Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#873 - Spikesorting populate tries to use kilosort2 instead of mountainsort4

Issue - State: closed - Opened by rpswenson 9 months ago - 5 comments

#872 - Insertion error in fresh database

Issue - State: open - Opened by samuelbray32 9 months ago - 2 comments
Labels: bug, position, merge

#871 - Refine query of upstream tables on FigURL populate

Pull Request - State: closed - Opened by CBroz1 9 months ago - 11 comments

#870 - Tidy position

Pull Request - State: closed - Opened by CBroz1 9 months ago
Labels: position

#869 - Instanced class for spike sorting merge helper method fails on bare key

Issue - State: closed - Opened by CBroz1 9 months ago - 2 comments
Labels: bug, spike sorting

#868 - Failed insertion for UnitWaveformFeaturesGroup

Issue - State: closed - Opened by samuelbray32 9 months ago - 6 comments
Labels: bug, decoding

#867 - Fix failing chains pytests

Pull Request - State: closed - Opened by CBroz1 9 months ago

#866 - Special characters in DLC project naming

Issue - State: open - Opened by CBroz1 9 months ago
Labels: enhancement, position

#865 - Deprecation factory requires import order

Issue - State: open - Opened by CBroz1 9 months ago
Labels: bug, position

#864 - Bump version number

Pull Request - State: closed - Opened by edeno 9 months ago

#863 - Fix non-referencing option in lfp artifact detection

Pull Request - State: closed - Opened by samuelbray32 9 months ago

#862 - LFP artifact referencing inconcistency

Issue - State: closed - Opened by samuelbray32 9 months ago - 1 comment
Labels: bug, LFP

#861 - Features to allow sharing of full pipeline and results for paper publication

Issue - State: open - Opened by lfrank 9 months ago - 22 comments
Labels: enhancement, infrastructure

#860 - Failed delete propagation through PositionGroup

Issue - State: closed - Opened by samuelbray32 9 months ago - 6 comments
Labels: bug, merge

#859 - Artifact interval bug

Pull Request - State: closed - Opened by samuelbray32 9 months ago

#858 - Spike sorting artifact detection populate error

Issue - State: closed - Opened by rpswenson 9 months ago - 6 comments

#857 - Make use of waveforms_dir consistent

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 1 comment

#856 - fix CuratedSpikeSorting insert with no curation

Pull Request - State: closed - Opened by samuelbray32 9 months ago

#855 - Permission denied when inserting FigURL Curation Selection

Issue - State: closed - Opened by rpswenson 9 months ago - 2 comments

#853 - Fix `CurationV1.get_sorting`

Pull Request - State: closed - Opened by khl02007 9 months ago - 4 comments

#852 - Update spikeinterface version

Pull Request - State: closed - Opened by khl02007 9 months ago - 5 comments

#851 - Pytests round 2

Pull Request - State: closed - Opened by CBroz1 9 months ago - 1 comment

#850 - `LFPArtifactDetection` expects field missing from some defaults

Issue - State: closed - Opened by CBroz1 9 months ago
Labels: bug, LFP

#849 - Populate should leave evidence of success state

Issue - State: open - Opened by CBroz1 9 months ago - 4 comments
Labels: enhancement, common

#847 - Lacking `INSERT` permission on shared prefix

Issue - State: closed - Opened by zoldello 9 months ago - 8 comments
Labels: bug, infrastructure

#846 - Revise `dj_chains` for table -> merge -> merge downstream deletes

Pull Request - State: closed - Opened by CBroz1 9 months ago - 5 comments

#845 - kachery client not registered

Issue - State: closed - Opened by rpswenson 9 months ago - 11 comments

#843 - Permission denied when populating SpikeSortingRecording

Issue - State: closed - Opened by donghoon-shin 9 months ago - 4 comments

#842 - Reduce waveform config redundancy

Issue - State: closed - Opened by samuelbray32 9 months ago - 3 comments
Labels: enhancement

#841 - Tested DLC multicam pipeline

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 1 comment

#840 - Fix notebook name

Pull Request - State: closed - Opened by edeno 10 months ago

#839 - Tensorflow downgrade required for DLC

Issue - State: closed - Opened by samuelbray32 10 months ago - 1 comment
Labels: bug, position

