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GitHub / MIT-LCP/wfdb-python issues and pull requests

#541 - WIP: Add support for reading and writing .wfdb archive files

Pull Request - State: open - Opened by tompollard 3 months ago

#539 - Correct docstring for plot.py

Pull Request - State: closed - Opened by johndgiese 3 months ago - 1 comment

#538 - Python integer 512 out of bounds for uint8

Issue - State: open - Opened by marahman30104 3 months ago - 2 comments

#537 - Read The Docs workflow - upgrade from deprecated Ubuntu version

Pull Request - State: closed - Opened by briangow 3 months ago

#536 - Add `fsspec` to Read The Docs requirement

Pull Request - State: closed - Opened by briangow 3 months ago - 1 comment

#535 - Bump version to 4.3.0

Pull Request - State: closed - Opened by briangow 4 months ago

#534 - Use a single `path` argument (and deprecate `pn_dir` and `file_name`)

Issue - State: open - Opened by tompollard 4 months ago - 3 comments

#533 - the valid range of A（annotation type value）

Issue - State: open - Opened by fosaken 5 months ago

#532 - Lab | PDS | 3

Issue - State: open - Opened by nnneky 5 months ago

#531 - Bugfix: Update summary printing when writing EDF files.

Pull Request - State: open - Opened by SamJelfs 6 months ago

#530 - Bump Sphinx to 7.0.0

Pull Request - State: closed - Opened by tompollard 6 months ago - 1 comment

#529 - Adds changelog for v4.2.0.

Pull Request - State: closed - Opened by tompollard 6 months ago - 3 comments

#528 - HeaderSyntaxError encountered when processing the PTB-XL+ database

Issue - State: open - Opened by wenh06 6 months ago - 1 comment

#527 - Change in type promotion introduced in Numpy 2.0. Fixes to edf.py.

Pull Request - State: closed - Opened by tompollard 6 months ago - 3 comments

#526 - copy ricker wavelet from scipy which removed it from version 1.15.0

Pull Request - State: closed - Opened by wenh06 6 months ago - 3 comments

#525 - The ricker wavelet is removed from scipy.signal from version 1.15

Issue - State: closed - Opened by wenh06 6 months ago - 2 comments

#524 - OverflowError on wfdb.rdann()

Issue - State: closed - Opened by marty-thane 7 months ago - 4 comments

#523 - Integrate `fsspec` to enable accessing WFDB files from cloud URIs

Pull Request - State: closed - Opened by briangow 7 months ago - 10 comments

#522 - OverflowError with rdann on LUED annotations w/numpy 2.2

Issue - State: open - Opened by justinrporter 7 months ago - 3 comments

#519 - Fix selection of channels when converting to EDF

Pull Request - State: closed - Opened by SamJelfs 8 months ago - 1 comment

#518 - Unable to choose channels when converting to EDF.

Issue - State: closed - Opened by SamJelfs 8 months ago

#515 - calc_adc_params can produce off-by-one problems, crashing wrsamp

Issue - State: open - Opened by Ivorforce 9 months ago - 1 comment

#514 - Corrected typo and extended allowed types for MultiSegmentRecord

Pull Request - State: closed - Opened by agent3gatech 9 months ago - 2 comments

#512 - Allow expanded physical signal in `calc_adc_params`

Pull Request - State: closed - Opened by briangow 9 months ago - 2 comments

#511 - Bump dependencies for NumPy 2 compatibility

Pull Request - State: closed - Opened by cbrnr 9 months ago - 17 comments

#510 - Add capability to write signal with unique `samps_per_frame` to `wfdb.io.wrsamp`

Pull Request - State: closed - Opened by briangow 10 months ago - 6 comments

#509 - Test round-trip write/read of supported binary formats

Pull Request - State: closed - Opened by bemoody 10 months ago

#508 - Change in type promotion. Fixes to edf.py

Pull Request - State: closed - Opened by tompollard 10 months ago

#507 - Change in type promotion. Fixes to _signal.py

Pull Request - State: closed - Opened by tompollard 10 months ago - 1 comment

#506 - Change in type promotion. Fixes to annotation.py

Pull Request - State: closed - Opened by tompollard 10 months ago - 11 comments

#505 - Add NumPy 2 support

Pull Request - State: closed - Opened by cbrnr 10 months ago - 3 comments

#504 - Use uv

Pull Request - State: closed - Opened by cbrnr 10 months ago - 7 comments

#503 - README improvements

Pull Request - State: closed - Opened by bemoody 10 months ago - 1 comment

#502 - Fix warnings

Pull Request - State: closed - Opened by cbrnr 10 months ago - 1 comment

#501 - Cannot initialize project with poetry

Issue - State: closed - Opened by cbrnr 10 months ago - 9 comments

#499 - Fix: Indent code to ensure 'j' is within for-loop in GQRS algorithm

Pull Request - State: closed - Opened by tompollard about 1 year ago

#498 - Streamline file reading to use io streams

Pull Request - State: open - Opened by Ivorforce about 1 year ago

#497 - Bump version to v4.2.0 and update notes on creating new releases

Pull Request - State: closed - Opened by tompollard about 1 year ago - 3 comments

#495 - Update actions to use actions/checkout@v3 and actions/setup-python@v4.

Pull Request - State: closed - Opened by tompollard about 1 year ago - 1 comment

#494 - Set upper bound on Numpy version (numpy = ">=1.10.1,<2.0.0"). Ref #493.

Pull Request - State: closed - Opened by tompollard about 1 year ago - 1 comment

#493 - OverflowError: Python integer 256 out of bounds for uint8

Issue - State: open - Opened by cve2022 about 1 year ago - 13 comments

#492 - Add write_dir argument to csv_to_wfdb. Fixes #67.

