ME-ICA/mapca issues and pull requests

#64 - Updating style and python versions

Pull Request - State: closed - Opened by handwerkerd 8 months ago - 6 comments

#63 - Black and isort need to be rerun

Issue - State: closed - Opened by eurunuela 8 months ago

#62 - Fixed package publishing action

Pull Request - State: closed - Opened by eurunuela 11 months ago

#61 - Updated `pyproject.toml` and deleted files that are no longer necessary

Pull Request - State: closed - Opened by eurunuela about 1 year ago - 1 comment

#60 - Update package installation and minimum Python version

Issue - State: closed - Opened by eurunuela about 1 year ago

#59 - Change `n_features_` to `n_features_in_` for sklearn compatibility

Pull Request - State: closed - Opened by eurunuela about 1 year ago - 7 comments

#58 - `n_features_` from sklearn's PCA is deprecated

Issue - State: closed - Opened by eurunuela about 1 year ago

#57 - logging IID subsampling

Pull Request - State: closed - Opened by handwerkerd over 1 year ago - 3 comments

#56 - Option to set IID subsample

Pull Request - State: closed - Opened by handwerkerd over 1 year ago - 11 comments

#55 - Identified part of the issue with component misestimation

Issue - State: open - Opened by handwerkerd over 1 year ago

#54 - Remove DueCredit

Pull Request - State: closed - Opened by eurunuela over 1 year ago - 2 comments

#53 - Remove DueCredit dependency

Issue - State: closed - Opened by eurunuela over 1 year ago
Labels: enhancement, good first issue

#52 - python vs matlab

Pull Request - State: open - Opened by leandrolecca almost 2 years ago - 1 comment

#51 - Document typical results for different datasets/acquisition parameters

Issue - State: open - Opened by tsalo over 2 years ago - 1 comment
Labels: documentation

#50 - Return variance explained for all components

Pull Request - State: closed - Opened by eurunuela over 2 years ago - 2 comments

#49 - Compute PCA with all possible components then give solution with optimal number of selected criterion

Pull Request - State: closed - Opened by eurunuela over 2 years ago - 3 comments

#48 - Make optimal number of components of all criteria accessible

Pull Request - State: closed - Opened by eurunuela over 2 years ago - 4 comments

#47 - Made maPCA class accessible for other libraries

Pull Request - State: closed - Opened by eurunuela over 2 years ago

#46 - Add readthedocs page for mapca

Pull Request - State: open - Opened by eurunuela over 2 years ago - 2 comments
Labels: documentation

#45 - Fix failing tests due to make command not being installed

Pull Request - State: closed - Opened by eurunuela over 2 years ago - 2 comments

#44 - Tests fail due to make command not being installed

Issue - State: closed - Opened by eurunuela over 2 years ago
Labels: tests

#43 - Make criteria curves accessible as part of the mapca object

Pull Request - State: closed - Opened by eurunuela over 2 years ago - 2 comments

#42 - Documentation missing

Issue - State: open - Opened by eurunuela over 2 years ago - 4 comments
Labels: documentation

#41 - Remove commented code

Issue - State: open - Opened by tsalo over 3 years ago

#40 - [INFRA] Add contributors to Zenodo file

Pull Request - State: closed - Opened by tsalo over 3 years ago

#39 - Zenodo release

Issue - State: closed - Opened by tsalo over 3 years ago

#38 - [FIX] Drop setuptools version requirement

Pull Request - State: closed - Opened by tsalo over 3 years ago

#37 - [FIX] Minor changes to packaging files

Pull Request - State: closed - Opened by tsalo over 3 years ago

#36 - [MAINT] Add GPL license

Pull Request - State: closed - Opened by tsalo over 3 years ago - 19 comments

#35 - [REF] Use nilearn and images instead of arrays

Pull Request - State: open - Opened by tsalo over 3 years ago - 1 comment

#34 - Use nilearn's masking/unmasking functions internally

Issue - State: open - Opened by tsalo over 3 years ago

#33 - [FIX] Use new scaler to retain original unaltered scaler

Pull Request - State: closed - Opened by tsalo over 3 years ago - 1 comment

#32 - [ENH] Use images in MovingAveragePCA instead of arrays

Pull Request - State: closed - Opened by tsalo over 3 years ago
Labels: enhancement

#31 - Operate on images in subsampling function

Issue - State: open - Opened by tsalo over 3 years ago - 3 comments

#30 - Scaler parameters overridden within MovingAveragePCA

Issue - State: closed - Opened by tsalo over 3 years ago - 2 comments
Labels: bug

#29 - Make class accept images instead of arrays

Issue - State: closed - Opened by tsalo over 3 years ago - 3 comments
Labels: enhancement

#28 - Add citation and link to GIFT

Pull Request - State: closed - Opened by eurunuela over 3 years ago - 1 comment
Labels: documentation

#27 - Cite original maPCA paper and GIFT package

Issue - State: closed - Opened by eurunuela over 3 years ago
Labels: documentation

#26 - [TST] Add integration test

Pull Request - State: closed - Opened by eurunuela over 3 years ago - 23 comments
Labels: tests

#25 - [FIX] Add dimensionality bug fix

Pull Request - State: closed - Opened by eurunuela over 3 years ago - 4 comments

#24 - maPCA in tedana does not currently z-score data before performing PCA

Issue - State: closed - Opened by eurunuela over 3 years ago - 3 comments

#23 - [REF] Replace parzen window function with one from scipy

Pull Request - State: closed - Opened by notZaki over 3 years ago - 5 comments

#22 - [INFRA] Add deployment GitHub Action

Pull Request - State: closed - Opened by tsalo over 3 years ago - 4 comments

#21 - [ENH] Replace kurtosis function with scipy one

Pull Request - State: closed - Opened by eurunuela over 3 years ago - 3 comments
Labels: enhancement

#20 - Allow utils._subsampling to accept ndarray

Pull Request - State: closed - Opened by notZaki over 3 years ago - 8 comments

#19 - [TST] Add integration tests

Pull Request - State: closed - Opened by eurunuela over 3 years ago
Labels: tests

#18 - Skip parzen_win steps if sm_window is false

Pull Request - State: closed - Opened by notZaki over 3 years ago - 2 comments
Labels: enhancement

#17 - Replacing utils._kurtn with scipy.stats.kurtosis

Issue - State: closed - Opened by notZaki over 3 years ago - 5 comments

#16 - [BUG] Dimensions of masked data not considered for fit_transform

Issue - State: closed - Opened by eurunuela over 3 years ago - 3 comments
Labels: bug

#15 - Use 3D fftconvolve instead of slice-wise 2D fftconvolve

Pull Request - State: closed - Opened by notZaki over 3 years ago - 3 comments

#14 - [TST] Add test for MovingAveragePCA class

Pull Request - State: closed - Opened by tsalo over 3 years ago - 1 comment

#13 - [FIX] Tests import module from wrong location

Pull Request - State: closed - Opened by notZaki over 3 years ago - 3 comments
Labels: tests

#12 - Codecov not working

Issue - State: closed - Opened by eurunuela over 3 years ago
Labels: bug

#11 - [TST] Set up continuous integration

Pull Request - State: closed - Opened by eurunuela over 3 years ago - 1 comment
Labels: tests

GitHub / ME-ICA/mapca issues and pull requests