Ecosyste.ms: Issues

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GitHub / LorenFrankLab/spyglass issues and pull requests

#608 - Update 03_lfp notebook to reflect LFP changes

Pull Request - State: closed - Opened by dpeg22 about 1 year ago - 1 comment
Labels: LFP

#607 - Update analytic signal notebook

Pull Request - State: closed - Opened by dpeg22 about 1 year ago - 1 comment
Labels: LFP

#606 - Lfp_analysis_move

Pull Request - State: closed - Opened by lfrank about 1 year ago
Labels: LFP

#605 - fix reference bug in lfp_band.py

Pull Request - State: closed - Opened by MichaelCoulter about 1 year ago - 1 comment

#603 - electrode id sorting problem in LFPband

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 6 comments

#602 - error during spikesortingrecording populate

Issue - State: closed - Opened by denissemorales about 1 year ago - 5 comments

#601 - Restructure LFP and Ripple directories

Pull Request - State: closed - Opened by dpeg22 about 1 year ago
Labels: LFP, ripple, merge

#600 - Add notebook demonstrating some approaches to alter tables manually

Pull Request - State: closed - Opened by rly about 1 year ago - 1 comment

#599 - Remove nb_conda from conda environment files to fix installation error

Pull Request - State: closed - Opened by rly about 1 year ago

#598 - nn_isolation metric fix

Pull Request - State: closed - Opened by lfrank about 1 year ago - 2 comments

#597 - fixed nn_isolation to return one number

Pull Request - State: closed - Opened by denissemorales about 1 year ago

#596 - Pull request test failing

Issue - State: closed - Opened by dpeg22 about 1 year ago - 1 comment

#595 - Modify PositionOutput.fetch1_dataframe to use upstream methods

Pull Request - State: closed - Opened by dpeg22 about 1 year ago - 3 comments
Labels: bug, position, merge

#594 - Move LFPElectrodeGroup to lfp_electrode.py

Pull Request - State: closed - Opened by dpeg22 about 1 year ago - 4 comments
Labels: bug

#593 - Path handling and notebook revisions

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#592 - NWB folder writing permission for a team

Issue - State: closed - Opened by xlsun79 about 1 year ago - 9 comments
Labels: enhancement

#591 - Merge class appears to break `dj.ERD` function

Issue - State: closed - Opened by rly about 1 year ago - 6 comments
Labels: bug

#590 - reference LFP and then do artifact detection

Issue - State: open - Opened by MichaelCoulter about 1 year ago - 2 comments
Labels: LFP

#589 - 02_curation tutorial is broken

Issue - State: closed - Opened by JoshiAbhilasha about 1 year ago - 3 comments

#588 - update LFPBandV1 fetch1_dataframe

Pull Request - State: closed - Opened by dpeg22 about 1 year ago
Labels: bug

#586 - Allow table entries to be associated with LabTeam of choice

Issue - State: closed - Opened by dpeg22 about 1 year ago - 1 comment
Labels: enhancement

#585 - Convert Merge Table doc Example section into notebook

Issue - State: closed - Opened by CBroz1 about 1 year ago
Labels: documentation

#583 - Bump python version required

Pull Request - State: closed - Opened by edeno about 1 year ago - 1 comment

#582 - artifact detection across tetrodes for spike sorting

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 6 comments
Labels: spike sorting

#581 - Check pypi install before paper release

Issue - State: closed - Opened by edeno about 1 year ago - 1 comment
Labels: infrastructure

#580 - Prune environment dependencies.

Issue - State: closed - Opened by edeno about 1 year ago - 1 comment
Labels: infrastructure

#579 - Document using mamba over conda

Issue - State: closed - Opened by edeno about 1 year ago

#578 - Add pypi api token

Issue - State: closed - Opened by edeno about 1 year ago - 1 comment

#575 - Create online hub for tutorials

Issue - State: closed - Opened by edeno about 1 year ago - 2 comments
Labels: enhancement, infrastructure

#574 - Create a medium sized NWB file for spike sorting and position tutorials

Issue - State: closed - Opened by edeno about 1 year ago - 1 comment

#573 - Update initial tutorials to use small NWB file

Issue - State: closed - Opened by edeno about 1 year ago - 1 comment

#572 - Add support to Position Pipeline for >1 camera position tracking

Issue - State: open - Opened by dpeg22 about 1 year ago - 1 comment
Labels: enhancement, position

#571 - Fix types

Issue - State: closed - Opened by edeno about 1 year ago - 2 comments

#570 - Figurl visualization for video, dio, ephys traces.

