Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#771 - DLC Project Insert hangs

Issue - State: closed - Opened by rpswenson 11 months ago - 3 comments
Labels: bug, position

#770 - Add sampling rate to LFPV1 interval_list_name

Pull Request - State: closed - Opened by samuelbray32 11 months ago - 2 comments

#769 - Minor decoding fixes

Pull Request - State: closed - Opened by edeno 11 months ago - 1 comment

#768 - merge_insert uniqueness

Issue - State: closed - Opened by edeno 11 months ago - 1 comment
Labels: bug, merge

#767 - Comment out video section for mini-rec in Update 20_Position_Trodes.ipynb

Pull Request - State: closed - Opened by edeno 11 months ago - 1 comment

#766 - Handle numpy arrays in `create_lfp_electrode_group`

Pull Request - State: closed - Opened by edeno 11 months ago

#765 - Use PositionOutput to get data in example notebook

Pull Request - State: closed - Opened by samuelbray32 11 months ago - 1 comment

#764 - Update LFP notebook

Pull Request - State: closed - Opened by samuelbray32 11 months ago - 1 comment

#763 - Unavailable key in LFPV1.make()

Issue - State: closed - Opened by samuelbray32 11 months ago - 2 comments
Labels: bug, LFP

#762 - Print session/exp summary, fix lfp target sample fetch

Pull Request - State: closed - Opened by CBroz1 11 months ago

#761 - Fix SpikeSortingOutput get_recording and get_sorting

Pull Request - State: closed - Opened by edeno 11 months ago

#760 - Fix the length of `object_id` for `ImportedSpikeSorting`

Pull Request - State: closed - Opened by khl02007 11 months ago

#759 - `merge_restrict` failure case

Issue - State: closed - Opened by edeno 11 months ago - 2 comments
Labels: bug, merge

#757 - restrict get position info by session name

Pull Request - State: closed - Opened by samuelbray32 11 months ago

#756 - Restriction specificity in load_position_info

Issue - State: closed - Opened by samuelbray32 11 months ago
Labels: bug, decoding

#755 - Update docs to reflect new notebook structure

Issue - State: closed - Opened by edeno 11 months ago - 1 comment
Labels: bug, documentation

#754 - Deleting bodyparts from BodyPart table in DLC pipeline

Issue - State: closed - Opened by emreybroyles 11 months ago - 5 comments

#753 - Dlc debug: smoothing_duration fix

Pull Request - State: closed - Opened by emreybroyles 11 months ago

#752 - Unrecognized keyword in pandas

Issue - State: closed - Opened by samuelbray32 11 months ago - 1 comment
Labels: bug, position

#751 - Remove old `delete` method from `SpikeSorting` table of V0 pipeline

Pull Request - State: closed - Opened by khl02007 11 months ago

#750 - Move `figurl_views` to spike sorting v0

Pull Request - State: closed - Opened by khl02007 11 months ago

#749 - Centralize get_class logic in Merge

Pull Request - State: closed - Opened by CBroz1 11 months ago

#748 - Move `figurl_views` module into the spikesorting pipeline

Issue - State: closed - Opened by edeno 11 months ago

#747 - Remove logger.info() without message

Pull Request - State: closed - Opened by edeno 11 months ago

#746 - Fix PositionOutput.fetch1_dataframe bug

Pull Request - State: closed - Opened by samuelbray32 11 months ago

#745 - Error in PositionOutput.fetch1_dataframe

Issue - State: closed - Opened by samuelbray32 11 months ago
Labels: bug, position

#744 - Can't populate LFPV1 with different entries for the same nwb_file_name

Issue - State: closed - Opened by sharon-chiang 11 months ago - 10 comments
Labels: bug, LFP

#743 - Pytest revamp

Pull Request - State: closed - Opened by CBroz1 11 months ago

#742 - Interval list types

Pull Request - State: closed - Opened by samuelbray32 11 months ago - 2 comments

#741 - Check for upsampled data in trodes fetch dataframe

Pull Request - State: closed - Opened by samuelbray32 11 months ago
Labels: position

#740 - Fetch upsampled trodes position

Pull Request - State: closed - Opened by samuelbray32 11 months ago - 1 comment
Labels: position

