Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MPI-Dortmund/napari-boxmanager issues and pull requests

#77 - Add selection toggle button

Pull Request - State: closed - Opened by mstabrin 26 days ago

#76 - fix issue that the ticked checkboxes of tomo slices are ignored

Pull Request - State: closed - Opened by thorstenwagner 26 days ago - 1 comment

#75 - Fix matplotlib 3.9 issue

Pull Request - State: closed - Opened by thorstenwagner 5 months ago

#74 - pin matplotlib version?

Issue - State: closed - Opened by azazellochg 5 months ago - 2 comments

#73 - Refine existing filament picks

Issue - State: open - Opened by thorstenwagner 8 months ago
Labels: enhancement

#72 - Fix writing 3d coordinates

Pull Request - State: closed - Opened by thorstenwagner 10 months ago

#70 - fix crash when boxsize is a one dimensional array

Pull Request - State: closed - Opened by thorstenwagner 10 months ago

#69 - Rescale images before importing as stack

Issue - State: open - Opened by thorstenwagner 11 months ago
Labels: enhancement

#67 - Filtering by confidence does not work on single micrographs

Issue - State: open - Opened by thorstenwagner 11 months ago
Labels: bug

#66 - Set is_3d consistently + fix not-masked feature dataframe

Pull Request - State: closed - Opened by thorstenwagner 11 months ago

#65 - Remove pyqt5 from deps

Pull Request - State: closed - Opened by thorstenwagner 11 months ago

#64 - On Macs napari scales boxes wrongly

Issue - State: open - Opened by thorstenwagner 12 months ago - 1 comment

#63 - Picking particle become laggy when images get low pass filtered and are very big

Issue - State: open - Opened by thorstenwagner 12 months ago - 3 comments
Labels: bug

#62 - Only save relevant layers

Pull Request - State: closed - Opened by thorstenwagner 12 months ago
Labels: usability

#61 - Fix tloc writing

Pull Request - State: closed - Opened by thorstenwagner 12 months ago

#60 - Boxsize(width) when save a .coords file

Issue - State: open - Opened by fonsecareyna82 12 months ago - 2 comments

#59 - Error exporting particle layer to .cbox

Issue - State: closed - Opened by flng000 12 months ago - 9 comments

#58 - TomoTwin crashes when trying to save filament layer

Issue - State: closed - Opened by thorstenwagner about 1 year ago - 1 comment
Labels: bug

#57 - Save selected layers to folder

Pull Request - State: open - Opened by thorstenwagner about 1 year ago

#56 - Filament verticis have flipped coordinates

Issue - State: closed - Opened by thorstenwagner about 1 year ago

#55 - Fixing writing filaments as shape layers

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago - 2 comments

#54 - Save multiple coordinate layers to folder

Issue - State: open - Opened by thorstenwagner about 1 year ago
Labels: enhancement

#53 - Throw FileNotFoundError if the image does not exist.

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago

#52 - Add pyqt5 dependency

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago - 1 comment

#51 - Fix crash when certain float types don't support rounding

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago

#50 - Update dependencies

Issue - State: closed - Opened by goanpeca about 1 year ago - 2 comments

#49 - Fix crash when reading old cbox files

Pull Request - State: closed - Opened by thorstenwagner about 1 year ago

#48 - Boxmanager crashes when you load old cbox format

Issue - State: closed - Opened by thorstenwagner about 1 year ago
Labels: bug

#47 - 'Save to' gives bad filenames when data was loaded from tomotwin clustering

Issue - State: open - Opened by thorstenwagner about 1 year ago - 1 comment
Labels: bug

#46 - Boxmanager crashes when writing tloc

Issue - State: closed - Opened by thorstenwagner about 1 year ago
Labels: bug

#45 - Fix crash when saving particle coordinates as cbox when working with tomograms

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 2 comments

#44 - update readme

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#43 - Fix: Saving of filament crashes when tomo is used.

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#42 - Can't save filaments as CBOX

Issue - State: closed - Opened by thorstenwagner over 1 year ago

#41 - change napari requirements back to 0.4.17

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#40 - remove prints

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#39 - Fix crash when coordinates are saved

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#38 - Add missing dependencies

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#37 - No filename when coords saved when working with tomotwin .tloc files

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment

#36 - Update explicit dependencies

Issue - State: closed - Opened by goanpeca over 1 year ago - 2 comments

#35 - napari shows a mirror image of your tomogram

Issue - State: open - Opened by GavinR1 over 1 year ago

#34 - imod .coords seems to have an offset in napari

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 2 comments

#33 - Use original_path instead of name for all layer linking

Pull Request - State: closed - Opened by mstabrin over 1 year ago - 1 comment

#32 - Linking does not work with coords

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment

#31 - Add prefix and suffix for image and layers

Pull Request - State: closed - Opened by mstabrin over 1 year ago

#30 - Fix open files as folder

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#29 - Automatic linking of layers

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#28 - Fix issue with the wrong layer id beeing used

Pull Request - State: closed - Opened by mstabrin over 1 year ago - 2 comments

#27 - Add a few comments and minor refactoring

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#26 - Allow 3d viewer with 2d data

Pull Request - State: closed - Opened by mstabrin over 1 year ago - 1 comment

#25 - Crash when open coordinate folder

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment
Labels: bug

#24 - BM does not ask to load filament verticies when open as stack

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment
Labels: bug

#23 - Automatic matching of tomograms

Issue - State: closed - Opened by thorstenwagner over 1 year ago
Labels: enhancement, usability

#21 - Linking does not work with tomograms

Issue - State: closed - Opened by thorstenwagner over 1 year ago
Labels: bug

#20 - Problem when loading filaments with File -> Open File

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment
Labels: bug

#19 - Merge setup.cfg

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment

#18 - Load filament verticis from cbox as shapes layer

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 7 comments

#17 - Fix issue 16

Pull Request - State: closed - Opened by mstabrin over 1 year ago - 3 comments

#16 - Visualiziation of filtered layers is broken

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment

#15 - Fix issue 14

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#14 - Visibilty problem with multiple open tomograms

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 2 comments
Labels: bug

#13 - fixing issue #12

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago

#12 - File -> Open Folder opens multiple Tomograms as channels

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment
Labels: bug

#11 - Filament verticis

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment

#10 - Implement writing cryosparc coordinate files

Issue - State: open - Opened by thorstenwagner over 1 year ago - 2 comments
Labels: enhancement

#9 - improved plotting

Pull Request - State: closed - Opened by mstabrin over 1 year ago - 2 comments

#8 - Picking table does not get updated when Slices: Occupied is selected

Issue - State: open - Opened by thorstenwagner over 1 year ago - 1 comment
Labels: bug

#7 - use get_max_ceil instead of get_max_floor

Pull Request - State: closed - Opened by thorstenwagner over 1 year ago - 1 comment
Labels: bug

#6 - Allow loading of filaments as shapes layer

Issue - State: closed - Opened by thorstenwagner over 1 year ago - 4 comments
Labels: enhancement

#5 - Unmess thorsten

Pull Request - State: closed - Opened by thorstenwagner almost 2 years ago

#4 - Hierachical linking should work now

Pull Request - State: closed - Opened by thorstenwagner almost 2 years ago - 1 comment

#3 - Add mrci file conversion

Pull Request - State: closed - Opened by mstabrin almost 2 years ago

#2 - Add tiff support

Pull Request - State: closed - Opened by thorstenwagner almost 2 years ago

#1 - Fix the issues

Pull Request - State: closed - Opened by mstabrin about 2 years ago