MG-RAST/MG-RAST-Tools issues and pull requests

#217 - mg-rast-tool vs mg-rast web page. Why such differences?

Issue - State: open - Opened by valei over 2 years ago

#216 - Problem in installing and using `m5nr-tools.pl` & is there any other way to translate m5nr ids to KEGG (KO) ids?

Issue - State: open - Opened by jialiu232 almost 3 years ago

#215 - ImportError when using "mg-inbox.py"

Issue - State: closed - Opened by SebH87 over 3 years ago - 2 comments

#214 - Maintenance update

Pull Request - State: open - Opened by wltrimbl almost 4 years ago

#213 - Maintenance update

Pull Request - State: closed - Opened by wltrimbl almost 4 years ago

#212 - Initial Dockerfile for tools

Pull Request - State: closed - Opened by wilke about 4 years ago

#211 - installing MG-RAST-Tools [Ubuntu 20.04 LTS]

Issue - State: closed - Opened by nataliagaeta29 about 4 years ago - 1 comment

#210 - Mg submit

Pull Request - State: closed - Opened by wltrimbl over 4 years ago

#209 - Fix argument-parsing bug, fix unicode encoding bug

Pull Request - State: closed - Opened by wltrimbl over 4 years ago

#208 - KeyError in md-download.py

Issue - State: closed - Opened by capoony over 4 years ago - 1 comment

#207 - biom_to_tab KeyError: 'matrix_type'

Issue - State: closed - Opened by Xiaoyu2425 over 4 years ago - 5 comments

#206 - Client maintenence

Pull Request - State: closed - Opened by wltrimbl almost 5 years ago

#205 - NEON script for uploading and submitting files to mgRast

Pull Request - State: open - Opened by natalie-robinson over 5 years ago

#204 - Maintenance update

Pull Request - State: closed - Opened by wltrimbl over 5 years ago

#203 - Error-Making request https://api.mg-rast.org//status/

Issue - State: closed - Opened by Jigyasa3 over 5 years ago - 2 comments

#202 - download json file(s) and upload it to Analysis for visualization

Issue - State: closed - Opened by Jigyasa3 over 5 years ago - 1 comment

#201 - Maintenance

Pull Request - State: closed - Opened by wltrimbl over 5 years ago

#200 - added excel-exporter

Pull Request - State: closed - Opened by wltrimbl over 5 years ago - 1 comment

#199 - Maintenance, removed dependency on legacy poster package

Pull Request - State: closed - Opened by wltrimbl almost 6 years ago

#198 - Some new tests, consistent use of argparse

Pull Request - State: closed - Opened by wltrimbl almost 6 years ago

#197 - minor search fix

Pull Request - State: closed - Opened by teharrison almost 6 years ago

#196 - update search script

Pull Request - State: closed - Opened by teharrison almost 6 years ago

#195 - remove depricated script

Pull Request - State: closed - Opened by teharrison almost 6 years ago

#194 - get_auth_token() is returning empty value

Issue - State: closed - Opened by fbcorrea almost 6 years ago - 2 comments

#193 - alpha version research object export

Pull Request - State: closed - Opened by teharrison almost 6 years ago

#192 - fix merge for BIOM files exported from UI

Pull Request - State: closed - Opened by teharrison almost 6 years ago

#191 - fix gzip upload

Pull Request - State: closed - Opened by teharrison about 6 years ago

#190 - updates / fixes

Pull Request - State: closed - Opened by teharrison over 6 years ago

#189 - ugly: trouble sorting, getting list of top taxa

Pull Request - State: closed - Opened by wltrimbl over 6 years ago - 1 comment

#188 - Line 194 Index Error for mg-get-annotation-set.py

Issue - State: closed - Opened by douglasscottsdsu over 6 years ago - 11 comments

#187 - Various matinenance patches

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#186 - list_all_mg.py is returning an incomplete list

Issue - State: closed - Opened by fbcorrea over 6 years ago - 1 comment

#185 - Changed mg-query to tolerate synchronous requests, fixed data structu…

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#184 - Added lost examples scripts

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#183 - changed parser for inbox return structure

