Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#712 - Error in fetch_nwb on remote client

Issue - State: closed - Opened by samuelbray32 10 months ago - 5 comments

#711 - Add cautious delete mixin

Pull Request - State: closed - Opened by CBroz1 10 months ago - 1 comment

#710 - Pytorch-CUDA version compatibility problem in spyglass-position environment

Issue - State: open - Opened by sytseng 10 months ago - 2 comments
Labels: bug, position

#709 - Edit notebook to reflect #705

Issue - State: closed - Opened by CBroz1 10 months ago - 2 comments
Labels: bug, LFP

#708 - add remove_existing_folder argument

Pull Request - State: closed - Opened by samuelbray32 10 months ago

#707 - Spikesorting temp directory

Issue - State: closed - Opened by samuelbray32 10 months ago - 3 comments
Labels: spike sorting

#706 - Lfp band fixes

Pull Request - State: closed - Opened by samuelbray32 10 months ago

#703 - Delete downstream restriction fix

Pull Request - State: closed - Opened by CBroz1 10 months ago

#702 - Dlc debug

Pull Request - State: closed - Opened by emreybroyles 10 months ago - 2 comments

#701 - dlc_utils.py and common_behav.py fixes

Issue - State: closed - Opened by emreybroyles 10 months ago - 1 comment

#700 - restrictions on delete_downstream_merge

Issue - State: closed - Opened by samuelbray32 10 months ago

#699 - Copy of spike and wave discharge detection analysis from spyglass_custom

Pull Request - State: closed - Opened by bsharma-hiprep 10 months ago - 4 comments
Labels: LFP

#698 - Add new videos to DLC project after project has been inserted into spyglass

Issue - State: open - Opened by emreybroyles 10 months ago - 6 comments
Labels: enhancement, position

#697 - added Path library to imports

Pull Request - State: closed - Opened by sharon-chiang 10 months ago

#696 - Changed SpyglassMixin to be imported from dj_mixin rather than dj_hel…

Pull Request - State: closed - Opened by sharon-chiang 10 months ago - 1 comment

#695 - Linearizationv1 debug and tutorial

Pull Request - State: closed - Opened by samuelbray32 10 months ago - 6 comments

#694 - V0 migration model using position linearization

Pull Request - State: closed - Opened by CBroz1 10 months ago - 1 comment

#693 - Mismatch in values for KACHERY_CLOUD_DIR

Issue - State: closed - Opened by samuelbray32 10 months ago - 9 comments

#692 - Mixin class

Pull Request - State: closed - Opened by CBroz1 11 months ago - 2 comments

#691 - Make artifact interval a 2d array

Pull Request - State: closed - Opened by samuelbray32 11 months ago

#690 - Limited scope docs PR

Pull Request - State: closed - Opened by CBroz1 11 months ago - 1 comment

#689 - Caught in loop when importing LinearizedPosition table

Issue - State: closed - Opened by samuelbray32 11 months ago - 7 comments

#688 - Implement pre-commit, refactor input validation

Pull Request - State: closed - Opened by CBroz1 11 months ago - 6 comments

#687 - positionVideo debug

Pull Request - State: closed - Opened by samuelbray32 11 months ago

#685 - Overview of spyglass functionality on documentation page

Issue - State: closed - Opened by lfrank 11 months ago - 1 comment
Labels: documentation, enhancement

#684 - Multicam DLC project support

Pull Request - State: closed - Opened by CBroz1 11 months ago - 5 comments
Labels: position

#683 - [WIP] Add tutorial on customizing insert

Pull Request - State: closed - Opened by rly 11 months ago - 4 comments

#682 - Standardize subpackage organization

Issue - State: open - Opened by CBroz1 11 months ago - 2 comments
Labels: enhancement

#681 - Document database management tools

Issue - State: closed - Opened by CBroz1 11 months ago
Labels: documentation, infrastructure

