Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#813 - Update waveform_features.py

Pull Request - State: closed - Opened by MichaelCoulter 8 months ago

#812 - Imported spike annotation

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 2 comments

#811 - Address join-compatibility issue for long chains

Pull Request - State: closed - Opened by CBroz1 8 months ago

#810 - sgi.insert_session crashes if first name has a space

Issue - State: closed - Opened by zoldello 8 months ago - 2 comments
Labels: bug, common

#808 - Blackify 24.1.1

Pull Request - State: closed - Opened by CBroz1 8 months ago

#807 - Filtering units for decoding

Pull Request - State: closed - Opened by edeno 8 months ago - 11 comments
Labels: decoding

#806 - More robust `delete_downstream_merge`

Pull Request - State: closed - Opened by CBroz1 8 months ago - 3 comments
Labels: infrastructure

#805 - artifact detection for clusterless decoding

Issue - State: closed - Opened by MichaelCoulter 8 months ago - 2 comments
Labels: enhancement, decoding

#804 - error when inserting an example session

Issue - State: closed - Opened by magland 8 months ago - 4 comments
Labels: bug, common

#803 - permissions issue when trying to populate SpikeSortingRecording

Issue - State: closed - Opened by MichaelCoulter 8 months ago - 5 comments

#802 - Update 01_Insert_Data.ipynb

Pull Request - State: closed - Opened by magland 8 months ago - 1 comment

#800 - proposal: rename test_mode configuration option to no_prompts_mode

Issue - State: open - Opened by magland 8 months ago
Labels: enhancement

#799 - Updating 00_Setup to add instructions about registering for kachery-cloud

Issue - State: open - Opened by bsharma-hiprep 8 months ago
Labels: documentation, enhancement

#798 - Dlc changes

Pull Request - State: closed - Opened by bsharma-hiprep 8 months ago - 3 comments
Labels: position

#797 - line 424 in dlc_post_estimation is removed as it stalls the pose esti…

Pull Request - State: closed - Opened by bsharma-hiprep 8 months ago - 3 comments

#796 - Proofing and minor edits to Tutorial notebooks 11-32

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 1 comment

#795 - Addressing #789, failing tests

Pull Request - State: closed - Opened by CBroz1 8 months ago - 1 comment

#794 - Merge table notebook should do a better job of explaining the purpose of merge tables

Issue - State: closed - Opened by edeno 8 months ago
Labels: enhancement

#792 - cautious delete gives foreign key constraint error

Issue - State: closed - Opened by MichaelCoulter 8 months ago - 1 comment
Labels: bug

#791 - Cautious delete restriction

Issue - State: closed - Opened by samuelbray32 8 months ago - 1 comment
Labels: bug

#790 - DecodingV1 with non lineartrack

Issue - State: closed - Opened by samuelbray32 8 months ago - 2 comments
Labels: decoding

#788 - Add `UnitSelection` table

Pull Request - State: closed - Opened by khl02007 9 months ago

#787 - runtime error in dlc pipeline

Issue - State: closed - Opened by rpswenson 9 months ago - 3 comments
Labels: bug, position

#786 - Fix _merge_repr for numeric data types

Pull Request - State: closed - Opened by CBroz1 9 months ago

#785 - More robust handling of spatial series

Issue - State: open - Opened by edeno 9 months ago
Labels: enhancement, position

#784 - NWB File name conventions drifting.

Issue - State: closed - Opened by edeno 9 months ago

#783 - WIP: Mixin resolves _nwb_table attr for Merge

Pull Request - State: closed - Opened by CBroz1 9 months ago

#782 - Decoding pipeline edits for imported data

Pull Request - State: closed - Opened by edeno 9 months ago - 4 comments

#781 - Add ability to filter sorted units in decoding

Issue - State: closed - Opened by edeno 9 months ago - 2 comments
Labels: enhancement, decoding

#780 - Insert into ImportedSpikeSorting should also be inserted into merge table

Issue - State: closed - Opened by edeno 9 months ago - 1 comment
Labels: spike sorting

