Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MDAnalysis/UserGuide issues and pull requests

#401 - Replace fastener dependency with filelock

Pull Request - State: closed - Opened by yuxuanzhuang about 1 month ago

#400 - Replace fasteners dependency to filelock

Issue - State: open - Opened by yuxuanzhuang about 1 month ago

#398 - Update snapthots and add release notes for MDAnalysis 2.8.0

Pull Request - State: closed - Opened by RMeli 3 months ago - 7 comments

#397 - Make a v2.8.0 release of the UserGuide

Issue - State: open - Opened by IAlibay 3 months ago - 9 comments

#396 - Snapshot tests are failing

Issue - State: closed - Opened by IAlibay 3 months ago - 1 comment

#395 - Removing material for modules moved to MDAKits?

Issue - State: open - Opened by fiona-naughton 4 months ago - 3 comments
Labels: analysis

#394 - Fix broken links for User Guide

Pull Request - State: closed - Opened by mhmohona 4 months ago - 4 comments

#393 - Fix Dead Links in MDAnalysis User Guide Documentation

Issue - State: closed - Opened by mhmohona 4 months ago - 3 comments

#392 - Update AUTHORS

Pull Request - State: closed - Opened by RubenChM 4 months ago

#391 - added white space

Pull Request - State: closed - Opened by mhmohona 4 months ago

#390 - Fixed `unknown target name` errors

Pull Request - State: closed - Opened by mhmohona 4 months ago - 2 comments

#389 - Fixed okwarning block warning

Pull Request - State: open - Opened by mhmohona 4 months ago - 3 comments

#388 - Use setup-python instead of setup-micromamba for pre-commit CI

Pull Request - State: closed - Opened by RMeli 4 months ago - 3 comments

#387 - Add reference to gromacs manual for xtc

Pull Request - State: closed - Opened by RubenChM 4 months ago - 3 comments

#386 - Fix duplicate level for `trajectory-similarity` level

Pull Request - State: open - Opened by mhmohona 5 months ago - 3 comments
Labels: close?

#385 - Remove substitution

Pull Request - State: closed - Opened by mhmohona 5 months ago - 1 comment

#384 - Fix code block alignment

Pull Request - State: closed - Opened by mhmohona 5 months ago

#383 - Black for developers

Pull Request - State: closed - Opened by RMeli 5 months ago - 2 comments

#382 - update lowercase

Pull Request - State: closed - Opened by mhmohona 5 months ago

#381 - Update link for GSoD 2019

Pull Request - State: closed - Opened by mhmohona 5 months ago - 1 comment

#380 - Documentation Bug: mis-capitalization of topology editing functions.

Issue - State: closed - Opened by JahmalEnnis 6 months ago - 1 comment
Labels: defect, good-first-issue

#379 - Add dask install dependency

Pull Request - State: closed - Opened by yuxuanzhuang 6 months ago

#378 - Specify :okwarning: as an option in the ipython:: block to suppress a warning

Issue - State: open - Opened by orbeckst 6 months ago
Labels: good-first-issue

#377 - Error in "code-block" directive

Issue - State: closed - Opened by orbeckst 6 months ago
Labels: defect, good-first-issue

#376 - Duplicate substitution definition name

Issue - State: closed - Opened by orbeckst 6 months ago
Labels: defect, good-first-issue

#375 - duplicate labels

Issue - State: open - Opened by orbeckst 6 months ago - 2 comments
Labels: defect, good-first-issue

#374 - unknown target name errors

Issue - State: closed - Opened by orbeckst 6 months ago - 1 comment
Labels: defect, good-first-issue

