Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#1075 - Revise mixin structure to reflect table types

Issue - State: open - Opened by CBroz1 3 months ago
Labels: enhancement, infrastructure

#1074 - NWB ingestion fixes

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1073 - Decode fixes

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1072 - fix fetch efficiency in insert_curation

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1071 - Fix fetch call

Issue - State: closed - Opened by samuelbray32 3 months ago

#1070 - Curation v0 fetching incorrectly

Issue - State: closed - Opened by samuelbray32 3 months ago
Labels: bug, spike sorting

#1069 - Spikesort artifact fixes

Pull Request - State: closed - Opened by samuelbray32 3 months ago - 1 comment

#1068 - Inconsistent parameter name in artifact util functions

Issue - State: closed - Opened by samuelbray32 3 months ago
Labels: bug, spike sorting

#1067 - Allow disable transaction for select populates

Pull Request - State: closed - Opened by CBroz1 4 months ago - 1 comment

#1066 - Ban tables in distance restrict bugfix

Pull Request - State: closed - Opened by CBroz1 4 months ago

#1064 - Part table not caught by `delete_downstream_parts`

Issue - State: closed - Opened by MichaelCoulter 4 months ago - 4 comments

#1063 - Add check threads util

Pull Request - State: closed - Opened by CBroz1 4 months ago

#1062 - #1053 bugfix

Pull Request - State: closed - Opened by CBroz1 4 months ago

#1061 - Remove `common_ripple`

Pull Request - State: closed - Opened by CBroz1 4 months ago

#1060 - Spikesorting merge table calls undefined `fetch_spike_data`

Issue - State: closed - Opened by CBroz1 4 months ago - 1 comment
Labels: spike sorting

#1059 - `common_ripple` underused and misdeclared

Issue - State: closed - Opened by CBroz1 4 months ago - 1 comment
Labels: ripple, Database

#1058 - Sparse Waveforms from spikeinterface

Issue - State: open - Opened by samuelbray32 4 months ago - 1 comment
Labels: bug, decoding

#1057 - Replication tool

Pull Request - State: open - Opened by CBroz1 4 months ago
Labels: enhancement

#1056 - Moseq Pipeline

Pull Request - State: open - Opened by samuelbray32 4 months ago - 1 comment
Labels: enhancement, position

#1055 - Revise get_group_by_shank

Pull Request - State: closed - Opened by CBroz1 4 months ago - 3 comments

#1054 - get_group_by shank doesn't return value

Issue - State: closed - Opened by samuelbray32 4 months ago

#1053 - Reduce duplication 2

Pull Request - State: closed - Opened by CBroz1 4 months ago

#1052 - Quick fix for parralel populate and spike unit naming

Pull Request - State: closed - Opened by samuelbray32 4 months ago

#1051 - Update CHANGELOG.md

Pull Request - State: closed - Opened by MichaelCoulter 4 months ago - 1 comment

#1050 - Reduce duplication 1

Pull Request - State: closed - Opened by CBroz1 4 months ago

#1049 - Object oriented approach to `dj_decoder_conversion.py`

Issue - State: open - Opened by CBroz1 4 months ago
Labels: enhancement, decoding

#1048 - Export updates

Pull Request - State: closed - Opened by CBroz1 4 months ago - 1 comment

#1047 - UnitWaveformFeaturesGroup Integrity

Issue - State: closed - Opened by samuelbray32 4 months ago
Labels: decoding

#1046 - quick fix for issue 1045

Pull Request - State: closed - Opened by MichaelCoulter 4 months ago - 2 comments

#1045 - LFPBandV1 fetches interval list of inverted shape

Issue - State: closed - Opened by CBroz1 4 months ago - 5 comments

#1044 - No enforced integrity between geometry in `Probe` table and the spikesorting geometries used

Issue - State: closed - Opened by samuelbray32 4 months ago
Labels: bug, common, NWB ingestion

#1043 - Distribute processes across gpu devices during populate calls

Issue - State: closed - Opened by samuelbray32 4 months ago - 2 comments
Labels: enhancement, decoding

#1042 - Source key in PositionSource is hard coded to trodes

Issue - State: open - Opened by samuelbray32 4 months ago
Labels: enhancement, common, NWB ingestion

#1041 - Failed linking of camera defined by config and TaskEpoch during insert_session

Issue - State: closed - Opened by samuelbray32 4 months ago - 1 comment
Labels: bug, common, NWB ingestion

#1040 - Can't define a new probe type using a config in Probe.insert_nwbfile

Issue - State: closed - Opened by samuelbray32 4 months ago
Labels: enhancement, common, NWB ingestion

#1039 - Set `sparse=False` during waveform extraction

Pull Request - State: closed - Opened by khl02007 4 months ago

#1038 - SpikeSortingRecording whitens data or not.

