Ecosyste.ms: Issues

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GitHub / LorenFrankLab/spyglass issues and pull requests

#975 - Cleanup of dlc video

Pull Request - State: closed - Opened by samuelbray32 7 months ago - 2 comments

#974 - DLC Centroid populate error with spatial_series

Issue - State: closed - Opened by rpswenson 7 months ago - 5 comments

#973 - Allow dlc pipeline to run without prior position tracking

Pull Request - State: closed - Opened by edeno 7 months ago

#972 - Revert "Allow dlc pipeline to run without prior position tracking"

Pull Request - State: closed - Opened by edeno 7 months ago

#971 - Fix test fails related to #957

Pull Request - State: closed - Opened by CBroz1 7 months ago

#970 - Allow dlc pipeline to run without prior position tracking

Pull Request - State: closed - Opened by samuelbray32 7 months ago - 1 comment

#969 - Permit multiple restrict_by

Pull Request - State: closed - Opened by CBroz1 7 months ago

#968 - Fix relative pathing for mkdocstrings>=1.9.1

Pull Request - State: closed - Opened by CBroz1 7 months ago

#967 - Fix tests/doc build

Pull Request - State: closed - Opened by CBroz1 7 months ago

#966 - Add pytests to position

Pull Request - State: closed - Opened by CBroz1 7 months ago

#964 - `01_Insert_Data.ipynb` assumes lab member name will be inserted via nwb

Issue - State: closed - Opened by shijiegu 7 months ago - 1 comment

#963 - Peripheral tables cause issues: deletes, field name uniqueness, etc.

Issue - State: closed - Opened by CBroz1 7 months ago
Labels: wontfix, common, infrastructure

#962 - Incorrect Delete propagation in decoding

Issue - State: closed - Opened by samuelbray32 7 months ago - 4 comments
Labels: bug, infrastructure

#961 - Potential Errors: analysis_file name

Issue - State: closed - Opened by samuelbray32 7 months ago - 1 comment
Labels: question

#960 - QuickFix: Bug in curation v0 make

Pull Request - State: closed - Opened by samuelbray32 7 months ago

#959 - Bug in Spikesorting v0 curation

Issue - State: closed - Opened by samuelbray32 7 months ago
Labels: bug, spike sorting

#958 - SpikeSortingRecording Populate Error

Issue - State: closed - Opened by denissemorales 7 months ago - 3 comments
Labels: question

#957 - Transaction on `populate_all_common`

Pull Request - State: closed - Opened by CBroz1 7 months ago - 1 comment

#956 - Dandi export and read

Pull Request - State: closed - Opened by samuelbray32 7 months ago - 5 comments

#955 - Fix bug report template html

Pull Request - State: closed - Opened by CBroz1 7 months ago

#954 - Insufficient privileges.', "INSERT command denied to user for my custom table

Issue - State: closed - Opened by shijiegu 7 months ago - 14 comments
Labels: Database

#953 - Uniqueness of object_ids in generated analysis nwb files

Issue - State: closed - Opened by samuelbray32 7 months ago - 3 comments
Labels: bug, enhancement

#952 - error inserting session: 'str' object has no attribute 'get_space'

Issue - State: closed - Opened by magland 7 months ago - 2 comments

#951 - `delete_downstream_merge` should capture all parts with fk-refs

Issue - State: closed - Opened by MichaelCoulter 7 months ago - 4 comments
Labels: infrastructure

#950 - Running DLC Pose Estimation without RawPosition

Issue - State: closed - Opened by rpswenson 7 months ago - 11 comments
Labels: enhancement, position

#949 - Long distance restrictions

Pull Request - State: closed - Opened by CBroz1 7 months ago - 3 comments

#948 - Delete should prevent orphans in externals and `IntervalList`

Issue - State: closed - Opened by xlsun79 7 months ago - 2 comments
Labels: enhancement, infrastructure

#947 - WIP: support .nwb.lindi.json files

Pull Request - State: closed - Opened by magland 7 months ago - 3 comments

#946 - Part delete edits

Pull Request - State: closed - Opened by CBroz1 7 months ago - 1 comment

#945 - Add system requirements and typical installation time

Pull Request - State: closed - Opened by edeno 7 months ago

#944 - broken link in docs

Issue - State: open - Opened by magland 7 months ago

#943 - `IntervalList` cautious insert

Pull Request - State: closed - Opened by CBroz1 7 months ago - 5 comments

#941 - Log when file accessed

Pull Request - State: closed - Opened by CBroz1 7 months ago

#940 - Fix bug on empty delete in merge table

Pull Request - State: closed - Opened by samuelbray32 7 months ago

#939 - CurationV1 does not track a metrics source.

