MPAS-Dev/MPAS-Analysis issues and pull requests

#149 - climatology startYear and endYear

Issue - State: closed - Opened by xylar over 7 years ago - 12 comments
Labels: bug

#148 - Update MOC time series file caching

Pull Request - State: closed - Opened by xylar over 7 years ago - 14 comments
Labels: enhancement, clean up

#147 - Add Remapper class to do remapping internally in python

Pull Request - State: closed - Opened by xylar over 7 years ago - 31 comments
Labels: enhancement, priority

#146 - Adds capability for NINO34 index and spectra plots

Pull Request - State: closed - Opened by vanroekel over 7 years ago - 46 comments
Labels: enhancement

#145 - MOC analysis corrupts mask file on anvil

Issue - State: closed - Opened by vanroekel over 7 years ago - 18 comments

#144 - MOC computation reads same climatology for separate test cases

Issue - State: closed - Opened by vanroekel over 7 years ago - 16 comments

#143 - Support ACME short-term archiving

Issue - State: closed - Opened by milenaveneziani over 7 years ago - 6 comments

#142 - Simplify ncremap output?

Issue - State: closed - Opened by pwolfram over 7 years ago - 5 comments
Labels: solution under review

#141 - Add option to plot sea ice time series on polar plots

Pull Request - State: closed - Opened by akturner over 7 years ago - 20 comments
Labels: enhancement

#140 - Config file in wrong place?

Issue - State: closed - Opened by pwolfram over 7 years ago - 3 comments

#139 - Add moc script (postprocessing) and plot_vertical_section

Pull Request - State: closed - Opened by milenaveneziani over 7 years ago - 39 comments
Labels: enhancement, clean up, priority

#138 - Check for esmf and nco before performing interpolation

Pull Request - State: closed - Opened by xylar over 7 years ago - 4 comments
Labels: enhancement

#137 - Fix tick marks on the x axis of time series plots

Pull Request - State: closed - Opened by xylar over 7 years ago - 10 comments
Labels: bug, priority

#136 - Missing xticks in timeseries plots

Issue - State: closed - Opened by milenaveneziani over 7 years ago - 21 comments

#135 - Fixes titan config file

Pull Request - State: closed - Opened by vanroekel over 7 years ago

#134 - MPAS-Analysis does not run on OLCF

Issue - State: closed - Opened by vanroekel over 7 years ago - 37 comments

#133 - Break analysis tasks into smaller subtasks

Issue - State: closed - Opened by xylar over 7 years ago - 4 comments

#132 - Fix bounds of results from replicate_cycle

Pull Request - State: closed - Opened by xylar over 7 years ago - 4 comments
Labels: bug

#131 - Fix colorbars for ocean climatology bias maps

Pull Request - State: closed - Opened by xylar over 7 years ago - 12 comments
Labels: bug

#130 - Include config.default in all runs

Pull Request - State: closed - Opened by xylar over 7 years ago - 15 comments
Labels: enhancement

#129 - Add support for running tasks in parallel

Pull Request - State: closed - Opened by xylar over 7 years ago - 48 comments
Labels: enhancement, priority

#128 - Switch analysis tasks to be classes

Pull Request - State: closed - Opened by xylar over 7 years ago - 24 comments
Labels: enhancement, priority

#127 - Design Document: Analysis Task Template

Pull Request - State: closed - Opened by xylar over 7 years ago - 13 comments
Labels: design document, design finalized

#126 - Monthly files with more than one time entry die with unhelpful error

Issue - State: closed - Opened by mark-petersen over 7 years ago - 9 comments
Labels: bug, wontfix, mpas_xarray

#125 - anvil error in open_multifile_dataset

Issue - State: closed - Opened by mark-petersen over 7 years ago - 6 comments

#124 - Fix bug in sea ice analysis with oceanStreams

Pull Request - State: closed - Opened by xylar over 7 years ago - 14 comments
Labels: bug

#123 - Switch climatology interpolation to use ncremap

Pull Request - State: closed - Opened by xylar over 7 years ago - 50 comments
Labels: enhancement

#122 - seaice_timeseries.replicate_cycles is producing a plot that is too long

Issue - State: closed - Opened by xylar over 7 years ago - 8 comments
Labels: bug

#121 - Fix handling of bool in config parser getWithDefault

Pull Request - State: closed - Opened by xylar over 7 years ago - 1 comment
Labels: bug

#120 - OHC and MOC computations should use zMid or similar rather than refBottomDepth

Issue - State: open - Opened by xylar over 7 years ago - 1 comment
Labels: bug, low priority, sub-ice-shelf

#119 - Cannot use analysis package until first successful restart write

Issue - State: closed - Opened by vanroekel over 7 years ago - 15 comments
Labels: wontfix

#118 - Consider separating default and run-specific parts of config files

Issue - State: closed - Opened by xylar almost 8 years ago - 3 comments
Labels: enhancement

#117 - Modularize ocean and sea ice climatology computations

Pull Request - State: closed - Opened by xylar almost 8 years ago - 10 comments
Labels: clean up

#116 - Config error when running for sea ice standalone.

