Ecosyste.ms: Issues

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GitHub / MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software issues and pull requests

#119 - 单细胞数据结果文件

Issue - State: open - Opened by ldan999 11 days ago - 3 comments

#118 - scRNA run结果解读

Issue - State: closed - Opened by ldan999 20 days ago - 3 comments

#117 - dnbc4tools installation issue

Issue - State: open - Opened by ErrolTian 22 days ago - 3 comments

#116 - Running the main workflow报错

Issue - State: closed - Opened by ldan999 23 days ago - 8 comments

#115 - 细胞数目和质量都很高

Issue - State: closed - Opened by LJIGDBLL 30 days ago - 5 comments

#114 - 关于dnbc4tools vdj run运行时间过长的咨询

Issue - State: closed - Opened by biginfor 30 days ago - 9 comments

#113 - How Does the Software Determine Beads Originate from the Same Cell?

Issue - State: open - Opened by lgchen-git about 1 month ago - 3 comments

#112 - dnbc4tools4下载报错

Issue - State: open - Opened by ldan999 about 1 month ago - 2 comments

#111 - dnbc4toolsv2.0.7 install

Issue - State: open - Opened by qwccccc about 1 month ago - 1 comment

#110 - Obtain transcript count matrics

Issue - State: open - Opened by hejian41 about 1 month ago - 4 comments

#109 - Concerns Regarding Differences Between V2.1.2 and V2.0.7 Pipelines

Issue - State: closed - Opened by Nh-code about 1 month ago - 2 comments

#108 - 建立参考基因组索引问题

Issue - State: closed - Opened by ldan999 about 1 month ago - 3 comments

#106 - 构建参考基因组索引所需内存

Issue - State: closed - Opened by ldan999 about 1 month ago - 2 comments

#105 - 关于软件是否存在checkpoint机制的询问

Issue - State: closed - Opened by biginfor about 1 month ago - 4 comments

#102 - dnbc4tools rna multi 不产生任何结果，但同时没有任何报错

Issue - State: closed - Opened by biginfor about 1 month ago - 2 comments

#101 - C4单细胞上游分析样本存在多个文件

Issue - State: closed - Opened by ldan999 about 1 month ago - 6 comments

#100 - 如何使用 scanpy 读取 raw_matrix下的文件？

Issue - State: open - Opened by zhoutianrui-tongji about 1 month ago - 4 comments

#99 - Output matrix with gene_id

Issue - State: open - Opened by ShuyangXu about 1 month ago - 1 comment

#98 - 来自不同分析版本的样品

Issue - State: closed - Opened by LJIGDBLL about 1 month ago - 2 comments

#97 - SAW-A10186 中途自动终止并报错。

Issue - State: open - Opened by LJIGDBLL about 1 month ago - 1 comment

#96 - C4单细胞上游分析提问

Issue - State: open - Opened by hswl1314 about 2 months ago - 2 comments

#95 - 请问如何将bam文件进行上游分析

Issue - State: open - Opened by GGG622188 about 2 months ago - 3 comments

#93 - NoDataError: empty CSV

Issue - State: open - Opened by peipp410 about 2 months ago - 6 comments

#92 - dnbc4tools run 报错 Error code: SAW-A10187

Issue - State: closed - Opened by sheny-bio about 2 months ago - 8 comments

#91 - add Custom gene to Reference, but filtered out in GTF file after mkgtf

Issue - State: closed - Opened by zclecle2 about 2 months ago - 4 comments

#90 - DNBSEQ-T7 platform demultiplexing

Issue - State: open - Opened by Maple-sakura 2 months ago - 4 comments

#88 - filter matrix 和 raw matrix有什么区别？

Issue - State: open - Opened by ultraypy 3 months ago - 3 comments

#87 - A question about multiple files of one sample

Issue - State: open - Opened by NJU-Bio-Info 3 months ago - 9 comments

#86 - Dnbc4 dev

Pull Request - State: closed - Opened by lishuangshuang0616 3 months ago

#85 - How to add a marker gene for building a custom reference for dnbc4tools?

Issue - State: closed - Opened by jiangjasson 3 months ago - 4 comments

#84 - ImportError:undefined symbol: BrotliSharedDictionaryDestroyInstance

Issue - State: closed - Opened by jiangjasson 3 months ago - 3 comments

#83 - dnbc4tools rna run 的时候报错：Signals.SIGABRT: 6

Issue - State: closed - Opened by YaoQiong1127 3 months ago - 18 comments

#82 - scATAC version 2.1.2 SIGNALS error description

Issue - State: open - Opened by lishuangshuang0616 3 months ago - 7 comments
Labels: bug

#81 - 请问注释的原理是什么

Issue - State: closed - Opened by ultraypy 4 months ago - 1 comment

#80 - subprocess.CalledProcessError

Issue - State: open - Opened by hullv 4 months ago - 5 comments

#79 - subprocess.CalledProcessError:

