Ecosyste.ms: Issues

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GitHub / LorenFrankLab/spyglass issues and pull requests

#670 - Prevent Curation from re-adding an existing sorting key with a new cu…

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago - 5 comments

#669 - Electrode value mapping assumes `ndx_franklab_novela.Probe`

Issue - State: open - Opened by CBroz1 about 1 year ago
Labels: enhancement, common

#667 - allow for multiple cameras in video_list for DLC position notebooks 5 and 6

Issue - State: closed - Opened by emreybroyles about 1 year ago - 4 comments
Labels: enhancement, position

#665 - Fix gitignore - Add merge notebook

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#664 - Key length solve: Reduce varchars

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#662 - Generate utils from `config/` scripts

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#661 - Fix Minor bugs in TrodesV1 pipeline

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#660 - Fix config

Pull Request - State: closed - Opened by edeno about 1 year ago

#659 - Minor bugs in lfp filtering

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#658 - call on module error in dj_config.py

Issue - State: closed - Opened by andre-metzger about 1 year ago

#657 - Spikesorting artifact interval debug

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#656 - Insert session debug

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago - 1 comment

#655 - Contrib docs edits

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#654 - Minor fixes - docs build, refactor common

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#653 - Increase tolerance for interval allignment

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago - 1 comment

#652 - Add a new attribute called `electrical_series_name` to the primary key of `Raw`

Issue - State: open - Opened by khl02007 about 1 year ago - 4 comments
Labels: enhancement, common

#651 - Spike sorting v1 pipeline

Pull Request - State: closed - Opened by khl02007 about 1 year ago - 18 comments
Labels: spike sorting

#650 - Fix config for mysql 8

Pull Request - State: closed - Opened by edeno about 1 year ago

#649 - No ripple merge table

Issue - State: closed - Opened by edeno about 1 year ago - 1 comment

#648 - Add documentation and tutorial for config-based insertion method

Issue - State: closed - Opened by khl02007 about 1 year ago
Labels: documentation

#647 - Add tutorial for parallel spikesorting pipeline

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago - 1 comment

#646 - Fix key error

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#644 - Broken Dropbox link of an example NWB data

Issue - State: closed - Opened by chenhongbiao about 1 year ago - 4 comments

#643 - Spikesort populator efficiency improvements

Pull Request - State: closed - Opened by CBroz1 about 1 year ago

#642 - Support explicit 2d track definition.

Pull Request - State: closed - Opened by jsoules about 1 year ago - 2 comments

#641 - Change in default character encoding in Mysql 8 causes problems

Issue - State: closed - Opened by lfrank about 1 year ago - 2 comments

#640 - Avoid for loop and use searchsorted

Pull Request - State: closed - Opened by edeno about 1 year ago

#639 - dj.set_password does not work in Frank Lab production database (MySQL 8)

Issue - State: closed - Opened by rly about 1 year ago - 5 comments

#638 - Low verbosity error `1217` on delete prevents cascade

Issue - State: open - Opened by samuelbray32 about 1 year ago - 31 comments
Labels: Database

#637 - Spiksorting pipeline populator

Pull Request - State: closed - Opened by samuelbray32 over 1 year ago - 5 comments

#636 - Handle case where there is only one artifact interval

Pull Request - State: closed - Opened by edeno over 1 year ago

#634 - Simplify spike sorting steps

Issue - State: closed - Opened by edeno over 1 year ago

#633 - Standards for key names

Issue - State: open - Opened by edeno over 1 year ago - 1 comment
Labels: documentation, enhancement

#631 - Remove common backup

Pull Request - State: open - Opened by edeno over 1 year ago - 1 comment

#630 - Keys too large for MySQL defaults

Issue - State: open - Opened by CBroz1 over 1 year ago - 7 comments
Labels: Database

#629 - LFP artifact optimizations

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#628 - #613 - RawPosition handle multiple pynwb position objects

Pull Request - State: closed - Opened by CBroz1 over 1 year ago - 2 comments

#627 - Fix interval map dj error

Pull Request - State: closed - Opened by samuelbray32 over 1 year ago

#626 - PositionIntervalMap population fails when called within populate transaction

Issue - State: closed - Opened by dpeg22 over 1 year ago - 7 comments
Labels: bug, position

#625 - New parcel has no points during spike sorting clustering

Issue - State: closed - Opened by xlsun79 over 1 year ago - 4 comments

#624 - No space on `/tmp/{random string}`

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 6 comments

#623 - integrity error when trying to delete from IntervalList

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#622 - easier to understand error messages from datajoint

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#621 - fix position interval issue in ripple detection

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago

#619 - Update environment_position.yml

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment
Labels: position

#618 - Refactor `common`

Pull Request - State: closed - Opened by CBroz1 over 1 year ago - 2 comments

#617 - Merge delete parent fix

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#616 - More notebook revisions

Pull Request - State: closed - Opened by CBroz1 over 1 year ago - 2 comments

#615 - Lfp artifact ref

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#614 - error when using merge_delete_parent

