago
#51 - pytorch related warning/errors
Issue -
State: closed - Opened by jychoi0616 12 months ago
- 8 comments
#50 - Fix version youtube contrib package
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
- 1 comment
#49 - Update version of latest model
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#48 - Update rapids to 23.10
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
- 3 comments
#47 - Update checks_tests_deploy.yml
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#46 - Unpin pytorch
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#45 - Update to rapids 23.10
Issue -
State: closed - Opened by thorstenwagner about 1 year ago
Labels: maintenance
#44 - Update to latest metric-learning library
Issue -
State: closed - Opened by thorstenwagner about 1 year ago
Labels: maintenance
#43 - unpin metric learning lib
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
- 1 comment
#42 - libcublas.so.11 error
Issue -
State: closed - Opened by jychoi0616 about 1 year ago
- 3 comments
#41 - note on installation: non-GPU pytorch installed
Issue -
State: closed - Opened by nitishnih about 1 year ago
- 1 comment
#40 - Speed up TomoTwin: Use pytorch 2 and DistributedDataParallel
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
- 4 comments
#39 - update installation instructions
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#38 - Installation instructions updt
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
- 1 comment
#37 - Interactive clustering crashes with napari 0.4.18
Issue -
State: open - Opened by thorstenwagner about 1 year ago
Labels: bug
#36 - use napari 0.4.17 for now
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
- 1 comment
#35 - Add update instructions
Issue -
State: closed - Opened by thorstenwagner about 1 year ago
- 1 comment
Labels: documentation
#34 - Updated documentation
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#33 - fix labeling bug
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#32 - Accept key error when evaluation is running and use more flexibel label idenetification
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#31 - fix typo
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#30 - fix typos
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#29 - Update docs to fix some typos
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#28 - update documentation for masking
Pull Request -
State: closed - Opened by thorstenwagner about 1 year ago
#27 - Add option to specify a mask during embedding
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
- 2 comments
#26 - Added some developer information and slightly updated documentation
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
- 1 comment
#25 - Merge clusters
Issue -
State: open - Opened by thorstenwagner over 1 year ago
- 1 comment
Labels: enhancement
#24 - Embedding ROI specification by binary mask
Issue -
State: closed - Opened by thorstenwagner over 1 year ago
- 4 comments
Labels: enhancement
#23 - Editing readthedocs
Pull Request -
State: closed - Opened by GavinR1 over 1 year ago
- 2 comments
#22 - Add citation nmeth to index and citation.cff
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#21 - Updated dependencies and new installation instructions
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
- 1 comment
#20 - TomoTwin installation issues
Issue -
State: closed - Opened by bionanopatterning over 1 year ago
- 7 comments
Labels: bug
#19 - Auto release
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#18 - Add the citation.cff
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#17 - remove "follow soon" sentence :-)
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#16 - add YT video to clustering tutorial
Pull Request -
State: closed - Opened by GavinR1 over 1 year ago
- 2 comments
#14 - correct typo
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#13 - update installation instructions
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#12 - add changes for 0.4.0
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
- 1 comment
#11 - Clustering workflow release
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
- 1 comment
#10 - Added more unit tests, documentation and did some refactoring
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#9 - Refactor locate and add unit tests
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
#8 - Make pytest and coverage running
Pull Request -
State: closed - Opened by thorstenwagner over 1 year ago
- 1 comment
#7 - Move to pyTorch 2.x
Issue -
State: closed - Opened by thorstenwagner over 1 year ago
- 1 comment
Labels: enhancement
#6 - import error
Issue -
State: closed - Opened by azazellochg almost 2 years ago
- 2 comments