Issue - State: closed - Opened by hullv 4 months ago

#78 - how would you convert the output of dnbc2tools to count matrix

Issue - State: closed - Opened by sherry1000001 4 months ago - 8 comments

#77 - Command failed with exit code 255

Issue - State: closed - Opened by Arknights2 4 months ago - 9 comments

#75 - 使用PE100模式测序是否适用DNBc4tools

Issue - State: closed - Opened by Tc940417 5 months ago - 2 comments

#73 - Saturation problem

Issue - State: closed - Opened by hullv 5 months ago - 9 comments

#72 - ERROR when running dnbc4tools rna

Issue - State: closed - Opened by kobeho24 5 months ago - 13 comments

#71 - RNA velocity分析

Issue - State: closed - Opened by tyyl622 5 months ago - 6 comments

#70 - version 2.1.2

Pull Request - State: closed - Opened by lishuangshuang0616 5 months ago

#66 - BGISEQ-500/DNBSEQ-T7 platform demultiplexing

Issue - State: closed - Opened by Maple-sakura 6 months ago - 3 comments

#65 - Error code: SAW-A10400, get signal: 18

Issue - State: closed - Opened by Tc940417 6 months ago - 11 comments

#64 - dnbc4tools atac run 运行报错

Issue - State: closed - Opened by Ruvic-chen 6 months ago - 7 comments

#62 - BAM file generated by DNBelab

Issue - State: closed - Opened by TianYu-828 7 months ago

#60 - 如何通过调整拐点调整细胞数目

Issue - State: open - Opened by momo0519 8 months ago - 3 comments

#58 - dnbc4tools run 报错

Issue - State: open - Opened by owo12138 9 months ago - 37 comments

#57 - how to make this pipeline suitable for TE repeats quantification in genome

Issue - State: closed - Opened by HUNNNGRY 9 months ago - 1 comment

#56 - 运行run the main flow 报错

Issue - State: closed - Opened by owo12138 9 months ago - 2 comments

#55 - dnbc4rna run报错- data - ERROR Command failed with exit code -6

Issue - State: closed - Opened by ZiggeyQi 9 months ago - 18 comments

#53 - conda安装dnbc4tools环境报错

Issue - State: closed - Opened by ZiggeyQi 9 months ago - 2 comments

#52 - scATAC-seq bam file

Issue - State: closed - Opened by yc508 9 months ago - 4 comments

#51 - RUN error: count - ERROR Command failed with exit code 134

Issue - State: closed - Opened by zengh58 9 months ago - 12 comments

#50 - 关于参考基因组添加marker基因的问题

Issue - State: closed - Opened by hejian41 9 months ago - 6 comments

#49 - Unable to complete cDNA mapping!

Issue - State: closed - Opened by shaidulberg 9 months ago - 5 comments

#48 - 华大单细胞分析工具输入数据问题

Issue - State: closed - Opened by Zjianglin 9 months ago - 6 comments

#47 - bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0 problems

Issue - State: closed - Opened by Quianter 10 months ago - 4 comments

#46 - final.bam convert to fastq file

Issue - State: closed - Opened by Gordonlu66 10 months ago - 2 comments

#45 - 自己使用DNBC4tools的结果与公司返回的结果比较

Issue - State: closed - Opened by Bathroomboss 10 months ago - 8 comments

#44 - 再次请教技术老师，runRNA步骤大概需要使用多少内存呢？

Issue - State: closed - Opened by tyyl622 10 months ago - 14 comments

#43 - KeyError: 'index'

Issue - State: open - Opened by yc508 10 months ago - 1 comment

#41 - Error: package or namespace load failed for ‘Seurat’:

Issue - State: closed - Opened by yc508 10 months ago - 8 comments

#40 - Error in loadNamespace(x) : there is no package called ‘argparse’

Issue - State: closed - Opened by uddamvathanak 11 months ago - 3 comments

#39 - DNBC4tools run 步骤出现问题

Issue - State: open - Opened by momo0519 11 months ago - 3 comments

#38 - Can't recognize relative file paths [BUG]

Issue - State: closed - Opened by lishuangshuang0616 12 months ago

#37 - 报告中显示的细胞数量和doublets_info.txt中的细胞数相差很多

Issue - State: closed - Opened by antecede 12 months ago - 7 comments

#36 - analysis 这一步报错 No cells found

Issue - State: closed - Opened by Kellytian124 12 months ago - 3 comments

#35 - ATAC demo data

Issue - State: closed - Opened by m-fayer 12 months ago - 2 comments

#34 - Version 2.1.1

Pull Request - State: open - Opened by lishuangshuang0616 about 1 year ago

#33 - 生成的报告中有两个图中的文字不能显示

Issue - State: closed - Opened by Kellytian124 about 1 year ago - 6 comments

#32 - 使用final.bam文件运行velocyto

Issue - State: closed - Opened by Xixu551 about 1 year ago - 5 comments

#31 - conda环境安装dnbc4tools报错，以及dnbc4tools rna mkref报错

Issue - State: closed - Opened by Xixu551 about 1 year ago - 2 comments

#30 - singularity运行下Count步骤R包DropletUtils报错load failed导致

Issue - State: closed - Opened by HamletShaoE about 1 year ago - 3 comments

#29 - When Oligo reads are unavailable

Issue - State: closed - Opened by m-fayer about 1 year ago - 1 comment

#28 - Output files

Issue - State: closed - Opened by m-fayer about 1 year ago - 1 comment

#27 - What are the major differences to the previous software?

Issue - State: closed - Opened by m-fayer about 1 year ago - 2 comments

#24 - DNBCtools主程序（count）报错

Issue - State: closed - Opened by yuanmaomao2023 about 1 year ago - 5 comments

#23 - D2C软件输入文件为.bam 输出文件的.bam无内容。

Issue - State: closed - Opened by MitochondriaATP over 1 year ago - 2 comments

#22 - Error code: SAW-A10400，get signal: 15

Issue - State: open - Opened by Morriyaty over 1 year ago - 5 comments

#21 - fix conflict

Pull Request - State: closed - Opened by lishuangshuang0616 over 1 year ago

#20 - Error: Cannot find input file or dir ~/fastq/pig/Pig_spinal_cord_cDNA1_2.fq.gz.

Issue - State: closed - Opened by zhangw376 over 1 year ago - 2 comments