Pull Request - State: closed - Opened by tompollard about 1 year ago - 7 comments

#491 - Add sig and hea stream parameters to rdrecord, rdheader and rdann

Pull Request - State: open - Opened by Ivorforce about 1 year ago - 2 comments

#490 - csv_to_wfdb writes to current dir; needs param to specify output folder

Issue - State: open - Opened by jshaffer94247 about 1 year ago - 3 comments

#489 - Fix: Indent code to ensure 'j' is within for-loop in GQRS algorithm

Pull Request - State: closed - Opened by Biboulder about 1 year ago - 2 comments

#488 - Broken with libFLAC 1.4.0 through 1.4.2 ("internal psf_fseek() failed")

Issue - State: open - Opened by bemoody about 1 year ago - 11 comments

#486 - Broken with libFLAC < 1.4.0 ("internal psf_fseek() failed")

Issue - State: open - Opened by bemoody about 1 year ago - 4 comments

#485 - Handle all-NaN channels in calc_adc_params

Issue - State: open - Opened by bemoody about 1 year ago - 1 comment

#484 - rdsamp and wrsamp not isopmorphic

Issue - State: open - Opened by greenstick about 1 year ago - 4 comments

#483 - FLAC Writing is not supported.

Issue - State: open - Opened by johnclawrence over 1 year ago - 2 comments

#482 - Update style

Pull Request - State: closed - Opened by bemoody over 1 year ago

#481 - Fix NaN handling in Record.adc, and other fixes

Pull Request - State: closed - Opened by bemoody over 1 year ago - 4 comments

#480 - Record.adc: RuntimeWarning: invalid value encountered in cast

Issue - State: closed - Opened by bemoody over 1 year ago - 2 comments

#479 - ann2rr returns ghost beats

Issue - State: open - Opened by OliverFaust over 1 year ago

#477 - build(deps): bump readthedocs-sphinx-search from 0.1.1 to 0.3.2 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#475 - handling local headers of mit bih database

Pull Request - State: closed - Opened by Cheppy over 1 year ago - 3 comments

#472 - Use numpydoc to render documentation

Pull Request - State: closed - Opened by SnoopJ over 1 year ago - 1 comment

#470 - Correct sampto behaviour using rdsamp and rdann?

Issue - State: open - Opened by kevindlau over 1 year ago - 2 comments

#469 - Unable to write WFDB with subtyp = -1

Issue - State: closed - Opened by vinay-hebb over 1 year ago - 1 comment

#468 - Advanced Scientific Data Format

Issue - State: open - Opened by tompollard over 1 year ago

#467 - Accessing a file in a subfolder on PhysioNet using pn_dir

Issue - State: open - Opened by alistairewj over 1 year ago - 2 comments

#466 - mimic3wdb-matched RECORDS file hast too many entries

Issue - State: open - Opened by tecamenz almost 2 years ago - 1 comment

#465 - fix for MIT-LCP/wfdb-python/issues/452

Pull Request - State: closed - Opened by tecamenz almost 2 years ago - 1 comment

#463 - Updated checksum Calculation function: calc_checksum

Pull Request - State: closed - Opened by deepanshi-s about 2 years ago - 1 comment

#462 - Convert the dataset in hdf5 format to hea format

Issue - State: open - Opened by rdyan0053 about 2 years ago - 3 comments

#461 - wrann ValueError

Issue - State: open - Opened by toiflm about 2 years ago - 1 comment

#460 - bug-fix: Pandas set indexing error

Pull Request - State: closed - Opened by ajadczaksunriselabs about 2 years ago - 2 comments

#459 - bug-fix: Numpy ValueError when cheking empty list equality

Pull Request - State: closed - Opened by ajadczaksunriselabs about 2 years ago - 4 comments

#458 - One malformed signal in mimic3 matched?

Issue - State: open - Opened by covertg about 2 years ago - 1 comment

#457 - Bump version to 4.1.2. Add release notes to docs.

Pull Request - State: closed - Opened by tompollard about 2 years ago

#456 - fixing rounding errors in to_dataframe in wfdb records

Pull Request - State: open - Opened by lamawmouk about 2 years ago - 8 comments

#455 - Dev

Pull Request - State: closed - Opened by DmitryBunakov about 2 years ago

#454 - Use int64 instead of int for ann2rr

Pull Request - State: closed - Opened by bemoody about 2 years ago - 1 comment

#453 - error when running processing.ann2rr

Issue - State: closed - Opened by BarAbba39 about 2 years ago - 1 comment

#452 - Error when downloading records from the mimic3db database

Issue - State: closed - Opened by Favourj-bit about 2 years ago - 26 comments
Labels: bug

#451 - Add a test to check if wrsamp can write more than 8 channels to format 516

Pull Request - State: closed - Opened by alistairewj about 2 years ago - 2 comments

#450 - Handle more than 8 compressed signals in wrsamp

Pull Request - State: closed - Opened by bemoody about 2 years ago

#449 - Unexpected changes to checksum after `wrsamp`

Issue - State: closed - Opened by briangow about 2 years ago - 2 comments

#448 - Remove version caps

Pull Request - State: closed - Opened by cbrnr over 2 years ago - 5 comments

#447 - Allow pandas >= 2

Pull Request - State: closed - Opened by cbrnr over 2 years ago - 1 comment

#446 - Support for Pandas 2.0?

Issue - State: closed - Opened by hoechenberger over 2 years ago - 7 comments

#445 - Fix incorrect type annotations and type inference

Pull Request - State: closed - Opened by bemoody over 2 years ago

#444 - Rounding errors in to_dataframe

Issue - State: open - Opened by bemoody over 2 years ago

#442 - Reading MS signal metadata in rdheader

Issue - State: open - Opened by bemoody over 2 years ago