Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#485 - LFPBand() - specify query to fetch1

Issue - State: open - Opened by acomrie over 1 year ago - 2 comments
Labels: LFP

#484 - Update lfp.py for usability

Pull Request - State: closed - Opened by acomrie over 1 year ago

#483 - Need to document (in the docstrings) that the old pipelines are legacy pipelines.

Issue - State: closed - Opened by edeno over 1 year ago - 2 comments
Labels: documentation

#482 - Fix common_filter.py little typo

Pull Request - State: closed - Opened by acomrie over 1 year ago

#480 - Ripple tables should be moved from common and put into their own package.

Issue - State: open - Opened by edeno over 1 year ago - 1 comment
Labels: enhancement

#479 - Spikesorting pipeline needs to be migrated to new versioning system

Issue - State: closed - Opened by edeno over 1 year ago
Labels: enhancement, spike sorting

#478 - Change LFP imports to new LFP pipeline

Pull Request - State: closed - Opened by edeno over 1 year ago - 1 comment

#477 - migrate ripple tables to new LFP pipeline

Issue - State: closed - Opened by MichaelCoulter over 1 year ago
Labels: enhancement

#476 - LFP merge table missing

Issue - State: open - Opened by edeno over 1 year ago - 3 comments
Labels: bug, LFP

#475 - Save LFP as `pynwb.ecephys.LFP`

Pull Request - State: closed - Opened by khl02007 over 1 year ago - 9 comments

#474 - Saving LFP to NWB

Issue - State: closed - Opened by khl02007 over 1 year ago - 3 comments

#473 - LFP artifact detect

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago - 3 comments
Labels: enhancement

#472 - Fix artifact removed valid times

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#471 - Add codespell - config, workflow, fixed some typos and unified/removed a few imports

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 2 comments

#470 - Create a test nwb file and use it for all tutorials

Issue - State: closed - Opened by lfrank over 1 year ago - 15 comments
Labels: enhancement

#469 - merge tables make delete difficult

Issue - State: open - Opened by lfrank over 1 year ago - 6 comments
Labels: enhancement

#468 - Lfp_v1_lf

Pull Request - State: closed - Opened by lfrank over 1 year ago - 1 comment
Labels: enhancement

#467 - readme-install-link

Pull Request - State: closed - Opened by zoldello over 1 year ago

#466 - Installation instructions are confusing

Issue - State: closed - Opened by lfrank over 1 year ago - 1 comment
Labels: documentation

#465 - Handle whiten

Pull Request - State: open - Opened by jguides over 1 year ago
Labels: bug, spike sorting

#464 - Add documentation emphasis on config script

Issue - State: closed - Opened by edeno over 1 year ago - 4 comments
Labels: documentation, enhancement

#463 - Add guest users

Pull Request - State: closed - Opened by lfrank over 1 year ago

#462 - Temporarily pin numpy < 1.24 to fix numba issues

Pull Request - State: closed - Opened by edeno over 1 year ago

#461 - Code test fails because mysql server shuts down.

Issue - State: closed - Opened by lfrank over 1 year ago

#460 - Kachery_sharing2

Pull Request - State: closed - Opened by lfrank over 1 year ago

#459 - Move whiten

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#458 - Kachery_sharing

Pull Request - State: closed - Opened by lfrank over 1 year ago - 1 comment

#457 - Add plot to plot all DIO events in a session

Pull Request - State: closed - Opened by edeno over 1 year ago

#456 - [WIP] Add LFP pipeline v1

Pull Request - State: closed - Opened by khl02007 over 1 year ago - 4 comments
Labels: enhancement

#455 - spike interface error with clusterless thresholder

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 3 comments

#454 - Remove whiten parameter

Pull Request - State: closed - Opened by edeno over 1 year ago

#453 - Long primary keys cause problems with mysql newer version

Issue - State: closed - Opened by lfrank over 1 year ago - 2 comments
Labels: bug

#452 - keyword problem for clusterless thresholder and spike sorting

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#451 - Change whiten to float16 for metric computation

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#450 - bug during metrics calculation