#838 - Demo notebook error (`01_Insert_Data.ipynb`)

Issue - State: closed - Opened by khl02007 10 months ago - 1 comment

#837 - MUA detection notebooks not showing up in docs

Issue - State: closed - Opened by edeno 10 months ago - 1 comment
Labels: documentation

#836 - Error installing mountainsort4

Issue - State: closed - Opened by rpswenson 10 months ago - 2 comments

#835 - Fix test for update of position tools

Pull Request - State: closed - Opened by edeno 10 months ago

#834 - Multicam DLC project support

Pull Request - State: closed - Opened by edeno 10 months ago

#833 - Code stall when reading stdout in DLC pipeline

Issue - State: closed - Opened by samuelbray32 10 months ago
Labels: bug, position

#832 - Proposed structure for user roles.

Pull Request - State: closed - Opened by CBroz1 10 months ago

#831 - Failed environment build with mamba

Issue - State: closed - Opened by samuelbray32 10 months ago - 5 comments
Labels: bug, position

#830 - Delete downstream merge fails to find all relevant Merge tables

Issue - State: closed - Opened by samuelbray32 10 months ago - 8 comments
Labels: bug, merge

#829 - Single LED position being halved

Issue - State: closed - Opened by samuelbray32 10 months ago - 2 comments
Labels: bug, position

#828 - gh-actions docs fixes

Pull Request - State: closed - Opened by CBroz1 10 months ago - 1 comment

#827 - Only apply include labels filter if include_labels not empty

Pull Request - State: closed - Opened by samuelbray32 10 months ago - 1 comment

#826 - Update CITATION.cff

Pull Request - State: closed - Opened by edeno 10 months ago - 1 comment

#825 - Create Trials table that corresponds to trials in the NWB file.

Issue - State: open - Opened by edeno 10 months ago
Labels: enhancement, common

#823 - Create single notebook to demo spyglass

Issue - State: closed - Opened by edeno 10 months ago - 1 comment
Labels: documentation, enhancement

#822 - Revise dependencies

Pull Request - State: closed - Opened by CBroz1 10 months ago - 4 comments

#821 - Cautious delete bugfixes

Pull Request - State: closed - Opened by CBroz1 10 months ago

#820 - Permission check session summary uses invalid downstream restriction

Issue - State: closed - Opened by MichaelCoulter 10 months ago - 1 comment

#819 - Minor decoding fixes

Pull Request - State: closed - Opened by edeno 10 months ago - 2 comments

#818 - Cautious delete logging error

Issue - State: closed - Opened by edeno 10 months ago - 2 comments
Labels: bug

#817 - Type error in ClusterlessDecodingV1 population

Issue - State: closed - Opened by bsharma-hiprep 10 months ago - 1 comment
Labels: bug, decoding

#816 - generate_curation_uri should have curation_label and merge_groups as optional

Issue - State: open - Opened by zoldello 10 months ago
Labels: enhancement, spike sorting

#815 - Error in LFPOutput due to old parts

Issue - State: closed - Opened by samuelbray32 10 months ago - 21 comments
Labels: bug, merge

#814 - Update 41_Extracting_Clusterless_Waveform_Features.ipynb

Pull Request - State: closed - Opened by MichaelCoulter 10 months ago - 5 comments

#813 - Update waveform_features.py

Pull Request - State: closed - Opened by MichaelCoulter 10 months ago

#812 - Imported spike annotation

Pull Request - State: closed - Opened by samuelbray32 10 months ago - 2 comments

#811 - Address join-compatibility issue for long chains

Pull Request - State: closed - Opened by CBroz1 10 months ago

#810 - sgi.insert_session crashes if first name has a space

Issue - State: closed - Opened by zoldello 10 months ago - 2 comments
Labels: bug, common

#808 - Blackify 24.1.1

Pull Request - State: closed - Opened by CBroz1 10 months ago

#807 - Filtering units for decoding

Pull Request - State: closed - Opened by edeno 10 months ago - 11 comments
Labels: decoding

#806 - More robust `delete_downstream_merge`

Pull Request - State: closed - Opened by CBroz1 10 months ago - 3 comments
Labels: infrastructure

#805 - artifact detection for clusterless decoding

Issue - State: closed - Opened by MichaelCoulter 10 months ago - 2 comments
Labels: enhancement, decoding