Issue - State: closed - Opened by akturner almost 8 years ago - 5 comments

#115 - Removed necessity of having ocean streams file for seaice analysis

Pull Request - State: closed - Opened by akturner almost 8 years ago - 9 comments
Labels: bug

#114 - Computation of climatologies via functions

Issue - State: closed - Opened by pwolfram almost 8 years ago - 2 comments
Labels: clean up

#113 - Cleanup hard-coded constants

Issue - State: closed - Opened by pwolfram almost 8 years ago - 2 comments
Labels: clean up

#112 - Design Document: Task parallelism

Pull Request - State: closed - Opened by xylar almost 8 years ago - 8 comments
Labels: design document

#111 - Replace the Time coordinate in MPAS xarray datasets to days since 0001-01-01

Pull Request - State: closed - Opened by xylar almost 8 years ago - 12 comments
Labels: enhancement, mpas_xarray

#110 - Fix time slicing of first year in OHC

Pull Request - State: closed - Opened by xylar almost 8 years ago - 2 comments
Labels: bug

#109 - Update generate option for G240km on LANL IC

Pull Request - State: closed - Opened by xylar almost 8 years ago - 3 comments
Labels: clean up

#108 - Design Document: Moving variable mapping out of mpas_xarray

Pull Request - State: closed - Opened by xylar almost 8 years ago - 6 comments
Labels: mpas_xarray, design document

#107 - Define iceConc/iceThick filenames in config rather than in modelvsobs

Pull Request - State: closed - Opened by milenaveneziani almost 8 years ago - 8 comments
Labels: clean up

#106 - Define obs files for iceConcentration and iceThickness in the config file

Issue - State: closed - Opened by milenaveneziani almost 8 years ago - 1 comment

#105 - Design Document: Generalize Calendar supported by Analysis

Pull Request - State: closed - Opened by xylar almost 8 years ago - 6 comments
Labels: mpas_xarray, design document

#104 - Move variable mapping out of mpas_xarray into new generalized_reader module

Pull Request - State: closed - Opened by xylar almost 8 years ago - 30 comments
Labels: clean up, mpas_xarray

#103 - Design Document: reorganizing timekeeping

Pull Request - State: closed - Opened by xylar almost 8 years ago - 8 comments
Labels: design document

#102 - A reorganization of timekeeping to work with general calendars

Pull Request - State: closed - Opened by xylar almost 8 years ago - 12 comments
Labels: clean up

#101 - divide by zero in SSS climatology analysis

Issue - State: closed - Opened by xylar almost 8 years ago - 6 comments
Labels: bug

#100 - Docstrings aren't using standard formatting

Issue - State: closed - Opened by xylar almost 8 years ago - 5 comments
Labels: solution under review

#99 - Date class only supports 365 day calendar

Issue - State: closed - Opened by xylar almost 8 years ago - 1 comment

#98 - Increased safety for config with numpy eval

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 1 comment
Labels: bug

#97 - Add month coord in MLD observations

Pull Request - State: closed - Opened by xylar almost 8 years ago - 7 comments
Labels: bug

#96 - Fix mpas_xarray test for selvals

Pull Request - State: closed - Opened by xylar almost 8 years ago - 5 comments
Labels: bug

#95 - CI fails with latest version of xarray

Issue - State: closed - Opened by xylar almost 8 years ago - 8 comments
Labels: bug

#94 - Document configuration options used for analysis runtime

Issue - State: closed - Opened by pwolfram almost 8 years ago - 7 comments

#93 - Add global moc postprocess

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 11 comments
Labels: enhancement, in progress

#92 - Specify and apply numpy commands in config files

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 11 comments
Labels: enhancement

#91 - Design Document: Config File Reorganization

Pull Request - State: closed - Opened by xylar almost 8 years ago - 4 comments
Labels: design document

#90 - Design Document: Generalized Horizontal Interpolation

Pull Request - State: closed - Opened by xylar almost 8 years ago - 8 comments
Labels: design document

#89 - Design Document: Config File Reorganization

Issue - State: closed - Opened by xylar almost 8 years ago - 4 comments
Labels: design document

#88 - Design Document: Generalized Horizontal Interpolation

Issue - State: closed - Opened by xylar almost 8 years ago - 4 comments
Labels: design document

#87 - Adds an example markdown design doc template

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 9 comments
Labels: enhancement, design document

#86 - Reorganize config.tempalate (formerly config.analysis)

Pull Request - State: closed - Opened by xylar almost 8 years ago - 32 comments
Labels: enhancement, clean up

#85 - Fix bug in Date.to_timedelta

Pull Request - State: closed - Opened by xylar almost 8 years ago - 7 comments
Labels: bug, clean up

#84 - Clean up some PEP8 and fix a few typos

Pull Request - State: closed - Opened by xylar almost 8 years ago - 3 comments
Labels: clean up