Issue - State: open - Opened by samuelbray32 8 months ago - 1 comment
Labels: spike sorting

#938 - Spikeinterface parameter name change

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: bug, spike sorting

#937 - Add logging of AnalysisNwbfile creation time and file size

Pull Request - State: closed - Opened by CBroz1 8 months ago - 2 comments
Labels: infrastructure

#936 - Tutorial notebook demo database

Issue - State: open - Opened by samuelbray32 8 months ago - 2 comments
Labels: documentation, enhancement

#935 - Add `hatch` developer instructions to docs

Issue - State: open - Opened by CBroz1 8 months ago
Labels: documentation, enhancement

#934 - Implement adding data from config file

Pull Request - State: closed - Opened by calderast 8 months ago - 4 comments
Labels: infrastructure

#933 - `TableChains` cannot process edge from alias to DLCCentroid

Issue - State: closed - Opened by CBroz1 8 months ago - 2 comments

#932 - Uneeded error when delete on empty restriction in merge table

Issue - State: closed - Opened by samuelbray32 8 months ago - 1 comment
Labels: bug, merge

#931 - Cannot delete or update a parent row when deleting tables that have downstream merge tables

Issue - State: closed - Opened by xlsun79 8 months ago - 6 comments
Labels: infrastructure

#930 - Mixin method to restrict table by keys of upstream tables

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 3 comments
Labels: infrastructure

#929 - Fix improper uses of strip

Pull Request - State: closed - Opened by edeno 8 months ago

#928 - Artifact detection across sort groups

Issue - State: open - Opened by CBroz1 8 months ago
Labels: enhancement, spike sorting

#927 - State script file to unix timeframe

Issue - State: open - Opened by CBroz1 8 months ago - 2 comments
Labels: enhancement, common

#926 - Deprecate use of env variables when loading config

Issue - State: open - Opened by CBroz1 8 months ago
Labels: enhancement, infrastructure

#925 - Quickfix for removal of old kachery tables

Pull Request - State: closed - Opened by samuelbray32 8 months ago

#924 - Improper restriction of merge tables during delete in spikesortingv1

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: bug, spike sorting, merge

#923 - General-purporse key lookup tool(s) for buried primary keys

Issue - State: closed - Opened by CBroz1 8 months ago - 3 comments
Labels: enhancement, infrastructure

#922 - Check for entry in merge part table prior to insert

Pull Request - State: closed - Opened by samuelbray32 8 months ago

#921 - Metric Curation Populate inhomogeneous shape for probe data

Issue - State: closed - Opened by rpswenson 8 months ago - 10 comments
Labels: spike sorting

#920 - Duplicate entries created in Merge table

Issue - State: closed - Opened by samuelbray32 8 months ago - 1 comment
Labels: bug, spike sorting, merge

#919 - Implementation of import config

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: enhancement, infrastructure

#918 - Kachery fixes

Pull Request - State: closed - Opened by samuelbray32 8 months ago

#917 - Recompute method in computed tables

Issue - State: open - Opened by lfrank 8 months ago - 3 comments
Labels: enhancement, infrastructure

#916 - Permission issue on figURL curation populate

Issue - State: closed - Opened by rpswenson 8 months ago - 9 comments

#915 - Merge key conflict in PositionOutput

Issue - State: closed - Opened by samuelbray32 8 months ago - 3 comments
Labels: bug, position, merge

#914 - Error when kachery sharing old analysis nwb files

Issue - State: closed - Opened by samuelbray32 8 months ago - 3 comments
Labels: bug, infrastructure

#913 - Quickfix for fetch_nwb

Pull Request - State: closed - Opened by samuelbray32 8 months ago

#912 - Incorrect behavior for fetch_nwb in Linearized position tables

Issue - State: closed - Opened by samuelbray32 8 months ago - 5 comments
Labels: bug, position

#911 - Redundant deprecated Kachery tables in common_nwbfile

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: bug, common

#910 - Spikesorting quality of life helpers

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 4 comments
Labels: spike sorting

#908 - Export notebook on JupyterHub

Issue - State: open - Opened by CBroz1 8 months ago - 2 comments

#907 - Profile pipeline code and storage to consider compute/storage tradeoffs.