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 4 comments

#449 - Add whitening prior to sorting

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#447 - update default metric params

Pull Request - State: closed - Opened by jguides over 1 year ago

#446 - add integer scale for whitening recording

Pull Request - State: closed - Opened by jguides over 1 year ago

#445 - Error when populating Waveforms table following recent spyglass upgrade

Issue - State: closed - Opened by jguides over 1 year ago - 8 comments

#444 - In the LFP tutorial, the sample file was deleted

Issue - State: closed - Opened by zoldello over 1 year ago - 4 comments
Labels: bug, LFP

#443 - Default MetricParameters not up to date with current spikeinterface

Issue - State: closed - Opened by jguides over 1 year ago - 4 comments

#439 - Add table containing version string of latest release of spyglass

Issue - State: open - Opened by rly over 1 year ago - 7 comments
Labels: enhancement, common

#438 - Handle Intan capitalization specially

Pull Request - State: closed - Opened by rly over 1 year ago

#437 - Fix bug with spike sorting and probe

Pull Request - State: closed - Opened by rly over 1 year ago

#434 - cannot import name 'ExperimenterList' from 'spyglass.common.common_session'

Issue - State: closed - Opened by shijiegu over 1 year ago - 1 comment

#427 - Create changelog

Issue - State: closed - Opened by rly over 1 year ago

#422 - Update version to 0.3.1

Pull Request - State: closed - Opened by rly over 1 year ago

#421 - Fix import error due to deprecated `sv.Workspace`

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#420 - Refactor common for non Frank Lab data, allow file-based mods

Pull Request - State: closed - Opened by rly over 1 year ago - 1 comment

#419 - nwbfile insertion fails

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 5 comments
Labels: bug

#417 - Remove deprecated fxns to be used w/ sortingview 0.11.15

Issue - State: closed - Opened by acomrie over 1 year ago - 1 comment

#416 - disable-test_insert_session

Pull Request - State: closed - Opened by zoldello over 1 year ago

#415 - Modify Position Directory Structure

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 1 comment
Labels: question, position

#413 - Create more robust position video pipeline

Issue - State: open - Opened by dpeg22 over 1 year ago
Labels: enhancement, position

#411 - Fix broke test

Issue - State: closed - Opened by zoldello over 1 year ago

#409 - limit-python-to-3.9-in-pyproject_toml

Pull Request - State: closed - Opened by zoldello over 1 year ago - 3 comments

#405 - Add instantaneous phase and power of filtered signal

Issue - State: open - Opened by edeno over 1 year ago
Labels: enhancement

#404 - add tool to check for dead channels

Issue - State: open - Opened by MichaelCoulter over 1 year ago - 1 comment
Labels: enhancement

#401 - Still getting the sort_interval shape error

Issue - State: closed - Opened by xlsun79 over 1 year ago - 1 comment

#398 - Consolidate aux signals

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#397 - Move LFP tables from `common_ephys` to its own module

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#396 - Allow import of NWB file with multiple acquisition "Raw" data objects

Issue - State: open - Opened by rly over 1 year ago - 1 comment
Labels: enhancement, common

#390 - [FYI] Comments on spyglass setup as a rotation student

Issue - State: closed - Opened by donghoon-shin over 1 year ago - 2 comments

#377 - directories need to be created prior to running tutorial notebooks

Issue - State: closed - Opened by magland almost 2 years ago - 4 comments
Labels: bug

#372 - [WIP] Standardize schema names, add ImportedSS, revamp SortGroup

Pull Request - State: closed - Opened by rly almost 2 years ago - 1 comment

#367 - Update position pipeline

Pull Request - State: closed - Opened by dpeg22 almost 2 years ago - 6 comments
Labels: enhancement, position

#365 - Paths in dj.config for analysis and raw can differ from Spyglass env vars

Issue - State: closed - Opened by dpeg22 almost 2 years ago - 1 comment
Labels: bug

#361 - sync deletion between SortInterval and IntervalList

Issue - State: closed - Opened by MichaelCoulter almost 2 years ago - 2 comments
Labels: enhancement