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#182 - Stricter import syntax in python3; fixed mg-inbox and mg-submit

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#181 - mg-download.py

Issue - State: closed - Opened by kad-ecoli over 6 years ago - 2 comments

#180 - submitter fixes

Pull Request - State: closed - Opened by teharrison over 6 years ago

#179 - Get rid of awkward import mglib.mglib, make all includes explicit

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#178 - fix mglib import

Pull Request - State: closed - Opened by teharrison over 6 years ago

#177 - updates and fixes

Pull Request - State: closed - Opened by teharrison over 6 years ago

#176 - Switched SHOCK_API and hard-coded urls to mg-rast.org

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#175 - Change API target to mg-rast.org, https

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#174 - fix debug print

Pull Request - State: closed - Opened by teharrison over 6 years ago

#173 - minor bug fixes in submit

Pull Request - State: closed - Opened by teharrison over 6 years ago

#172 - Various fixes, including mg-submit

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#171 - Added issue_template

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#170 - Removed errant "mgm" in mg-download.py

Pull Request - State: closed - Opened by wltrimbl over 6 years ago

#169 - Whole project download issues

Issue - State: closed - Opened by DSWallach over 6 years ago - 2 comments

#168 - Finished merge; brought abundance-matrix up to date

Pull Request - State: closed - Opened by wltrimbl almost 7 years ago

#167 - Wills updates #164 with conflicts fixed

Pull Request - State: closed - Opened by teharrison almost 7 years ago

#166 - Wills updates #159 with conflicts fixed

Pull Request - State: closed - Opened by teharrison almost 7 years ago

#165 - Added setup.py, moved mglib library for setup.py install, fixed conflicts

Pull Request - State: closed - Opened by teharrison almost 7 years ago

#164 - Added tests, patches for eventual python3 compatibility

Pull Request - State: closed - Opened by wltrimbl almost 7 years ago - 1 comment

#163 - name change

Pull Request - State: closed - Opened by teharrison about 7 years ago

#162 - ebi submit updates

Pull Request - State: closed - Opened by teharrison about 7 years ago

#161 - submission fixes / project tool

Pull Request - State: closed - Opened by teharrison about 7 years ago

#160 - Create example data and environment

Pull Request - State: closed - Opened by wilke about 7 years ago

#159 - Add testing framework, Makefile

Pull Request - State: closed - Opened by wltrimbl about 7 years ago - 2 comments

#158 - Added setup.py, moved mglib library for setup.py install

Pull Request - State: closed - Opened by wltrimbl about 7 years ago - 1 comment

#157 - Key error in data structure

Pull Request - State: closed - Opened by rasmusagren over 7 years ago - 1 comment

#156 - Changed data structure on project page

Pull Request - State: closed - Opened by wltrimbl over 7 years ago

#155 - Error listing files in project

Issue - State: closed - Opened by gputzel over 7 years ago

#154 - how to use use ALLOW FILTERING in compare-taxa

Issue - State: closed - Opened by robertoorellanar over 7 years ago - 2 comments

#153 - parser for single-metagenome dense data matrices

Pull Request - State: closed - Opened by wltrimbl over 7 years ago

#152 - indexerror:list index out of range

Issue - State: closed - Opened by TYDSC over 7 years ago - 2 comments

#151 - API: annotation request fail after showing about 500 reads

Issue - State: closed - Opened by dloyola over 8 years ago - 2 comments

#150 - mg-download.py retrieves no data.

Issue - State: closed - Opened by phdegnan almost 9 years ago - 2 comments

#149 - Added MG-RAST class 3.6.1 presentaiton

Pull Request - State: closed - Opened by wltrimbl almost 9 years ago - 1 comment

#148 - New script

Pull Request - State: closed - Opened by wilke almost 9 years ago - 1 comment

#147 - fix variable namespace

Pull Request - State: closed - Opened by teharrison almost 9 years ago

#146 - Test for asynchronous in url in async_rest_api()

Pull Request - State: closed - Opened by wltrimbl about 9 years ago

#145 - New script

Pull Request - State: closed - Opened by wilke about 9 years ago