Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#566 - error when trying to run spikesorting for clusterless spikes

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 2 comments
Labels: bug

#565 - Improved Merge Table documentation

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#564 - Merge class: `get_part`, `fetch`

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#563 - Remove skan and polygon selector

Pull Request - State: closed - Opened by edeno over 1 year ago

#562 - Kachery_updates

Pull Request - State: closed - Opened by lfrank over 1 year ago - 1 comment

#561 - Document sharing with kachery

Issue - State: closed - Opened by edeno over 1 year ago - 2 comments
Labels: documentation

#558 - Mkdocs console block line breaks

Issue - State: closed - Opened by CBroz1 over 1 year ago
Labels: documentation

#557 - Allow for multiple camera recordings within single epoch

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 4 comments
Labels: enhancement

#556 - Merge table class

Pull Request - State: closed - Opened by CBroz1 over 1 year ago - 2 comments

#554 - device name: ‘dataacq_device0’ isn’t unique

Issue - State: closed - Opened by JoshiAbhilasha over 1 year ago - 5 comments
Labels: bug, common

#546 - Match up pos and epoch interval names based on overlapping valid times

Issue - State: closed - Opened by acomrie over 1 year ago - 1 comment
Labels: enhancement

#545 - Mixin for merge table

Issue - State: closed - Opened by edeno over 1 year ago - 8 comments
Labels: enhancement

#542 - Add instructions on how to build documentation

Issue - State: closed - Opened by zoldello over 1 year ago

#541 - Images not generated by code are not showing up in documentation notebooks.

Issue - State: closed - Opened by zoldello over 1 year ago - 7 comments
Labels: bug, documentation

#538 - Add position linearization

Pull Request - State: closed - Opened by edeno over 1 year ago - 1 comment
Labels: position

#537 - SPY-536-tweaks-to-mkdocs-doc

Pull Request - State: closed - Opened by zoldello over 1 year ago - 1 comment
Labels: documentation

#535 - Add method to utils for deleting from merge tables

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 2 comments
Labels: enhancement

#533 - Move all env variables to `dj.config`

Issue - State: closed - Opened by CBroz1 over 1 year ago - 1 comment

#532 - Add PR template

Issue - State: closed - Opened by CBroz1 over 1 year ago - 1 comment

#531 - Establish norms for branch/fork behavior

Issue - State: closed - Opened by CBroz1 over 1 year ago - 5 comments

#530 - `fetch_nwb` mixin class

Issue - State: closed - Opened by CBroz1 over 1 year ago
Labels: enhancement

#529 - A more pythonic user interface

Issue - State: open - Opened by khl02007 over 1 year ago - 4 comments
Labels: enhancement

#528 - Spike sorting recordings across multiple days together

Issue - State: open - Opened by khl02007 over 1 year ago - 1 comment
Labels: enhancement, spike sorting

#526 - SpikeInterface does not have n_shifts in the thresh spike detector function

Issue - State: closed - Opened by shijiegu over 1 year ago - 1 comment

#525 - Add secondary key in Interval List that describes the type of interval

Issue - State: closed - Opened by edeno over 1 year ago
Labels: common

#524 - [WIP] Add versioning to Spike Sorting Pipeline

Pull Request - State: closed - Opened by edeno over 1 year ago - 1 comment
Labels: spike sorting

#523 - Add versioning to Ripple pipeline and restructure LFPBand directories

Pull Request - State: closed - Opened by edeno over 1 year ago - 9 comments
Labels: LFP, ripple

#517 - Adding draft analytic_signal code to lfp schema

Pull Request - State: open - Opened by xlsun79 over 1 year ago - 3 comments

#516 - For adding anlytic_signal analyses as methods under LFPBand

Pull Request - State: closed - Opened by xlsun79 over 1 year ago - 2 comments

#514 - Error of populating quality metrics (I get nn_isolation with two entries, not one)

Issue - State: closed - Opened by yangsunhwang over 1 year ago - 5 comments
Labels: bug, spike sorting

#513 - Update version and changelog for 0.4.0 release

Pull Request - State: closed - Opened by rly over 1 year ago - 1 comment

#512 - Rename FirFilter to FirFilterParameters

Pull Request - State: closed - Opened by rly over 1 year ago - 2 comments

#511 - Fix lfp artifact detection

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago - 2 comments

#509 - Create new ripple pipeline that depends on new position pipeline and lfp pipeline

Issue - State: closed - Opened by edeno over 1 year ago
Labels: enhancement, ripple

#508 - Move Linearization to new Position Pipeline (or create separate pipeline)

Issue - State: closed - Opened by edeno over 1 year ago
Labels: position

#506 - DLC Usability tracker

Issue - State: closed - Opened by dpeg22 over 1 year ago - 1 comment
Labels: documentation, enhancement, position

#505 - Add DLC schema images for Tutorial notebooks

Pull Request - State: closed - Opened by dpeg22 over 1 year ago
Labels: position

#504 - LFPBand and LFP bug fixes

Pull Request - State: closed - Opened by acomrie over 1 year ago - 1 comment

#503 - [WIP] Split nwb spatial series objects into multiple pynwb objects to comply with best practices

Pull Request - State: open - Opened by dpeg22 over 1 year ago - 1 comment
Labels: bug, position

#502 - Make fixes to spyglass-position env creation and catch centroid cases

Pull Request - State: closed - Opened by dpeg22 over 1 year ago
Labels: bug, position

#501 - position schema to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#500 - lfp schema to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#499 - spikesorting schema to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago

#498 - spyglass intro / nwb file to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago

#497 - Handle the absence of video_frame_ind in the position pipeline

Issue - State: open - Opened by dpeg22 over 1 year ago
Labels: position

#496 - Analytic signal analyses for lfp band

Pull Request - State: closed - Opened by xlsun79 over 1 year ago - 3 comments
Labels: enhancement, LFP

#495 - type error with ripple detection

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 2 comments

#494 - Cannot import schema created under my account unless adding my username to it

Issue - State: closed - Opened by xlsun79 over 1 year ago - 3 comments

#493 - analysis nwb files can only be written for individual nwb files

Issue - State: closed - Opened by jguides over 1 year ago - 2 comments

#492 - problem with regular artifact detection

Issue - State: open - Opened by MichaelCoulter over 1 year ago - 3 comments

#491 - Remove environment_test.yml

Pull Request - State: closed - Opened by dpeg22 over 1 year ago

#490 - Update position notebooks for new pipeline

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 9 comments
Labels: position

#489 - [WIP] Fix pos ntbks

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 1 comment

#488 - LFP v1 suggestions

Issue - State: open - Opened by acomrie over 1 year ago - 5 comments
Labels: LFP

#487 - Move LFP merge table to outside v1

Pull Request - State: open - Opened by edeno over 1 year ago - 4 comments
Labels: LFP

#486 - Fix `spikeinterface` get sorter params function

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#485 - LFPBand() - specify query to fetch1

Issue - State: open - Opened by acomrie over 1 year ago - 2 comments
Labels: LFP

#484 - Update lfp.py for usability

Pull Request - State: closed - Opened by acomrie over 1 year ago

#483 - Need to document (in the docstrings) that the old pipelines are legacy pipelines.

Issue - State: closed - Opened by edeno over 1 year ago - 2 comments
Labels: documentation

#482 - Fix common_filter.py little typo

Pull Request - State: closed - Opened by acomrie over 1 year ago

#480 - Ripple tables should be moved from common and put into their own package.

Issue - State: open - Opened by edeno over 1 year ago - 1 comment
Labels: enhancement

#479 - Spikesorting pipeline needs to be migrated to new versioning system

Issue - State: closed - Opened by edeno over 1 year ago
Labels: enhancement, spike sorting

#478 - Change LFP imports to new LFP pipeline

Pull Request - State: closed - Opened by edeno over 1 year ago - 1 comment

#477 - migrate ripple tables to new LFP pipeline

Issue - State: closed - Opened by MichaelCoulter over 1 year ago
Labels: enhancement

#476 - LFP merge table missing

Issue - State: open - Opened by edeno over 1 year ago - 3 comments
Labels: bug, LFP

#475 - Save LFP as `pynwb.ecephys.LFP`

Pull Request - State: closed - Opened by khl02007 over 1 year ago - 9 comments

#474 - Saving LFP to NWB

Issue - State: closed - Opened by khl02007 over 1 year ago - 3 comments

#473 - LFP artifact detect

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago - 3 comments
Labels: enhancement

#472 - Fix artifact removed valid times

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#471 - Add codespell - config, workflow, fixed some typos and unified/removed a few imports

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 2 comments

#470 - Create a test nwb file and use it for all tutorials

Issue - State: closed - Opened by lfrank over 1 year ago - 15 comments
Labels: enhancement

#469 - merge tables make delete difficult

Issue - State: open - Opened by lfrank over 1 year ago - 6 comments
Labels: enhancement

#468 - Lfp_v1_lf

Pull Request - State: closed - Opened by lfrank over 1 year ago - 1 comment
Labels: enhancement

#467 - readme-install-link

Pull Request - State: closed - Opened by zoldello over 1 year ago

#466 - Installation instructions are confusing

Issue - State: closed - Opened by lfrank over 1 year ago - 1 comment
Labels: documentation

#465 - Handle whiten

Pull Request - State: open - Opened by jguides over 1 year ago
Labels: bug, spike sorting

#464 - Add documentation emphasis on config script

Issue - State: closed - Opened by edeno over 1 year ago - 4 comments
Labels: documentation, enhancement

#463 - Add guest users

Pull Request - State: closed - Opened by lfrank over 1 year ago

#462 - Temporarily pin numpy < 1.24 to fix numba issues

Pull Request - State: closed - Opened by edeno over 1 year ago

#461 - Code test fails because mysql server shuts down.

Issue - State: closed - Opened by lfrank over 1 year ago

#460 - Kachery_sharing2

Pull Request - State: closed - Opened by lfrank over 1 year ago

#459 - Move whiten

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#458 - Kachery_sharing

Pull Request - State: closed - Opened by lfrank over 1 year ago - 1 comment

#457 - Add plot to plot all DIO events in a session

Pull Request - State: closed - Opened by edeno over 1 year ago

#456 - [WIP] Add LFP pipeline v1

Pull Request - State: closed - Opened by khl02007 over 1 year ago - 4 comments
Labels: enhancement

#455 - spike interface error with clusterless thresholder

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 3 comments

#454 - Remove whiten parameter

Pull Request - State: closed - Opened by edeno over 1 year ago

#453 - Long primary keys cause problems with mysql newer version

Issue - State: closed - Opened by lfrank over 1 year ago - 2 comments
Labels: bug

#452 - keyword problem for clusterless thresholder and spike sorting

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#451 - Change whiten to float16 for metric computation

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#450 - bug during metrics calculation

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 4 comments

#449 - Add whitening prior to sorting

Pull Request - State: closed - Opened by khl02007 over 1 year ago

#447 - update default metric params

Pull Request - State: closed - Opened by jguides over 1 year ago

#446 - add integer scale for whitening recording

Pull Request - State: closed - Opened by jguides over 1 year ago

#445 - Error when populating Waveforms table following recent spyglass upgrade

Issue - State: closed - Opened by jguides over 1 year ago - 8 comments