Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#916 - Permission issue on figURL curation populate

Issue - State: closed - Opened by rpswenson 6 months ago - 9 comments

#915 - Merge key conflict in PositionOutput

Issue - State: closed - Opened by samuelbray32 6 months ago - 3 comments
Labels: bug, position, merge

#914 - Error when kachery sharing old analysis nwb files

Issue - State: closed - Opened by samuelbray32 6 months ago - 3 comments
Labels: bug, infrastructure

#913 - Quickfix for fetch_nwb

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#912 - Incorrect behavior for fetch_nwb in Linearized position tables

Issue - State: closed - Opened by samuelbray32 6 months ago - 5 comments
Labels: bug, position

#911 - Redundant deprecated Kachery tables in common_nwbfile

Issue - State: closed - Opened by samuelbray32 6 months ago
Labels: bug, common

#910 - Spikesorting quality of life helpers

Pull Request - State: closed - Opened by samuelbray32 6 months ago - 4 comments
Labels: spike sorting

#908 - Export notebook on JupyterHub

Issue - State: open - Opened by CBroz1 6 months ago - 2 comments

#907 - Profile pipeline code and storage to consider compute/storage tradeoffs.

Issue - State: closed - Opened by edeno 6 months ago - 1 comment
Labels: enhancement

#906 - kachery cloud permission error

Issue - State: closed - Opened by jguides 6 months ago - 6 comments

#904 - Hot fixes for clusterless `get_ahead_behind_distance` and `get_spike_times`

Pull Request - State: closed - Opened by edeno 6 months ago
Labels: bug, spike sorting, decoding

#903 - Misc Issues

Pull Request - State: closed - Opened by CBroz1 6 months ago - 3 comments

#902 - Tiny bug in Clusterless get_ahead_behind distance

Issue - State: closed - Opened by samuelbray32 6 months ago
Labels: bug, decoding

#901 - Metric parameters has unexpected argument during metric curation

Issue - State: closed - Opened by rpswenson 6 months ago - 8 comments

#900 - Quickfix: Change existing source script to spyglass version

Pull Request - State: closed - Opened by samuelbray32 6 months ago - 1 comment

#899 - Group part delete propagation

Pull Request - State: closed - Opened by samuelbray32 6 months ago - 5 comments
Labels: infrastructure

#898 - Add pynapple support

Pull Request - State: closed - Opened by edeno 6 months ago
Labels: enhancement, infrastructure

#897 - Add spyglass version to created analysis nwb files

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#894 - Save spyglass version in analysis nwb

Issue - State: closed - Opened by samuelbray32 6 months ago - 3 comments

#893 - Update call to get_template_extremum

Pull Request - State: closed - Opened by samuelbray32 6 months ago - 5 comments

#892 - When database is altered from update, add scripts and note in change log

Issue - State: closed - Opened by edeno 7 months ago - 4 comments
Labels: enhancement

#891 - Provide a better interface to run pipelines

Issue - State: open - Opened by khl02007 7 months ago - 2 comments
Labels: enhancement

#890 - Provide a better interface to view the outputs of analyses

Issue - State: closed - Opened by khl02007 7 months ago - 1 comment
Labels: enhancement

#889 - Provide better support for Neuropixels recordings

Issue - State: open - Opened by khl02007 7 months ago
Labels: enhancement

#888 - Hhmi notebook check

Pull Request - State: closed - Opened by samuelbray32 7 months ago - 1 comment

#887 - Missing copy file in HHMI demo image

Issue - State: closed - Opened by samuelbray32 7 months ago

#886 - delete from `SpikeSortingOutput` exceeds max attempts

Issue - State: closed - Opened by sharon-chiang 7 months ago - 15 comments
Labels: bug, infrastructure

#885 - `_get_exp_summary()` fails on `LabMember` table

Issue - State: closed - Opened by jguides 7 months ago - 3 comments
Labels: bug, common

#884 - Outdated call to spikeinterface

Issue - State: closed - Opened by samuelbray32 7 months ago
Labels: bug, spike sorting

#883 - Edits for docs

Pull Request - State: closed - Opened by CBroz1 7 months ago

#882 - Fix dlc video and kachery cloud config

Pull Request - State: closed - Opened by samuelbray32 7 months ago

#881 - Spyglass Config Bugs

Issue - State: closed - Opened by samuelbray32 7 months ago
Labels: bug, infrastructure