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 6 comments

#613 - RawPosition cannot handle multiple pynwb position objects

Issue - State: closed - Opened by dpeg22 over 1 year ago - 1 comment
Labels: position

#612 - Partial session insert fail state

Issue - State: closed - Opened by CBroz1 over 1 year ago - 6 comments
Labels: enhancement, good first issue

#611 - Install spikeinterface from pypi in environment.yml

Pull Request - State: closed - Opened by edeno over 1 year ago - 6 comments

#610 - permission error when inserting into ripple selection table

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 2 comments

#609 - Merge table multi-source error specificity

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 3 comments

#608 - Update 03_lfp notebook to reflect LFP changes

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 1 comment
Labels: LFP

#607 - Update analytic signal notebook

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 1 comment
Labels: LFP

#606 - Lfp_analysis_move

Pull Request - State: closed - Opened by lfrank over 1 year ago
Labels: LFP

#605 - fix reference bug in lfp_band.py

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#603 - electrode id sorting problem in LFPband

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 6 comments

#602 - error during spikesortingrecording populate

Issue - State: closed - Opened by denissemorales over 1 year ago - 5 comments

#601 - Restructure LFP and Ripple directories

Pull Request - State: closed - Opened by dpeg22 over 1 year ago
Labels: LFP, ripple, merge

#600 - Add notebook demonstrating some approaches to alter tables manually

Pull Request - State: closed - Opened by rly over 1 year ago - 1 comment

#599 - Remove nb_conda from conda environment files to fix installation error

Pull Request - State: closed - Opened by rly over 1 year ago

#598 - nn_isolation metric fix

Pull Request - State: closed - Opened by lfrank over 1 year ago - 2 comments

#597 - fixed nn_isolation to return one number

Pull Request - State: closed - Opened by denissemorales over 1 year ago

#596 - Pull request test failing

Issue - State: closed - Opened by dpeg22 over 1 year ago - 1 comment

#595 - Modify PositionOutput.fetch1_dataframe to use upstream methods

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 3 comments
Labels: bug, position, merge

#594 - Move LFPElectrodeGroup to lfp_electrode.py

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 4 comments
Labels: bug

#593 - Path handling and notebook revisions

Pull Request - State: closed - Opened by CBroz1 over 1 year ago - 1 comment

#592 - NWB folder writing permission for a team

Issue - State: closed - Opened by xlsun79 over 1 year ago - 9 comments
Labels: enhancement

#591 - Merge class appears to break `dj.ERD` function

Issue - State: closed - Opened by rly over 1 year ago - 6 comments
Labels: bug

#590 - reference LFP and then do artifact detection

Issue - State: open - Opened by MichaelCoulter over 1 year ago - 2 comments
Labels: LFP

#589 - 02_curation tutorial is broken

Issue - State: closed - Opened by JoshiAbhilasha over 1 year ago - 3 comments

#588 - update LFPBandV1 fetch1_dataframe

Pull Request - State: closed - Opened by dpeg22 over 1 year ago
Labels: bug

#586 - Allow table entries to be associated with LabTeam of choice

Issue - State: closed - Opened by dpeg22 over 1 year ago - 1 comment
Labels: enhancement

#585 - Convert Merge Table doc Example section into notebook

Issue - State: closed - Opened by CBroz1 over 1 year ago
Labels: documentation

#583 - Bump python version required

Pull Request - State: closed - Opened by edeno over 1 year ago - 1 comment

#582 - artifact detection across tetrodes for spike sorting

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 6 comments
Labels: spike sorting

#581 - Check pypi install before paper release

Issue - State: closed - Opened by edeno over 1 year ago - 1 comment
Labels: infrastructure

#580 - Prune environment dependencies.

Issue - State: closed - Opened by edeno over 1 year ago - 1 comment
Labels: infrastructure

#579 - Document using mamba over conda

Issue - State: closed - Opened by edeno over 1 year ago

#578 - Add pypi api token

Issue - State: closed - Opened by edeno over 1 year ago - 1 comment

#575 - Create online hub for tutorials

Issue - State: closed - Opened by edeno over 1 year ago - 2 comments
Labels: enhancement, infrastructure

#574 - Create a medium sized NWB file for spike sorting and position tutorials

Issue - State: closed - Opened by edeno over 1 year ago - 1 comment

#573 - Update initial tutorials to use small NWB file

Issue - State: closed - Opened by edeno over 1 year ago - 1 comment

#572 - Add support to Position Pipeline for >1 camera position tracking

Issue - State: open - Opened by dpeg22 over 1 year ago - 1 comment
Labels: enhancement, position

#571 - Fix types

Issue - State: closed - Opened by edeno over 1 year ago - 2 comments

#570 - Figurl visualization for video, dio, ephys traces.

Issue - State: closed - Opened by edeno over 1 year ago

#569 - Update Position pipeline merge structure

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 3 comments
Labels: position

#568 - a few typos in lfp_artifact.py

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago

#567 - remove extra parameter for clusterless thresholder

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago