LouisFaure/scFates issues and pull requests

#40 - Broken tree

Issue - State: open - Opened by izu0421 7 days ago

#39 - Impossible to run the tutorial Tree analysis - Bone marrow fates

Issue - State: closed - Opened by Pinpin797 23 days ago - 1 comment

#38 - Bump jinja2 from 3.1.4 to 3.1.5 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 month ago
Labels: dependencies

#37 - 3 milesones make error in scf.tl.linearity_deviation.

Issue - State: open - Opened by ChaewonKim99 3 months ago - 1 comment

#36 - tl.branch_specific issues

Issue - State: closed - Opened by AJTDaedalus 3 months ago - 2 comments

#35 - Compatibility Issue with pandas in scFates 1.0.8 while i use tl.test_fork

Issue - State: open - Opened by Almasimaryam 4 months ago - 5 comments

#34 - Fitting & clustering significant features color_exp

Issue - State: closed - Opened by pmarzano97 7 months ago - 1 comment

#33 - imcompatible with cellrank version2

Issue - State: closed - Opened by wangmhan 8 months ago - 1 comment

#32 - get a weird figure following the notebook named Bone marrow fates

Issue - State: open - Opened by huili469r 9 months ago - 1 comment

#31 - Bump jinja2 from 3.1.3 to 3.1.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#30 - Error when `scf.tl.dendrogram()`

Issue - State: closed - Opened by Fantasque68 11 months ago - 6 comments

#29 - Maximum complexity of trees [question]

Issue - State: open - Opened by vitkl 11 months ago - 2 comments

#28 - Cannot install with python 3.8, need python >=3.9

Issue - State: closed - Opened by quantumdot 12 months ago - 1 comment

#27 - KeyError: 'explode' exception while plotting clusters

Issue - State: closed - Opened by quantumdot 12 months ago - 3 comments

#26 - Bump jinja2 from 2.11.3 to 3.1.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#25 - Questions about scf.pl.single_trend'

Issue - State: closed - Opened by SummerColdWind about 1 year ago - 4 comments

#24 - `root` and `leaves` with `test_association()`

Issue - State: closed - Opened by james-cranley over 1 year ago - 2 comments

#23 - error while using scf.tl.linearity_deviation

Issue - State: closed - Opened by rLannes over 1 year ago - 4 comments

#22 - RecursionError: maximum recursion depth exceeded in scf.tl.slide_cells

Issue - State: closed - Opened by willey2020 over 1 year ago - 2 comments

#21 - scf.pl.trends error on jupyter notebook

Issue - State: closed - Opened by hw1804 over 1 year ago - 10 comments

#20 - GPU mode dependencies troubleshooting

Issue - State: closed - Opened by willey2020 over 1 year ago - 4 comments

#19 - issue with scf.tl.cluster and scf.pl.trends functions in notebook

Issue - State: closed - Opened by 16nikita over 1 year ago - 2 comments

#18 - crashes due to rpy2 not finding the R install on conda

Issue - State: closed - Opened by yedeer12 over 1 year ago - 1 comment

#17 - When running scf.tl.curve, module 'networkx' has no attribute 'to_scipy_sparse_matrix'

Issue - State: closed - Opened by yedeer12 over 1 year ago - 2 comments

#16 - dendrogram Tree line and cells are not alligned in the plot

Issue - State: closed - Opened by willey2020 over 1 year ago - 3 comments

#15 - error: keyword grid_b is not recognized with scf.pl.slide_cors

Issue - State: closed - Opened by pchiang5 almost 2 years ago - 2 comments

#14 - scf.tl.pseudotime error

Issue - State: closed - Opened by pchiang5 almost 2 years ago - 2 comments

#13 - Error in scf.tl.branch_specific

Issue - State: closed - Opened by min0609 almost 2 years ago - 1 comment

#12 - DLL load failed while importing _loess: The specified module could not be found.

Issue - State: closed - Opened by rajpiyush18 almost 2 years ago - 1 comment

#11 - Testing fit: KeyError: 'de_p'

Issue - State: closed - Opened by wbrett87 about 2 years ago - 5 comments

#10 - Error in sci.pl.single_trend

Issue - State: closed - Opened by PaulJonasJost about 2 years ago - 1 comment

#9 - scf.tl.pseudotime:ValueError: probabilities do not sum to 1

Issue - State: closed - Opened by annrosebright about 2 years ago - 1 comment

#8 - error in `pseudotime()`

Issue - State: closed - Opened by zoepiran over 2 years ago - 3 comments

#7 - error in test_association

Issue - State: closed - Opened by jksr over 2 years ago - 6 comments

#6 - Importing scFates

Issue - State: closed - Opened by sidrahmaryam-cyber over 2 years ago - 4 comments

GitHub / LouisFaure/scFates issues and pull requests