#739 - Error in TrodesPosV1 fetch1_dataframe with upsampled data

Issue - State: closed - Opened by samuelbray32 11 months ago
Labels: bug, position

#738 - Spikesorting deletion prevention

Issue - State: closed - Opened by samuelbray32 11 months ago - 1 comment
Labels: bug

#737 - Class-specific implementation of _merge_restrict_parents

Issue - State: closed - Opened by samuelbray32 11 months ago - 1 comment
Labels: enhancement, merge

#736 - Update Trodes Position notebook to use PositionOutput

Issue - State: closed - Opened by edeno 11 months ago
Labels: bug, position

#735 - Add detail to sharing notebook

Pull Request - State: closed - Opened by samuelbray32 11 months ago - 2 comments

#734 - #732

Pull Request - State: closed - Opened by CBroz1 11 months ago

#733 - Circular import with KacheryZone

Issue - State: closed - Opened by samuelbray32 11 months ago - 2 comments
Labels: bug

#732 - Merge fetch_nwb errors

Issue - State: closed - Opened by edeno 11 months ago - 1 comment
Labels: bug

#731 - Decoding pipeline

Pull Request - State: closed - Opened by edeno 11 months ago - 6 comments

#730 - print -> logger

Pull Request - State: closed - Opened by CBroz1 11 months ago - 1 comment

#729 - Helper function for adding data to kachery

Pull Request - State: closed - Opened by samuelbray32 11 months ago
Labels: enhancement

#728 - Handle sortings in which no units are detected (SpikeSortingV1)

Pull Request - State: closed - Opened by khl02007 11 months ago

#727 - SpikeSortingOutput fetch_nwb returning more files

Issue - State: closed - Opened by edeno 11 months ago - 4 comments

#726 - Handle single intervals in spike sorting

Pull Request - State: closed - Opened by edeno 11 months ago

#725 - SpikeSorting fails if no units are detected

Issue - State: closed - Opened by edeno 11 months ago - 3 comments

#724 - Priority for fetch_nwb function in merge tables

Pull Request - State: closed - Opened by samuelbray32 11 months ago
Labels: bug, merge

#723 - Add `mkdir` to pass pytests

Pull Request - State: closed - Opened by CBroz1 11 months ago

#722 - Env variables for DLC

Pull Request - State: closed - Opened by CBroz1 11 months ago - 1 comment

#721 - Avoid bug in spikeinterface for low spikecounts

Pull Request - State: closed - Opened by samuelbray32 11 months ago
Labels: bug, spike sorting

#720 - Fix ref channel append error

Pull Request - State: closed - Opened by khl02007 11 months ago

#719 - Make `insert_sessions` more robust to failures to populate

Issue - State: closed - Opened by edeno 11 months ago - 4 comments
Labels: enhancement, common

#718 - Quality Metrics bug in spikeinterface

Issue - State: closed - Opened by samuelbray32 11 months ago

#717 - V0 migration model, revised

Pull Request - State: closed - Opened by CBroz1 11 months ago - 1 comment

#716 - VideoFile fails to insert in the tutorial using the minirec file

Issue - State: closed - Opened by edeno 12 months ago
Labels: documentation, position

#715 - Change method of defining base dir in get_abs_path

Pull Request - State: closed - Opened by samuelbray32 12 months ago

#714 - Hotfix for attrib error `__` -> `_nwb_table_dict`

Pull Request - State: closed - Opened by CBroz1 12 months ago

#713 - Figurl to visualize ripple detection as a way to diagnose problems

Issue - State: closed - Opened by edeno 12 months ago
Labels: enhancement, ripple

#712 - Error in fetch_nwb on remote client

Issue - State: closed - Opened by samuelbray32 12 months ago - 5 comments

#711 - Add cautious delete mixin

Pull Request - State: closed - Opened by CBroz1 12 months ago - 1 comment

#710 - Pytorch-CUDA version compatibility problem in spyglass-position environment

Issue - State: open - Opened by sytseng 12 months ago - 2 comments
Labels: bug, position