#880 - MetricCuration populate uses invalid NumpySorting attribute

Issue - State: closed - Opened by rpswenson 7 months ago - 3 comments

#879 - Document use of mixin class for custom spyglass tables

Issue - State: closed - Opened by edeno 7 months ago
Labels: documentation, enhancement

#878 - Add ability to fetch pynapple object

Issue - State: closed - Opened by edeno 7 months ago
Labels: enhancement

#877 - Insufficient privileges when inserting SortInterval table

Issue - State: closed - Opened by xlsun79 7 months ago - 2 comments
Labels: bug, spike sorting

#876 - Hhmi notebook check

Pull Request - State: closed - Opened by samuelbray32 7 months ago - 2 comments

#875 - Export logger

Pull Request - State: closed - Opened by CBroz1 7 months ago - 10 comments
Labels: enhancement, infrastructure

#874 - Tutorial notebook 32_Ripple_Detection uses non-included data

Issue - State: closed - Opened by samuelbray32 7 months ago - 2 comments

#873 - Spikesorting populate tries to use kilosort2 instead of mountainsort4

Issue - State: closed - Opened by rpswenson 7 months ago - 5 comments

#872 - Insertion error in fresh database

Issue - State: open - Opened by samuelbray32 7 months ago - 2 comments
Labels: bug, position, merge

#871 - Refine query of upstream tables on FigURL populate

Pull Request - State: closed - Opened by CBroz1 7 months ago - 11 comments

#870 - Tidy position

Pull Request - State: closed - Opened by CBroz1 7 months ago
Labels: position

#869 - Instanced class for spike sorting merge helper method fails on bare key

Issue - State: closed - Opened by CBroz1 7 months ago - 2 comments
Labels: bug, spike sorting

#868 - Failed insertion for UnitWaveformFeaturesGroup

Issue - State: closed - Opened by samuelbray32 7 months ago - 6 comments
Labels: bug, decoding

#867 - Fix failing chains pytests

Pull Request - State: closed - Opened by CBroz1 7 months ago

#866 - Special characters in DLC project naming

Issue - State: open - Opened by CBroz1 7 months ago
Labels: enhancement, position

#865 - Deprecation factory requires import order

Issue - State: open - Opened by CBroz1 7 months ago
Labels: bug, position

#864 - Bump version number

Pull Request - State: closed - Opened by edeno 7 months ago

#863 - Fix non-referencing option in lfp artifact detection

Pull Request - State: closed - Opened by samuelbray32 7 months ago

#862 - LFP artifact referencing inconcistency

Issue - State: closed - Opened by samuelbray32 7 months ago - 1 comment
Labels: bug, LFP

#861 - Features to allow sharing of full pipeline and results for paper publication

Issue - State: open - Opened by lfrank 7 months ago - 22 comments
Labels: enhancement, infrastructure

#860 - Failed delete propagation through PositionGroup

Issue - State: closed - Opened by samuelbray32 7 months ago - 6 comments
Labels: bug, merge

#859 - Artifact interval bug

Pull Request - State: closed - Opened by samuelbray32 7 months ago

#858 - Spike sorting artifact detection populate error

Issue - State: closed - Opened by rpswenson 7 months ago - 6 comments

#857 - Make use of waveforms_dir consistent

Pull Request - State: closed - Opened by samuelbray32 7 months ago - 1 comment

#856 - fix CuratedSpikeSorting insert with no curation

Pull Request - State: closed - Opened by samuelbray32 7 months ago

#855 - Permission denied when inserting FigURL Curation Selection

Issue - State: closed - Opened by rpswenson 7 months ago - 2 comments

#853 - Fix `CurationV1.get_sorting`

Pull Request - State: closed - Opened by khl02007 7 months ago - 4 comments

#852 - Update spikeinterface version

Pull Request - State: closed - Opened by khl02007 7 months ago - 5 comments

#851 - Pytests round 2

Pull Request - State: closed - Opened by CBroz1 7 months ago - 1 comment

#850 - `LFPArtifactDetection` expects field missing from some defaults

Issue - State: closed - Opened by CBroz1 7 months ago
Labels: bug, LFP

#849 - Populate should leave evidence of success state

Issue - State: open - Opened by CBroz1 7 months ago - 4 comments
Labels: enhancement, common