Issue - State: closed - Opened by edeno about 1 year ago

#569 - Update Position pipeline merge structure

Pull Request - State: closed - Opened by dpeg22 about 1 year ago - 3 comments
Labels: position

#568 - a few typos in lfp_artifact.py

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago

#567 - remove extra parameter for clusterless thresholder

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago

#566 - error when trying to run spikesorting for clusterless spikes

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 2 comments
Labels: bug

#565 - Improved Merge Table documentation

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#564 - Merge class: `get_part`, `fetch`

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#563 - Remove skan and polygon selector

Pull Request - State: closed - Opened by edeno over 1 year ago

#562 - Kachery_updates

Pull Request - State: closed - Opened by lfrank over 1 year ago - 1 comment

#561 - Document sharing with kachery

Issue - State: closed - Opened by edeno over 1 year ago - 2 comments
Labels: documentation

#558 - Mkdocs console block line breaks

Issue - State: closed - Opened by CBroz1 over 1 year ago
Labels: documentation

#557 - Allow for multiple camera recordings within single epoch

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 4 comments
Labels: enhancement

#556 - Merge table class

Pull Request - State: closed - Opened by CBroz1 over 1 year ago - 2 comments

#554 - device name: ‘dataacq_device0’ isn’t unique

Issue - State: closed - Opened by JoshiAbhilasha over 1 year ago - 5 comments
Labels: bug, common

#546 - Match up pos and epoch interval names based on overlapping valid times

Issue - State: closed - Opened by acomrie over 1 year ago - 1 comment
Labels: enhancement

#545 - Mixin for merge table

Issue - State: closed - Opened by edeno over 1 year ago - 8 comments
Labels: enhancement

#542 - Add instructions on how to build documentation

Issue - State: closed - Opened by zoldello over 1 year ago

#541 - Images not generated by code are not showing up in documentation notebooks.

Issue - State: closed - Opened by zoldello over 1 year ago - 7 comments
Labels: bug, documentation

#538 - Add position linearization

Pull Request - State: closed - Opened by edeno over 1 year ago - 1 comment
Labels: position

#537 - SPY-536-tweaks-to-mkdocs-doc

Pull Request - State: closed - Opened by zoldello over 1 year ago - 1 comment
Labels: documentation

#535 - Add method to utils for deleting from merge tables

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 2 comments
Labels: enhancement

#533 - Move all env variables to `dj.config`

Issue - State: closed - Opened by CBroz1 over 1 year ago - 1 comment

#532 - Add PR template

Issue - State: closed - Opened by CBroz1 over 1 year ago - 1 comment

#531 - Establish norms for branch/fork behavior

Issue - State: closed - Opened by CBroz1 over 1 year ago - 5 comments

#530 - `fetch_nwb` mixin class

Issue - State: closed - Opened by CBroz1 over 1 year ago
Labels: enhancement

#529 - A more pythonic user interface

Issue - State: open - Opened by khl02007 over 1 year ago - 4 comments
Labels: enhancement

#528 - Spike sorting recordings across multiple days together

Issue - State: open - Opened by khl02007 over 1 year ago - 1 comment
Labels: enhancement, spike sorting

#526 - SpikeInterface does not have n_shifts in the thresh spike detector function

Issue - State: closed - Opened by shijiegu over 1 year ago - 1 comment

#525 - Add secondary key in Interval List that describes the type of interval

Issue - State: closed - Opened by edeno over 1 year ago
Labels: common

#524 - [WIP] Add versioning to Spike Sorting Pipeline

Pull Request - State: closed - Opened by edeno over 1 year ago - 1 comment
Labels: spike sorting