#779 - Add overview to docs

Pull Request - State: closed - Opened by edeno 9 months ago

#778 - `IntervalList` is hard to use and highly redundant in contents

Issue - State: open - Opened by CBroz1 9 months ago - 4 comments
Labels: enhancement, common

#777 - Add new function to retrieve spatial series from NWB file

Pull Request - State: closed - Opened by khl02007 9 months ago - 5 comments

#776 - Docs fixes for decoding pipeline

Pull Request - State: closed - Opened by CBroz1 9 months ago - 2 comments

#775 - LFPV1 interval insert

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 1 comment

#774 - Bug when decoding_kwargs set as None

Issue - State: closed - Opened by samuelbray32 9 months ago - 3 comments
Labels: bug, decoding

#773 - A function to regenerate recording in case it is deleted in spike sorting v0

Issue - State: open - Opened by khl02007 9 months ago - 1 comment
Labels: enhancement, spike sorting

#772 - DLC notebooks 21 and 22

Pull Request - State: closed - Opened by emreybroyles 9 months ago - 2 comments

#771 - DLC Project Insert hangs

Issue - State: closed - Opened by rpswenson 9 months ago - 3 comments
Labels: bug, position

#770 - Add sampling rate to LFPV1 interval_list_name

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 2 comments

#769 - Minor decoding fixes

Pull Request - State: closed - Opened by edeno 9 months ago - 1 comment

#768 - merge_insert uniqueness

Issue - State: closed - Opened by edeno 9 months ago - 1 comment
Labels: bug, merge

#767 - Comment out video section for mini-rec in Update 20_Position_Trodes.ipynb

Pull Request - State: closed - Opened by edeno 9 months ago - 1 comment

#766 - Handle numpy arrays in `create_lfp_electrode_group`

Pull Request - State: closed - Opened by edeno 9 months ago

#765 - Use PositionOutput to get data in example notebook

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 1 comment

#764 - Update LFP notebook

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 1 comment

#763 - Unavailable key in LFPV1.make()

Issue - State: closed - Opened by samuelbray32 9 months ago - 2 comments
Labels: bug, LFP

#762 - Print session/exp summary, fix lfp target sample fetch

Pull Request - State: closed - Opened by CBroz1 9 months ago

#761 - Fix SpikeSortingOutput get_recording and get_sorting

Pull Request - State: closed - Opened by edeno 9 months ago

#760 - Fix the length of `object_id` for `ImportedSpikeSorting`

Pull Request - State: closed - Opened by khl02007 9 months ago

#759 - `merge_restrict` failure case

Issue - State: closed - Opened by edeno 9 months ago - 2 comments
Labels: bug, merge

#757 - restrict get position info by session name

Pull Request - State: closed - Opened by samuelbray32 9 months ago

#756 - Restriction specificity in load_position_info

Issue - State: closed - Opened by samuelbray32 9 months ago
Labels: bug, decoding

#755 - Update docs to reflect new notebook structure

Issue - State: closed - Opened by edeno 9 months ago - 1 comment
Labels: bug, documentation

#754 - Deleting bodyparts from BodyPart table in DLC pipeline

Issue - State: closed - Opened by emreybroyles 9 months ago - 5 comments

#753 - Dlc debug: smoothing_duration fix

Pull Request - State: closed - Opened by emreybroyles 9 months ago

#752 - Unrecognized keyword in pandas

Issue - State: closed - Opened by samuelbray32 9 months ago - 1 comment
Labels: bug, position

#750 - Move `figurl_views` to spike sorting v0

Pull Request - State: closed - Opened by khl02007 9 months ago

#749 - Centralize get_class logic in Merge

Pull Request - State: closed - Opened by CBroz1 9 months ago

#748 - Move `figurl_views` module into the spikesorting pipeline

Issue - State: closed - Opened by edeno 9 months ago

#747 - Remove logger.info() without message

Pull Request - State: closed - Opened by edeno 9 months ago

#746 - Fix PositionOutput.fetch1_dataframe bug

Pull Request - State: closed - Opened by samuelbray32 9 months ago

#745 - Error in PositionOutput.fetch1_dataframe

Issue - State: closed - Opened by samuelbray32 9 months ago
Labels: bug, position

