Ecosyste.ms: Issues

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GitHub / LuzieH/pytpt issues and pull requests

#44 - Solver for TPT for Markov jump processes

Issue - State: open - Opened by LuzieH about 4 years ago
Labels: enhancement

#42 - Reduce number of n loops for the finite time methods

Issue - State: closed - Opened by riberaborrell over 4 years ago - 3 comments

#41 - Irreducibility of a stochastic matrix.

Issue - State: closed - Opened by riberaborrell over 4 years ago - 2 comments

#40 - Examples as ipython notebooks

Issue - State: closed - Opened by LuzieH over 4 years ago

#39 - sparse TPT

Issue - State: open - Opened by LuzieH over 4 years ago
Labels: enhancement

#38 - transitionmatrix_2D() method

Issue - State: closed - Opened by riberaborrell over 4 years ago - 1 comment

#37 - bug with bbox_inches='tight'

Issue - State: closed - Opened by riberaborrell over 4 years ago - 1 comment
Labels: bug

#36 - Transition matrix methods not duplicated

Issue - State: closed - Opened by riberaborrell over 4 years ago

#35 - Choose new package name and class names

Issue - State: closed - Opened by LuzieH over 4 years ago - 1 comment

#34 - super class for the 3 cases. Subclasses inherit save and compute statistics.

Issue - State: closed - Opened by riberaborrell over 4 years ago
Labels: enhancement

#33 - compute_statistics methode and save_statistics methode

Issue - State: closed - Opened by riberaborrell over 4 years ago - 5 comments

#32 - folder structure

Issue - State: closed - Opened by riberaborrell over 4 years ago - 1 comment

#31 - colorbar for the network examples

Issue - State: closed - Opened by riberaborrell over 4 years ago

#30 - Write docstrings using Google Style

Issue - State: closed - Opened by riberaborrell over 4 years ago
Labels: enhancement

#28 - function descriptions

Issue - State: closed - Opened by LuzieH over 4 years ago

#27 - Videos of numerical examples

Issue - State: closed - Opened by LuzieH almost 5 years ago - 1 comment

#26 - Plot for introduction of paper

Issue - State: closed - Opened by LuzieH almost 5 years ago - 1 comment

#25 - Choosing Journal

Issue - State: closed - Opened by riberaborrell almost 5 years ago

#24 - Plotting (and shortest paths) of f^+ in the small network example (finite time and periodic)

Issue - State: closed - Opened by LuzieH almost 5 years ago - 1 comment
Labels: enhancement

#23 - computation of mean transition length

Issue - State: closed - Opened by LuzieH almost 5 years ago

#22 - Bifurcation in Triple well Example

Issue - State: closed - Opened by LuzieH almost 5 years ago - 1 comment

#21 - separate the plotting with the computation of the statistics

Issue - State: closed - Opened by riberaborrell almost 5 years ago

#20 - plot potential + forcing

Issue - State: closed - Opened by riberaborrell almost 5 years ago - 2 comments

#19 - add features to plot_convergence()

Issue - State: closed - Opened by riberaborrell almost 5 years ago - 1 comment

#18 - transition matrix from samples

Issue - State: closed - Opened by LuzieH almost 5 years ago

#17 - Move plot methods to a separate module.

Issue - State: closed - Opened by riberaborrell almost 5 years ago - 1 comment

#16 - change assert check on every method

Issue - State: closed - Opened by riberaborrell almost 5 years ago

#14 - finite-time triplewell: (a) extending time window (b) but time-inhomog.

Issue - State: closed - Opened by LuzieH almost 5 years ago - 1 comment

#13 - do we need current_dens() method in tpt?

Issue - State: closed - Opened by LuzieH almost 5 years ago - 1 comment

#12 - rewrite reac_density() for the three cases

Issue - State: closed - Opened by riberaborrell almost 5 years ago - 2 comments

#11 - generalize (periodic, finite-time) tpt code to work with time-dependent sets A and B

Issue - State: open - Opened by LuzieH almost 5 years ago
Labels: enhancement

#10 - visualization of the tpt triple well example

Issue - State: closed - Opened by LuzieH almost 5 years ago - 1 comment

#9 - time-inhomogeneous case for the small network example

Issue - State: closed - Opened by riberaborrell almost 5 years ago

#7 - Apply TPT to Langevin dynamics in a 3-well

Issue - State: closed - Opened by LuzieH almost 5 years ago

#6 - New plots for the network example

Issue - State: closed - Opened by riberaborrell almost 5 years ago - 4 comments

#5 - change enumeration of states (A=0, 1, 2, 3, B=4)

Issue - State: closed - Opened by riberaborrell almost 5 years ago

#4 - Package the project

Issue - State: closed - Opened by riberaborrell almost 5 years ago

#3 - Write tests

Issue - State: closed - Opened by riberaborrell almost 5 years ago - 15 comments

#2 - PEP8

Issue - State: closed - Opened by riberaborrell almost 5 years ago

#1 - migration to python3

Issue - State: closed - Opened by riberaborrell almost 5 years ago