#523 - Add versioning to Ripple pipeline and restructure LFPBand directories

Pull Request - State: closed - Opened by edeno over 1 year ago - 9 comments
Labels: LFP, ripple

#517 - Adding draft analytic_signal code to lfp schema

Pull Request - State: open - Opened by xlsun79 over 1 year ago - 3 comments

#516 - For adding anlytic_signal analyses as methods under LFPBand

Pull Request - State: closed - Opened by xlsun79 over 1 year ago - 2 comments

#514 - Error of populating quality metrics (I get nn_isolation with two entries, not one)

Issue - State: closed - Opened by yangsunhwang over 1 year ago - 5 comments
Labels: bug, spike sorting

#513 - Update version and changelog for 0.4.0 release

Pull Request - State: closed - Opened by rly over 1 year ago - 1 comment

#512 - Rename FirFilter to FirFilterParameters

Pull Request - State: closed - Opened by rly over 1 year ago - 2 comments

#511 - Fix lfp artifact detection

Pull Request - State: closed - Opened by MichaelCoulter over 1 year ago - 2 comments

#509 - Create new ripple pipeline that depends on new position pipeline and lfp pipeline

Issue - State: closed - Opened by edeno over 1 year ago
Labels: enhancement, ripple

#508 - Move Linearization to new Position Pipeline (or create separate pipeline)

Issue - State: closed - Opened by edeno over 1 year ago
Labels: position

#506 - DLC Usability tracker

Issue - State: closed - Opened by dpeg22 over 1 year ago - 1 comment
Labels: documentation, enhancement, position

#505 - Add DLC schema images for Tutorial notebooks

Pull Request - State: closed - Opened by dpeg22 over 1 year ago
Labels: position

#504 - LFPBand and LFP bug fixes

Pull Request - State: closed - Opened by acomrie over 1 year ago - 1 comment

#503 - [WIP] Split nwb spatial series objects into multiple pynwb objects to comply with best practices

Pull Request - State: open - Opened by dpeg22 over 1 year ago - 1 comment
Labels: bug, position

#502 - Make fixes to spyglass-position env creation and catch centroid cases

Pull Request - State: closed - Opened by dpeg22 over 1 year ago
Labels: bug, position

#501 - position schema to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#500 - lfp schema to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 1 comment

#499 - spikesorting schema to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago

#498 - spyglass intro / nwb file to do list

Issue - State: closed - Opened by MichaelCoulter over 1 year ago

#497 - Handle the absence of video_frame_ind in the position pipeline

Issue - State: open - Opened by dpeg22 over 1 year ago
Labels: position

#496 - Analytic signal analyses for lfp band

Pull Request - State: closed - Opened by xlsun79 over 1 year ago - 3 comments
Labels: enhancement, LFP

#495 - type error with ripple detection

Issue - State: closed - Opened by MichaelCoulter over 1 year ago - 2 comments

#494 - Cannot import schema created under my account unless adding my username to it

Issue - State: closed - Opened by xlsun79 over 1 year ago - 3 comments

#493 - analysis nwb files can only be written for individual nwb files

Issue - State: closed - Opened by jguides over 1 year ago - 2 comments

#492 - problem with regular artifact detection

Issue - State: open - Opened by MichaelCoulter over 1 year ago - 3 comments

#491 - Remove environment_test.yml

Pull Request - State: closed - Opened by dpeg22 over 1 year ago

#490 - Update position notebooks for new pipeline

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 9 comments
Labels: position

#489 - [WIP] Fix pos ntbks

Pull Request - State: closed - Opened by dpeg22 over 1 year ago - 1 comment

#488 - LFP v1 suggestions

Issue - State: open - Opened by acomrie over 1 year ago - 5 comments
Labels: LFP

#487 - Move LFP merge table to outside v1

Pull Request - State: open - Opened by edeno over 1 year ago - 4 comments
Labels: LFP

#486 - Fix `spikeinterface` get sorter params function

Pull Request - State: closed - Opened by khl02007 over 1 year ago