#680 - Add error message for single-led with wrong parameters

Pull Request - State: closed - Opened by samuelbray32 11 months ago

#679 - Better error message for single-led

Issue - State: closed - Opened by samuelbray32 11 months ago
Labels: enhancement

#678 - Use trusted publishing for releases

Pull Request - State: closed - Opened by edeno 11 months ago

#677 - Error reading hdf5 files when running SpikeSortingRecording.populate()

Issue - State: closed - Opened by xlsun79 11 months ago - 14 comments
Labels: spike sorting

#676 - LFPBand population gives error in included timestamps

Issue - State: closed - Opened by sharon-chiang 11 months ago - 5 comments

#675 - Add check for data type of electrode_list in create_lfp_electrode_group

Issue - State: closed - Opened by sharon-chiang 11 months ago
Labels: enhancement, LFP

#674 - Add setup specificity

Pull Request - State: closed - Opened by CBroz1 11 months ago - 1 comment

#673 - IntervalPositionInfo column ordering on fetch1_dataframe

Pull Request - State: closed - Opened by CBroz1 11 months ago

#672 - AnalysisNWBFile.cleanup() problem

Issue - State: closed - Opened by lfrank 11 months ago - 6 comments

#670 - Prevent Curation from re-adding an existing sorting key with a new cu…

Pull Request - State: closed - Opened by samuelbray32 11 months ago - 5 comments

#669 - Electrode value mapping assumes `ndx_franklab_novela.Probe`

Issue - State: open - Opened by CBroz1 12 months ago
Labels: enhancement, common

#667 - allow for multiple cameras in video_list for DLC position notebooks 5 and 6

Issue - State: closed - Opened by emreybroyles 12 months ago - 4 comments
Labels: enhancement, position

#665 - Fix gitignore - Add merge notebook

Pull Request - State: closed - Opened by CBroz1 12 months ago - 1 comment

#664 - Key length solve: Reduce varchars

Pull Request - State: closed - Opened by CBroz1 12 months ago - 1 comment

#662 - Generate utils from `config/` scripts

Pull Request - State: closed - Opened by CBroz1 12 months ago - 1 comment

#661 - Fix Minor bugs in TrodesV1 pipeline

Pull Request - State: closed - Opened by samuelbray32 12 months ago

#660 - Fix config

Pull Request - State: closed - Opened by edeno 12 months ago

#659 - Minor bugs in lfp filtering

Pull Request - State: closed - Opened by samuelbray32 12 months ago

#658 - call on module error in dj_config.py

Issue - State: closed - Opened by andre-metzger 12 months ago

#657 - Spikesorting artifact interval debug

Pull Request - State: closed - Opened by samuelbray32 12 months ago

#656 - Insert session debug

Pull Request - State: closed - Opened by samuelbray32 12 months ago - 1 comment

#655 - Contrib docs edits

Pull Request - State: closed - Opened by CBroz1 12 months ago - 1 comment

#654 - Minor fixes - docs build, refactor common

Pull Request - State: closed - Opened by CBroz1 12 months ago - 1 comment

#653 - Increase tolerance for interval allignment

Pull Request - State: closed - Opened by samuelbray32 12 months ago - 1 comment

#652 - Add a new attribute called `electrical_series_name` to the primary key of `Raw`

Issue - State: open - Opened by khl02007 12 months ago - 4 comments
Labels: enhancement, common

#651 - Spike sorting v1 pipeline

Pull Request - State: closed - Opened by khl02007 12 months ago - 18 comments
Labels: spike sorting

#650 - Fix config for mysql 8

Pull Request - State: closed - Opened by edeno about 1 year ago

#649 - No ripple merge table

Issue - State: closed - Opened by edeno about 1 year ago - 1 comment

#648 - Add documentation and tutorial for config-based insertion method

Issue - State: closed - Opened by khl02007 about 1 year ago
Labels: documentation

#647 - Add tutorial for parallel spikesorting pipeline

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago - 1 comment

#646 - Fix key error

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#644 - Broken Dropbox link of an example NWB data

Issue - State: closed - Opened by chenhongbiao about 1 year ago - 4 comments

#643 - Spikesort populator efficiency improvements

Pull Request - State: closed - Opened by CBroz1 about 1 year ago

#642 - Support explicit 2d track definition.