Issue - State: closed - Opened by edeno 8 months ago - 1 comment
Labels: enhancement

#906 - kachery cloud permission error

Issue - State: closed - Opened by jguides 8 months ago - 6 comments

#904 - Hot fixes for clusterless `get_ahead_behind_distance` and `get_spike_times`

Pull Request - State: closed - Opened by edeno 8 months ago
Labels: bug, spike sorting, decoding

#903 - Misc Issues

Pull Request - State: closed - Opened by CBroz1 8 months ago - 3 comments

#902 - Tiny bug in Clusterless get_ahead_behind distance

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: bug, decoding

#901 - Metric parameters has unexpected argument during metric curation

Issue - State: closed - Opened by rpswenson 8 months ago - 8 comments

#900 - Quickfix: Change existing source script to spyglass version

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 1 comment

#899 - Group part delete propagation

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 5 comments
Labels: infrastructure

#898 - Add pynapple support

Pull Request - State: closed - Opened by edeno 8 months ago
Labels: enhancement, infrastructure

#897 - Add spyglass version to created analysis nwb files

Pull Request - State: closed - Opened by samuelbray32 8 months ago

#894 - Save spyglass version in analysis nwb

Issue - State: closed - Opened by samuelbray32 8 months ago - 3 comments

#893 - Update call to get_template_extremum

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 5 comments

#892 - When database is altered from update, add scripts and note in change log

Issue - State: closed - Opened by edeno 8 months ago - 4 comments
Labels: enhancement

#891 - Provide a better interface to run pipelines

Issue - State: open - Opened by khl02007 8 months ago - 2 comments
Labels: enhancement

#890 - Provide a better interface to view the outputs of analyses

Issue - State: closed - Opened by khl02007 8 months ago - 1 comment
Labels: enhancement

#889 - Provide better support for Neuropixels recordings

Issue - State: open - Opened by khl02007 8 months ago
Labels: enhancement

#888 - Hhmi notebook check

Pull Request - State: closed - Opened by samuelbray32 8 months ago - 1 comment

#887 - Missing copy file in HHMI demo image

Issue - State: closed - Opened by samuelbray32 8 months ago

#886 - delete from `SpikeSortingOutput` exceeds max attempts

Issue - State: closed - Opened by sharon-chiang 8 months ago - 15 comments
Labels: bug, infrastructure

#885 - `_get_exp_summary()` fails on `LabMember` table

Issue - State: closed - Opened by jguides 8 months ago - 3 comments
Labels: bug, common

#884 - Outdated call to spikeinterface

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: bug, spike sorting

#883 - Edits for docs

Pull Request - State: closed - Opened by CBroz1 8 months ago

#882 - Fix dlc video and kachery cloud config

Pull Request - State: closed - Opened by samuelbray32 8 months ago

#881 - Spyglass Config Bugs

Issue - State: closed - Opened by samuelbray32 8 months ago
Labels: bug, infrastructure

#880 - MetricCuration populate uses invalid NumpySorting attribute

Issue - State: closed - Opened by rpswenson 9 months ago - 3 comments

#879 - Document use of mixin class for custom spyglass tables

Issue - State: closed - Opened by edeno 9 months ago
Labels: documentation, enhancement

#878 - Add ability to fetch pynapple object

Issue - State: closed - Opened by edeno 9 months ago
Labels: enhancement

#877 - Insufficient privileges when inserting SortInterval table

Issue - State: closed - Opened by xlsun79 9 months ago - 2 comments
Labels: bug, spike sorting

#876 - Hhmi notebook check

Pull Request - State: closed - Opened by samuelbray32 9 months ago - 2 comments

#875 - Export logger

Pull Request - State: closed - Opened by CBroz1 9 months ago - 10 comments
Labels: enhancement, infrastructure

#874 - Tutorial notebook 32_Ripple_Detection uses non-included data

Issue - State: closed - Opened by samuelbray32 9 months ago - 2 comments