Ecosyste.ms: Issues

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GitHub / MPI-Dortmund/napari-tomotwin issues and pull requests

#34 - fixes for the latest cluster plotter

Pull Request - State: closed - Opened by thorstenwagner about 2 months ago

#33 - Napari stops working after importing umap data

Issue - State: open - Opened by saugatkandel 6 months ago - 5 comments
Labels: bug

#32 - New target manager

Pull Request - State: closed - Opened by thorstenwagner 9 months ago - 1 comment

#31 - Update napari 0.4.19

Pull Request - State: closed - Opened by thorstenwagner 9 months ago

#30 - Update napari 0.4.19

Pull Request - State: closed - Opened by thorstenwagner 9 months ago - 1 comment

#29 - Visualize targets after clusters were selected

Pull Request - State: closed - Opened by thorstenwagner 10 months ago

#28 - UMAP Recalculation: New option to recalculate UMAP for selected clusters

Pull Request - State: closed - Opened by thorstenwagner 10 months ago - 1 comment

#27 - make label layer visible

Pull Request - State: closed - Opened by thorstenwagner 11 months ago

#26 - Read embeddings path from metadata & Release v0.3.0

Pull Request - State: closed - Opened by thorstenwagner 11 months ago - 3 comments

#25 - fix unit tests and attrs names

Pull Request - State: closed - Opened by thorstenwagner 11 months ago - 1 comment

#24 - use correct attrs field

Pull Request - State: closed - Opened by thorstenwagner 11 months ago

#23 - use pairwise_distances instead of cdist to calculate medoid

Pull Request - State: closed - Opened by thorstenwagner 11 months ago - 1 comment

#22 - Calculate label mask within napari-tomotwin

Pull Request - State: closed - Opened by thorstenwagner 11 months ago - 2 comments

#21 - Picking particle become laggy when images get low pass filtered and are very big

Issue - State: closed - Opened by thorstenwagner 12 months ago - 1 comment
Labels: bug

#20 - No freezing GUI when loading umap / writing targers by adding threading + Visualize loading with spinners

Pull Request - State: closed - Opened by thorstenwagner 12 months ago - 1 comment
Labels: usability

#19 - Fix a bug when calculating recursive umaps

Pull Request - State: closed - Opened by thorstenwagner 12 months ago

#18 - Target calculation corrupted when index column is present

Pull Request - State: closed - Opened by thorstenwagner 12 months ago - 1 comment

#17 - Use complementary colors when highlight picks in the umap

Pull Request - State: closed - Opened by thorstenwagner 12 months ago - 1 comment

#16 - Add magicgui to requirements

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago - 1 comment

#15 - Add multiple anchor points

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago - 1 comment

#14 - make targets print is wrong

Issue - State: closed - Opened by thorstenwagner about 1 year ago - 1 comment

#13 - Update dependencies

Issue - State: closed - Opened by goanpeca about 1 year ago - 1 comment

#12 - Fix issue that circle is now drawn when clicking on tomogram

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago

#11 - Mapping tomogram -> umap does not work anymore

Issue - State: closed - Opened by thorstenwagner about 1 year ago

#9 - Show notification when umap or label mask is not defined.

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment

#8 - Load should be disabled when no label mask is provided

Issue - State: closed - Opened by thorstenwagner over 1 year ago

#7 - Install dependencies from conda

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment

#6 - add medoid method for calculation of cluster center

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 2 comments

#5 - remove not used tqdm from the requirements

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#4 - Version 0.1.4

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#3 - add changes for version 0.1.3

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#2 - Make label mask activated

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#1 - Make github actions work for py3.10

Pull Request - State: closed - Opened by mstabrin over 1 year ago - 1 comment