#847 - Lacking `INSERT` permission on shared prefix

Issue - State: closed - Opened by zoldello 8 months ago - 8 comments
Labels: bug, infrastructure

#846 - Revise `dj_chains` for table -> merge -> merge downstream deletes

Pull Request - State: closed - Opened by CBroz1 8 months ago - 5 comments

#845 - kachery client not registered

Issue - State: closed - Opened by rpswenson 8 months ago - 11 comments

#843 - Permission denied when populating SpikeSortingRecording

Issue - State: closed - Opened by donghoon-shin 8 months ago - 4 comments

#842 - Reduce waveform config redundancy

Issue - State: closed - Opened by samuelbray32 8 months ago - 3 comments
Labels: enhancement

#841 - Tested DLC multicam pipeline

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 1 comment

#840 - Fix notebook name

Pull Request - State: closed - Opened by edeno 8 months ago

#839 - Tensorflow downgrade required for DLC

Issue - State: closed - Opened by samuelbray32 8 months ago - 1 comment
Labels: bug, position

#838 - Demo notebook error (`01_Insert_Data.ipynb`)

Issue - State: closed - Opened by khl02007 8 months ago - 1 comment

#837 - MUA detection notebooks not showing up in docs

Issue - State: closed - Opened by edeno 8 months ago - 1 comment
Labels: documentation

#836 - Error installing mountainsort4

Issue - State: closed - Opened by rpswenson 8 months ago - 2 comments

#835 - Fix test for update of position tools

Pull Request - State: closed - Opened by edeno 8 months ago

#834 - Multicam DLC project support

Pull Request - State: closed - Opened by edeno 8 months ago

#833 - Code stall when reading stdout in DLC pipeline

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: bug, position

#832 - Proposed structure for user roles.

Pull Request - State: closed - Opened by CBroz1 8 months ago

#831 - Failed environment build with mamba

Issue - State: closed - Opened by samuelbray32 8 months ago - 5 comments
Labels: bug, position

#830 - Delete downstream merge fails to find all relevant Merge tables

Issue - State: closed - Opened by samuelbray32 8 months ago - 8 comments
Labels: bug, merge

#829 - Single LED position being halved

Issue - State: closed - Opened by samuelbray32 8 months ago - 2 comments
Labels: bug, position

#828 - gh-actions docs fixes

Pull Request - State: closed - Opened by CBroz1 8 months ago - 1 comment

#827 - Only apply include labels filter if include_labels not empty

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 1 comment

#826 - Update CITATION.cff

Pull Request - State: closed - Opened by edeno 8 months ago - 1 comment

#825 - Create Trials table that corresponds to trials in the NWB file.

Issue - State: open - Opened by edeno 8 months ago
Labels: enhancement, common

#823 - Create single notebook to demo spyglass

Issue - State: closed - Opened by edeno 8 months ago - 1 comment
Labels: documentation, enhancement

#822 - Revise dependencies

Pull Request - State: closed - Opened by CBroz1 8 months ago - 4 comments

#821 - Cautious delete bugfixes

Pull Request - State: closed - Opened by CBroz1 8 months ago

#819 - Minor decoding fixes

Pull Request - State: closed - Opened by edeno 8 months ago - 2 comments

#818 - Cautious delete logging error

Issue - State: closed - Opened by edeno 8 months ago - 2 comments
Labels: bug

#817 - Type error in ClusterlessDecodingV1 population

Issue - State: closed - Opened by bsharma-hiprep 8 months ago - 1 comment
Labels: bug, decoding

#816 - generate_curation_uri should have curation_label and merge_groups as optional

Issue - State: open - Opened by zoldello 8 months ago
Labels: enhancement, spike sorting

#815 - Error in LFPOutput due to old parts

Issue - State: closed - Opened by samuelbray32 8 months ago - 21 comments
Labels: bug, merge

#814 - Update 41_Extracting_Clusterless_Waveform_Features.ipynb

Pull Request - State: closed - Opened by MichaelCoulter 8 months ago - 5 comments