#804 - error when inserting an example session

Issue - State: closed - Opened by magland 10 months ago - 4 comments
Labels: bug, common

#803 - permissions issue when trying to populate SpikeSortingRecording

Issue - State: closed - Opened by MichaelCoulter 10 months ago - 5 comments

#802 - Update 01_Insert_Data.ipynb

Pull Request - State: closed - Opened by magland 10 months ago - 1 comment

#800 - proposal: rename test_mode configuration option to no_prompts_mode

Issue - State: open - Opened by magland 10 months ago
Labels: enhancement

#799 - Updating 00_Setup to add instructions about registering for kachery-cloud

Issue - State: open - Opened by bsharma-hiprep 10 months ago
Labels: documentation, enhancement

#798 - Dlc changes

Pull Request - State: closed - Opened by bsharma-hiprep 10 months ago - 3 comments
Labels: position

#797 - line 424 in dlc_post_estimation is removed as it stalls the pose esti…

Pull Request - State: closed - Opened by bsharma-hiprep 10 months ago - 3 comments

#796 - Proofing and minor edits to Tutorial notebooks 11-32

Pull Request - State: closed - Opened by samuelbray32 10 months ago - 1 comment

#795 - Addressing #789, failing tests

Pull Request - State: closed - Opened by CBroz1 10 months ago - 1 comment

#794 - Merge table notebook should do a better job of explaining the purpose of merge tables

Issue - State: closed - Opened by edeno 10 months ago
Labels: enhancement

#792 - cautious delete gives foreign key constraint error

Issue - State: closed - Opened by MichaelCoulter 10 months ago - 1 comment
Labels: bug

#791 - Cautious delete restriction

Issue - State: closed - Opened by samuelbray32 10 months ago - 1 comment
Labels: bug

#790 - DecodingV1 with non lineartrack

Issue - State: closed - Opened by samuelbray32 10 months ago - 2 comments
Labels: decoding

#788 - Add `UnitSelection` table

Pull Request - State: closed - Opened by khl02007 10 months ago

#787 - runtime error in dlc pipeline

Issue - State: closed - Opened by rpswenson 10 months ago - 3 comments
Labels: bug, position

#786 - Fix _merge_repr for numeric data types

Pull Request - State: closed - Opened by CBroz1 10 months ago

#785 - More robust handling of spatial series

Issue - State: open - Opened by edeno 10 months ago
Labels: enhancement, position

#784 - NWB File name conventions drifting.

Issue - State: closed - Opened by edeno 10 months ago

#783 - WIP: Mixin resolves _nwb_table attr for Merge

Pull Request - State: closed - Opened by CBroz1 10 months ago

#782 - Decoding pipeline edits for imported data

Pull Request - State: closed - Opened by edeno 10 months ago - 4 comments

#781 - Add ability to filter sorted units in decoding

Issue - State: closed - Opened by edeno 10 months ago - 2 comments
Labels: enhancement, decoding

#780 - Insert into ImportedSpikeSorting should also be inserted into merge table

Issue - State: closed - Opened by edeno 10 months ago - 1 comment
Labels: spike sorting

#779 - Add overview to docs

Pull Request - State: closed - Opened by edeno 10 months ago

#778 - `IntervalList` is hard to use and highly redundant in contents

Issue - State: open - Opened by CBroz1 10 months ago - 4 comments
Labels: enhancement, common

#777 - Add new function to retrieve spatial series from NWB file

Pull Request - State: closed - Opened by khl02007 10 months ago - 5 comments

#776 - Docs fixes for decoding pipeline

Pull Request - State: closed - Opened by CBroz1 10 months ago - 2 comments

#775 - LFPV1 interval insert

Pull Request - State: closed - Opened by samuelbray32 10 months ago - 1 comment

#774 - Bug when decoding_kwargs set as None

Issue - State: closed - Opened by samuelbray32 11 months ago - 3 comments
Labels: bug, decoding

#773 - A function to regenerate recording in case it is deleted in spike sorting v0

Issue - State: open - Opened by khl02007 11 months ago - 1 comment
Labels: enhancement, spike sorting

#772 - DLC notebooks 21 and 22

Pull Request - State: closed - Opened by emreybroyles 11 months ago - 2 comments