#356 - cannot save list to analysis nwb file, and challenge with storing nested data

Issue - State: closed - Opened by jguides about 2 years ago - 1 comment

#345 - missing connection between automatic curation table and curation table

Issue - State: closed - Opened by MichaelCoulter about 2 years ago - 13 comments
Labels: bug, spike sorting

#342 - Install documentation uses kachery-client instead of kachery-cloud

Issue - State: closed - Opened by rsnevers about 2 years ago - 6 comments
Labels: documentation

#340 - installation error

Issue - State: closed - Opened by djarecka about 2 years ago - 7 comments

#339 - Add plots for sanity checking

Issue - State: closed - Opened by edeno about 2 years ago - 1 comment
Labels: enhancement

#338 - Document interval types

Issue - State: closed - Opened by edeno about 2 years ago
Labels: documentation, common

#334 - [WIP] Support config file-based modification of imported NWB data

Pull Request - State: closed - Opened by rly about 2 years ago - 6 comments

#332 - Let others write to analysis dir

Pull Request - State: closed - Opened by khl02007 about 2 years ago - 12 comments

#324 - [WIP] Add cosine symmetry and correlogram asymmetry as Metrics

Pull Request - State: closed - Opened by dpeg22 about 2 years ago - 4 comments
Labels: enhancement, spike sorting

#310 - cleaned up and force h5py 2.10

Pull Request - State: closed - Opened by lfrank about 2 years ago - 3 comments

#308 - wrong B-tree signature error when writing spikesorting recording

Issue - State: closed - Opened by jguides about 2 years ago - 4 comments
Labels: spike sorting

#304 - LabMemberInfo should not ask for full_name

Issue - State: closed - Opened by zoldello about 2 years ago - 2 comments
Labels: bug, common

#297 - Include set_snippet_len in workspace generation

Issue - State: open - Opened by emilymonroe95 about 2 years ago
Labels: enhancement, spike sorting

#288 - Metric to detect upward going action potentials

Issue - State: open - Opened by emilymonroe95 about 2 years ago
Labels: enhancement, spike sorting

#287 - Suspicious snr

Issue - State: closed - Opened by emilymonroe95 about 2 years ago - 1 comment
Labels: spike sorting

#286 - Potential Metric- Standard Deviation : Mean ratio

Issue - State: open - Opened by emilymonroe95 about 2 years ago
Labels: enhancement, spike sorting

#285 - UnitInclusion Table

Issue - State: closed - Opened by emilymonroe95 about 2 years ago - 1 comment
Labels: spike sorting

#273 - remove dependence of `ArtifactRemovedIntervalList` on `ArtifactDetectionSelection`

Issue - State: closed - Opened by khl02007 over 2 years ago - 12 comments
Labels: spike sorting

#248 - Keep track of some shared database modifications?

Issue - State: closed - Opened by acomrie over 2 years ago - 3 comments
Labels: documentation

#246 - documentation for broken dependency for artifact detection

Issue - State: open - Opened by MichaelCoulter over 2 years ago - 1 comment
Labels: documentation, spike sorting

#231 - check that sort_interval is only 1 segment

Issue - State: closed - Opened by MichaelCoulter over 2 years ago - 1 comment
Labels: spike sorting

#229 - Provide documentation to user on available arguments for parameter dictionaries.

Issue - State: open - Opened by dpeg22 over 2 years ago - 1 comment
Labels: documentation, enhancement

#226 - warn about deleting other peoples' tables

Issue - State: closed - Opened by MichaelCoulter over 2 years ago - 10 comments
Labels: enhancement

#225 - Change SortGroup functions to not delete existing entries

Issue - State: closed - Opened by dpeg22 over 2 years ago
Labels: spike sorting

#224 - Add ripple detection

Issue - State: closed - Opened by edeno over 2 years ago
Labels: enhancement

#221 - Easily matching brain regions to sort groups

Issue - State: closed - Opened by edeno over 2 years ago - 6 comments
Labels: enhancement

#220 - Standardization of brain region names

Issue - State: closed - Opened by edeno over 2 years ago