#709 - Edit notebook to reflect #705

Issue - State: closed - Opened by CBroz1 12 months ago - 2 comments
Labels: bug, LFP

#708 - add remove_existing_folder argument

Pull Request - State: closed - Opened by samuelbray32 12 months ago

#707 - Spikesorting temp directory

Issue - State: closed - Opened by samuelbray32 12 months ago - 3 comments
Labels: spike sorting

#706 - Lfp band fixes

Pull Request - State: closed - Opened by samuelbray32 12 months ago

#703 - Delete downstream restriction fix

Pull Request - State: closed - Opened by CBroz1 12 months ago

#702 - Dlc debug

Pull Request - State: closed - Opened by emreybroyles 12 months ago - 2 comments

#701 - dlc_utils.py and common_behav.py fixes

Issue - State: closed - Opened by emreybroyles 12 months ago - 1 comment

#700 - restrictions on delete_downstream_merge

Issue - State: closed - Opened by samuelbray32 12 months ago

#699 - Copy of spike and wave discharge detection analysis from spyglass_custom

Pull Request - State: closed - Opened by bsharma-hiprep 12 months ago - 4 comments
Labels: LFP

#698 - Add new videos to DLC project after project has been inserted into spyglass

Issue - State: open - Opened by emreybroyles 12 months ago - 6 comments
Labels: enhancement, position

#697 - added Path library to imports

Pull Request - State: closed - Opened by sharon-chiang 12 months ago

#696 - Changed SpyglassMixin to be imported from dj_mixin rather than dj_hel…

Pull Request - State: closed - Opened by sharon-chiang 12 months ago - 1 comment

#695 - Linearizationv1 debug and tutorial

Pull Request - State: closed - Opened by samuelbray32 12 months ago - 6 comments

#694 - V0 migration model using position linearization

Pull Request - State: closed - Opened by CBroz1 12 months ago - 1 comment

#693 - Mismatch in values for KACHERY_CLOUD_DIR

Issue - State: closed - Opened by samuelbray32 almost 1 year ago - 9 comments

#692 - Mixin class

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 2 comments

#691 - Make artifact interval a 2d array

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#690 - Limited scope docs PR

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#689 - Caught in loop when importing LinearizedPosition table

Issue - State: closed - Opened by samuelbray32 about 1 year ago - 7 comments

#688 - Implement pre-commit, refactor input validation

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 6 comments

#687 - positionVideo debug

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#685 - Overview of spyglass functionality on documentation page

Issue - State: closed - Opened by lfrank about 1 year ago - 1 comment
Labels: documentation, enhancement

#684 - Multicam DLC project support

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 5 comments
Labels: position

#683 - [WIP] Add tutorial on customizing insert

Pull Request - State: closed - Opened by rly about 1 year ago - 4 comments

#682 - Standardize subpackage organization

Issue - State: open - Opened by CBroz1 about 1 year ago - 2 comments
Labels: enhancement

#681 - Document database management tools

Issue - State: closed - Opened by CBroz1 about 1 year ago
Labels: documentation, infrastructure

#680 - Add error message for single-led with wrong parameters

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#679 - Better error message for single-led

Issue - State: closed - Opened by samuelbray32 about 1 year ago
Labels: enhancement

#678 - Use trusted publishing for releases

Pull Request - State: closed - Opened by edeno about 1 year ago

#677 - Error reading hdf5 files when running SpikeSortingRecording.populate()

Issue - State: closed - Opened by xlsun79 about 1 year ago - 14 comments
Labels: spike sorting

#676 - LFPBand population gives error in included timestamps

Issue - State: closed - Opened by sharon-chiang about 1 year ago - 5 comments

#675 - Add check for data type of electrode_list in create_lfp_electrode_group

Issue - State: closed - Opened by sharon-chiang about 1 year ago
Labels: enhancement, LFP

#674 - Add setup specificity

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 1 comment

#673 - IntervalPositionInfo column ordering on fetch1_dataframe

Pull Request - State: closed - Opened by CBroz1 about 1 year ago

#672 - AnalysisNWBFile.cleanup() problem

Issue - State: closed - Opened by lfrank about 1 year ago - 6 comments