#744 - Can't populate LFPV1 with different entries for the same nwb_file_name

Issue - State: closed - Opened by sharon-chiang 9 months ago - 10 comments
Labels: bug, LFP

#743 - Pytest revamp

Pull Request - State: closed - Opened by CBroz1 9 months ago

#742 - Interval list types

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 2 comments

#741 - Check for upsampled data in trodes fetch dataframe

Pull Request - State: closed - Opened by samuelbray32 9 months ago
Labels: position

#740 - Fetch upsampled trodes position

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 1 comment
Labels: position

#739 - Error in TrodesPosV1 fetch1_dataframe with upsampled data

Issue - State: closed - Opened by samuelbray32 9 months ago
Labels: bug, position

#738 - Spikesorting deletion prevention

Issue - State: closed - Opened by samuelbray32 10 months ago - 1 comment
Labels: bug

#737 - Class-specific implementation of _merge_restrict_parents

Issue - State: closed - Opened by samuelbray32 10 months ago - 1 comment
Labels: enhancement, merge

#736 - Update Trodes Position notebook to use PositionOutput

Issue - State: closed - Opened by edeno 10 months ago
Labels: bug, position

#735 - Add detail to sharing notebook

Pull Request - State: closed - Opened by samuelbray32 10 months ago - 2 comments

#734 - #732

Pull Request - State: closed - Opened by CBroz1 10 months ago

#733 - Circular import with KacheryZone

Issue - State: closed - Opened by samuelbray32 10 months ago - 2 comments
Labels: bug

#732 - Merge fetch_nwb errors

Issue - State: closed - Opened by edeno 10 months ago - 1 comment
Labels: bug

#731 - Decoding pipeline

Pull Request - State: closed - Opened by edeno 10 months ago - 6 comments

#730 - print -> logger

Pull Request - State: closed - Opened by CBroz1 10 months ago - 1 comment

#729 - Helper function for adding data to kachery

Pull Request - State: closed - Opened by samuelbray32 10 months ago
Labels: enhancement

#728 - Handle sortings in which no units are detected (SpikeSortingV1)

Pull Request - State: closed - Opened by khl02007 10 months ago

#727 - SpikeSortingOutput fetch_nwb returning more files

Issue - State: closed - Opened by edeno 10 months ago - 4 comments

#726 - Handle single intervals in spike sorting

Pull Request - State: closed - Opened by edeno 10 months ago

#725 - SpikeSorting fails if no units are detected

Issue - State: closed - Opened by edeno 10 months ago - 3 comments

#724 - Priority for fetch_nwb function in merge tables

Pull Request - State: closed - Opened by samuelbray32 10 months ago
Labels: bug, merge

#723 - Add `mkdir` to pass pytests

Pull Request - State: closed - Opened by CBroz1 10 months ago

#722 - Env variables for DLC

Pull Request - State: closed - Opened by CBroz1 10 months ago - 1 comment

#721 - Avoid bug in spikeinterface for low spikecounts

Pull Request - State: closed - Opened by samuelbray32 10 months ago
Labels: bug, spike sorting

#720 - Fix ref channel append error

Pull Request - State: closed - Opened by khl02007 10 months ago

#719 - Make `insert_sessions` more robust to failures to populate

Issue - State: closed - Opened by edeno 10 months ago - 4 comments
Labels: enhancement, common

#718 - Quality Metrics bug in spikeinterface

Issue - State: closed - Opened by samuelbray32 10 months ago

#717 - V0 migration model, revised

Pull Request - State: closed - Opened by CBroz1 10 months ago - 1 comment

#716 - VideoFile fails to insert in the tutorial using the minirec file

Issue - State: closed - Opened by edeno 10 months ago
Labels: documentation, position

#715 - Change method of defining base dir in get_abs_path

Pull Request - State: closed - Opened by samuelbray32 10 months ago

#714 - Hotfix for attrib error `__` -> `_nwb_table_dict`

Pull Request - State: closed - Opened by CBroz1 10 months ago

#713 - Figurl to visualize ripple detection as a way to diagnose problems

Issue - State: closed - Opened by edeno 10 months ago
Labels: enhancement, ripple