Pull Request - State: closed - Opened by jsoules about 1 year ago - 2 comments

#641 - Change in default character encoding in Mysql 8 causes problems

Issue - State: closed - Opened by lfrank about 1 year ago - 2 comments

#640 - Avoid for loop and use searchsorted

Pull Request - State: closed - Opened by edeno about 1 year ago

#639 - dj.set_password does not work in Frank Lab production database (MySQL 8)

Issue - State: closed - Opened by rly about 1 year ago - 5 comments

#638 - Low verbosity error `1217` on delete prevents cascade

Issue - State: open - Opened by samuelbray32 about 1 year ago - 30 comments
Labels: Database

#637 - Spiksorting pipeline populator

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago - 5 comments

#636 - Handle case where there is only one artifact interval

Pull Request - State: closed - Opened by edeno about 1 year ago

#634 - Simplify spike sorting steps

Issue - State: closed - Opened by edeno about 1 year ago

#633 - Standards for key names

Issue - State: open - Opened by edeno about 1 year ago - 1 comment
Labels: documentation, enhancement

#631 - Remove common backup

Pull Request - State: open - Opened by edeno about 1 year ago - 1 comment

#630 - Keys too large for MySQL defaults

Issue - State: open - Opened by CBroz1 about 1 year ago - 7 comments
Labels: Database

#629 - LFP artifact optimizations

Pull Request - State: closed - Opened by CBroz1 about 1 year ago

#628 - #613 - RawPosition handle multiple pynwb position objects

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 2 comments

#627 - Fix interval map dj error

Pull Request - State: closed - Opened by samuelbray32 about 1 year ago

#626 - PositionIntervalMap population fails when called within populate transaction

Issue - State: closed - Opened by dpeg22 about 1 year ago - 7 comments
Labels: bug, position

#625 - New parcel has no points during spike sorting clustering

Issue - State: closed - Opened by xlsun79 about 1 year ago - 4 comments

#624 - No space on `/tmp/{random string}`

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 6 comments

#623 - integrity error when trying to delete from IntervalList

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 1 comment

#622 - easier to understand error messages from datajoint

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 1 comment

#621 - fix position interval issue in ripple detection

Pull Request - State: closed - Opened by MichaelCoulter about 1 year ago

#619 - Update environment_position.yml

Pull Request - State: closed - Opened by MichaelCoulter about 1 year ago - 1 comment
Labels: position

#618 - Refactor `common`

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 2 comments

#617 - Merge delete parent fix

Pull Request - State: closed - Opened by CBroz1 about 1 year ago

#616 - More notebook revisions

Pull Request - State: closed - Opened by CBroz1 about 1 year ago - 2 comments

#615 - Lfp artifact ref

Pull Request - State: closed - Opened by MichaelCoulter about 1 year ago - 1 comment

#614 - error when using merge_delete_parent

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 6 comments

#613 - RawPosition cannot handle multiple pynwb position objects

Issue - State: closed - Opened by dpeg22 about 1 year ago - 1 comment
Labels: position

#612 - Partial session insert fail state

Issue - State: closed - Opened by CBroz1 about 1 year ago - 6 comments
Labels: enhancement, good first issue

#611 - Install spikeinterface from pypi in environment.yml

Pull Request - State: closed - Opened by edeno about 1 year ago - 6 comments

#610 - permission error when inserting into ripple selection table

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 2 comments

#609 - Merge table multi-source error specificity

Issue - State: closed - Opened by MichaelCoulter about 1 year ago - 3 comments