#373 - decouple User Guide releases from MDAnalysis library releases

Issue - State: closed - Opened by orbeckst 6 months ago - 3 comments

#372 - removed duplicated "Optional Tips & Tricks" section from doc guide

Pull Request - State: closed - Opened by orbeckst 6 months ago - 1 comment

#371 - Update all the install instructions

Pull Request - State: closed - Opened by IAlibay 6 months ago - 1 comment

#370 - fix installation instructions and recommend mamba instead of conda

Pull Request - State: closed - Opened by orbeckst 7 months ago - 8 comments

#369 - CI: RTD build fails due Python 3.9

Issue - State: closed - Opened by orbeckst 7 months ago - 1 comment

#368 - Develop installation instructions are outdated

Issue - State: closed - Opened by orbeckst 7 months ago - 18 comments

#367 - fix equation for RDF in average_rdf.ipynb

Pull Request - State: closed - Opened by orbeckst 10 months ago - 1 comment

#366 - Fix CI

Pull Request - State: closed - Opened by IAlibay 10 months ago - 4 comments

#365 - Update guessing docs

Issue - State: open - Opened by lilyminium 11 months ago - 2 comments

#364 - CI is failing

Issue - State: closed - Opened by IAlibay 11 months ago - 4 comments

#363 - Add LGPL and CC-BY-SA LICENSE

Pull Request - State: closed - Opened by RMeli about 1 year ago - 4 comments

#362 - Userguide is failing to deploy

Issue - State: open - Opened by IAlibay about 1 year ago - 8 comments

#361 - Recommend mamba over conda

Issue - State: closed - Opened by lilyminium about 1 year ago - 8 comments

#360 - Add Mike Henry to AUTHORS

Pull Request - State: closed - Opened by IAlibay about 1 year ago

#359 - include date in cache key

Pull Request - State: closed - Opened by mikemhenry about 1 year ago - 4 comments

#358 - Skip stderr checks in nbval

Pull Request - State: closed - Opened by IAlibay about 1 year ago - 3 comments

#357 - nbval errors on stderr output changes

Issue - State: closed - Opened by IAlibay about 1 year ago - 3 comments

#356 - Add TRC to core list

Pull Request - State: closed - Opened by IAlibay about 1 year ago

#355 - Turn off caching

Pull Request - State: closed - Opened by IAlibay about 1 year ago

#354 - Environment cache is not clearing properly

Issue - State: closed - Opened by IAlibay about 1 year ago

#353 - Add 2.7.0 release notes

Pull Request - State: closed - Opened by IAlibay about 1 year ago - 2 comments

#352 - TRC / gromos11 reader not listed under formats

Issue - State: closed - Opened by IAlibay about 1 year ago - 1 comment

#351 - Fix typo in gh dicussions target

Pull Request - State: closed - Opened by IAlibay about 1 year ago

#350 - 2.7.0 release

Issue - State: closed - Opened by IAlibay about 1 year ago - 8 comments

#349 - Replace mailing list with GitHub Discussions

Pull Request - State: closed - Opened by RMeli about 1 year ago - 1 comment

#348 - updated line length in code contrib section

Pull Request - State: closed - Opened by orbeckst about 1 year ago - 1 comment

#347 - update line length in Contributor guide

Issue - State: closed - Opened by orbeckst about 1 year ago - 10 comments

#346 - Fix by replacing tau_franes with tau_times

Pull Request - State: closed - Opened by pgbarletta about 1 year ago - 1 comment

#345 - Rerun diffusion_map.ipynb so tests pass

Pull Request - State: closed - Opened by pgbarletta about 1 year ago - 5 comments

#344 - An error in the example on the MDAnalysis user guide webpage

Issue - State: closed - Opened by Tennisatw about 1 year ago - 3 comments

#343 - [XLINK] An error in the example on the MDAnalysis user guide webpage

Issue - State: closed - Opened by hmacdope about 1 year ago - 1 comment

#342 - Diffusion map notebook tests fail

Issue - State: closed - Opened by IAlibay over 1 year ago

#341 - update FAQ / basic philosophy

Issue - State: open - Opened by orbeckst over 1 year ago - 1 comment

#340 - Detail the deployment workflow

Issue - State: open - Opened by IAlibay over 1 year ago - 3 comments

#339 - Add pseudo auto-generated notes for the 2.x+ release branch

Pull Request - State: closed - Opened by IAlibay over 1 year ago - 4 comments

#338 - Visible release updates info

Issue - State: closed - Opened by hp115 over 1 year ago - 2 comments

#337 - Info about different options to load GROMACS data

Issue - State: open - Opened by hp115 over 1 year ago - 1 comment

#336 - Passing atomgroup as argument

Issue - State: closed - Opened by melissakcl over 1 year ago

#335 - Fix the eof precommit failure

Pull Request - State: closed - Opened by IAlibay over 1 year ago

#334 - [user story] The process of a PR (core repo)