#83 - Fixes yr_offset issue between obs and model data

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 11 comments
Labels: bug

#82 - Switch time variable to use netcdftime.datetime and reference dates

Pull Request - State: closed - Opened by xylar almost 8 years ago - 18 comments
Labels: enhancement, help wanted, in progress, mpas_xarray

#81 - Analysis system chokes in sea ice timeseries for 2000 date data

Issue - State: closed - Opened by akturner almost 8 years ago - 11 comments
Labels: bug, mpas_xarray

#80 - Default config.analysis has un-useful default values

Issue - State: closed - Opened by akturner almost 8 years ago - 5 comments

#79 - Adds script to interp from coarse to fine grid

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 3 comments
Labels: enhancement, non-workflow

#78 - Switch meshfile to ocean (or sea ice) restart file

Pull Request - State: closed - Opened by xylar almost 8 years ago - 6 comments

#77 - Remove dependency on meshfile in ocean_modelvsobs.py

Issue - State: closed - Opened by milenaveneziani almost 8 years ago - 2 comments

#76 - Clean up tests

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 3 comments
Labels: clean up

#75 - Merge develop into master (Jan 17)

Pull Request - State: closed - Opened by milenaveneziani almost 8 years ago - 9 comments

#74 - Merge develop into master (Jan 17)

Pull Request - State: closed - Opened by milenaveneziani almost 8 years ago - 1 comment

#73 - Analysis system creates directories in my home directory

Issue - State: closed - Opened by akturner almost 8 years ago - 2 comments

#72 - Ensures that subseted datasets are non-empty

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 4 comments
Labels: clean up

#71 - Change sea ice concentration colorbar label to 'fraction'

Pull Request - State: closed - Opened by matthewhoffman almost 8 years ago - 2 comments
Labels: clean up

#70 - Sea ice concentration colorbar label should be 'fraction'

Issue - State: closed - Opened by matthewhoffman almost 8 years ago - 2 comments

#69 - Iteration of sea-ice observational time series appears incorrect

Issue - State: closed - Opened by milenaveneziani almost 8 years ago - 43 comments

#68 - Improved plotting of timeseries

Pull Request - State: closed - Opened by milenaveneziani almost 8 years ago - 23 comments
Labels: bug, enhancement

#67 - Use restart file over input file for vertical mesh

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 2 comments
Labels: clean up

#66 - Fixes a faulty merge that corrupts ds.Time

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 3 comments
Labels: bug

#65 - Adds vim markers to functions for consistency

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 1 comment
Labels: clean up

#64 - Returns error for invalid path in streams file

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 2 comments
Labels: bug, clean up

#63 - Merge develop to master (Dec 20)

Pull Request - State: closed - Opened by milenaveneziani almost 8 years ago - 22 comments

#62 - Update Seaice variables for timeseries

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 16 comments
Labels: enhancement

#61 - Fix start time in replicte_cycle for sea-ice data

Pull Request - State: closed - Opened by xylar almost 8 years ago - 3 comments
Labels: bug

#60 - Timeseries data go from Jan of yr1 to Jan of yr2+1, instead of Dec of yr2

Issue - State: closed - Opened by milenaveneziani almost 8 years ago - 3 comments
Labels: bug

#59 - Timeseries plots start from year 1 even if timeseries_yr1 is not 1

Issue - State: closed - Opened by milenaveneziani almost 8 years ago - 4 comments
Labels: bug

#58 - Clean return for specific analysis if a specific AM turned off in model

Issue - State: closed - Opened by pwolfram almost 8 years ago - 5 comments

#57 - Fixes bug in SST bias plots

Pull Request - State: closed - Opened by vanroekel almost 8 years ago - 10 comments
Labels: bug

#56 - Incorrect value of nVertLevels used in for temperature in ocean_modelvsobs

Issue - State: closed - Opened by vanroekel almost 8 years ago - 3 comments

#55 - Adds SSS model vs obs capability

Pull Request - State: closed - Opened by vanroekel almost 8 years ago - 21 comments
Labels: enhancement

#54 - Add elementType flag to getExpression

Pull Request - State: closed - Opened by pwolfram almost 8 years ago

#53 - Adds matpltlib to CI req for mpas_xarray testing

Pull Request - State: closed - Opened by pwolfram almost 8 years ago - 2 comments
Labels: bug, enhancement

#52 - Map variables and streams from MPAS dycore names to MPAS-Analysis names

Pull Request - State: closed - Opened by xylar almost 8 years ago - 14 comments
Labels: enhancement, clean up, mpas_xarray

#51 - Make run_analysis.py PEP8 compliant

Pull Request - State: closed - Opened by xylar almost 8 years ago - 3 comments
Labels: clean up

#50 - Switch from getlist to getExpression in config parser

Pull Request - State: closed - Opened by xylar almost 8 years ago - 12 comments
Labels: enhancement, clean up

GitHub / MPAS-Dev/MPAS-Analysis issues and pull requests