Issue - State: open - Opened by IAlibay over 1 year ago - 5 comments

#333 - [user story] The process of a PR (userguide)

Issue - State: open - Opened by IAlibay over 1 year ago - 1 comment

#332 - How to use internal links in Jupyter notebooks

Issue - State: open - Opened by lilyminium over 1 year ago

#331 - added unit info to quickstart

Pull Request - State: closed - Opened by micaela-matta over 1 year ago - 2 comments

#330 - Update user guide contributing docs

Pull Request - State: closed - Opened by lilyminium over 1 year ago - 5 comments

#329 - [User Story] Contributing data

Issue - State: open - Opened by IAlibay over 1 year ago

#328 - [User Story] Non-code contributions

Issue - State: open - Opened by IAlibay over 1 year ago - 2 comments

#327 - Contributing documentation story

Issue - State: open - Opened by lilyminium over 1 year ago

#326 - Units user story

Issue - State: open - Opened by lilyminium over 1 year ago - 1 comment

#325 - Add user story template

Pull Request - State: closed - Opened by lilyminium over 1 year ago

#324 - Update install instructions ahead of UGM

Pull Request - State: closed - Opened by IAlibay over 1 year ago - 4 comments

#323 - Have the right project slug on the rtd.yaml action

Pull Request - State: closed - Opened by IAlibay over 1 year ago - 5 comments

#322 - Update PDBQT reference

Pull Request - State: closed - Opened by pgbarletta over 1 year ago

#321 - Advertise mdakits

Pull Request - State: closed - Opened by lilyminium over 1 year ago - 2 comments

#320 - Link to MDAKits registry

Issue - State: closed - Opened by lilyminium over 1 year ago

#319 - Document chainID attribute on PDBQTParser

Issue - State: closed - Opened by pgbarletta over 1 year ago - 2 comments

#318 - Fix sphinx theme installation instructions

Pull Request - State: closed - Opened by pgbarletta over 1 year ago

#316 - Pin theme higher

Pull Request - State: closed - Opened by lilyminium over 1 year ago

#315 - Remove autogenerated files

Pull Request - State: closed - Opened by lilyminium over 1 year ago - 1 comment

#314 - Remove txt files

Issue - State: closed - Opened by lilyminium over 1 year ago

#313 - Document TPRParser sets chainID topology attr

Pull Request - State: closed - Opened by pgbarletta over 1 year ago - 1 comment

#312 - document TPRParser now setting chainID

Issue - State: closed - Opened by orbeckst over 1 year ago - 1 comment
Labels: atomgroup, topology

#311 - Dev builds using the new theme don't link to the old versions

Issue - State: closed - Opened by IAlibay over 1 year ago - 2 comments

#310 - Update python setup.py build_sphinx

Pull Request - State: closed - Opened by lilyminium over 1 year ago

#309 - Link to mda-sphinx-theme docs

Issue - State: open - Opened by lilyminium over 1 year ago

#308 - Move on from build_sphinx

Issue - State: closed - Opened by lilyminium over 1 year ago

#307 - Switch to mda theme

Pull Request - State: closed - Opened by lilyminium over 1 year ago - 2 comments

#306 - Document pytest and nbval

Pull Request - State: closed - Opened by pgbarletta over 1 year ago

#305 - Add RTD preview action

Pull Request - State: closed - Opened by IAlibay over 1 year ago - 1 comment

#304 - Pin docutils for now

Pull Request - State: closed - Opened by IAlibay over 1 year ago - 2 comments

#303 - Add docs for Cirrus wheels and making a UserGuide release

Pull Request - State: closed - Opened by IAlibay over 1 year ago

#302 - Add troubleshooting info to contribution docs

Pull Request - State: closed - Opened by ALescoulie over 1 year ago - 3 comments

#301 - refactor: python doc script classes

Pull Request - State: closed - Opened by jandom over 1 year ago - 8 comments