Issue - State: open - Opened by shijiegu 4 months ago - 2 comments

#1037 - Conservative error in nightly cleanup misses orphans

Issue - State: open - Opened by samuelbray32 4 months ago
Labels: common

#1036 - MetricCuration populate problem

Issue - State: closed - Opened by denissemorales 4 months ago - 1 comment

#1035 - Periph table fallback on TableChain for experimenter summary

Pull Request - State: closed - Opened by CBroz1 5 months ago - 5 comments

#1034 - Bugfixes from 870

Pull Request - State: closed - Opened by CBroz1 5 months ago

#1033 - Fix interpolation of nans in decoding position

Pull Request - State: closed - Opened by samuelbray32 5 months ago

#1032 - Interpolation of nan values in PositionGroup

Issue - State: closed - Opened by samuelbray32 5 months ago
Labels: bug, decoding, position

#1031 - `ValueError` on non-spy table for `_get_exp_summary()`

Issue - State: closed - Opened by MichaelCoulter 5 months ago - 2 comments

#1030 - Table Metadata Lock by long populate calls

Issue - State: closed - Opened by samuelbray32 5 months ago - 5 comments
Labels: bug, common, infrastructure

#1029 - Re-organize docs

Pull Request - State: closed - Opened by CBroz1 5 months ago - 3 comments

#1028 - Citation issues

Issue - State: closed - Opened by CBroz1 5 months ago - 1 comment

#1027 - Spike Unit Annotation

Pull Request - State: closed - Opened by samuelbray32 5 months ago - 3 comments

#1026 - Group integrity

Pull Request - State: closed - Opened by samuelbray32 5 months ago

#1025 - Remove `SessionGroup`?

Issue - State: closed - Opened by CBroz1 5 months ago - 3 comments

#1024 - Disable AnalysisFile logging

Pull Request - State: closed - Opened by CBroz1 5 months ago - 2 comments

#1023 - #1016 - Allow `ModuleNotFoundError`

Pull Request - State: closed - Opened by CBroz1 5 months ago

#1022 - PositionGroup integrity

Issue - State: closed - Opened by samuelbray32 5 months ago - 2 comments
Labels: decoding, position

#1021 - #980

Pull Request - State: closed - Opened by CBroz1 5 months ago

#1020 - AnalysisNwbfileLog primary key character length prevents insertion

Issue - State: closed - Opened by jguides 5 months ago - 1 comment

#1019 - Position vs. Derived Position - where to Merge

Issue - State: closed - Opened by CBroz1 5 months ago
Labels: wontfix

#1017 - Merge table efficiency

Pull Request - State: closed - Opened by samuelbray32 5 months ago

#1016 - `ModuleNotFoundError` vs. `ImportError`

Issue - State: closed - Opened by CBroz1 5 months ago - 4 comments
Labels: bug

#1015 - Speed up fetch_nwb

Pull Request - State: closed - Opened by samuelbray32 5 months ago - 3 comments

#1014 - Remove kachery_client dependency

Pull Request - State: closed - Opened by samuelbray32 5 months ago

#1013 - Outdated import (?)

Issue - State: closed - Opened by samuelbray32 5 months ago
Labels: bug

#1012 - Spikesorting Unit Annotation

Issue - State: closed - Opened by samuelbray32 5 months ago
Labels: enhancement, spike sorting

#1011 - remove problem key in DLCPosV1 fetch_nwb attrs

Pull Request - State: closed - Opened by samuelbray32 5 months ago

#1010 - SQL error in DLCPosV1.fetch_nwb()

Issue - State: closed - Opened by samuelbray32 5 months ago
Labels: bug, position

#1009 - Fix artifact `list_triggers`

Pull Request - State: closed - Opened by khl02007 5 months ago - 3 comments

#1008 - Add upsampling option to PositionGroup

Pull Request - State: closed - Opened by samuelbray32 5 months ago - 1 comment

#1007 - Can't correspond waveforms to spike times

Issue - State: closed - Opened by rsnevers 5 months ago - 5 comments
Labels: spike sorting

#1006 - Upsample DLC Position

Issue - State: closed - Opened by samuelbray32 5 months ago
Labels: enhancement, position

#1005 - merged_sorting_extractor not found

Issue - State: open - Opened by jguides 6 months ago - 4 comments

#1004 - Fix bug in change in analysis_file object_id

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#1003 - Remove classes for usused tables

Pull Request - State: closed - Opened by CBroz1 6 months ago - 4 comments

#1002 - Prevent delete orphans

Pull Request - State: closed - Opened by CBroz1 6 months ago - 14 comments

#1001 - Non-daemon parallel populate

Pull Request - State: closed - Opened by samuelbray32 6 months ago - 1 comment

#1000 - Multiprocess populate when make function uses parallelization

Issue - State: closed - Opened by samuelbray32 6 months ago - 3 comments
Labels: enhancement, infrastructure

#999 - Minor fixes

Pull Request - State: closed - Opened by samuelbray32 6 months ago - 1 comment

#998 - Mua notebook

Pull Request - State: closed - Opened by denissemorales 6 months ago - 3 comments

#997 - Add Common Errors doc

Pull Request - State: closed - Opened by CBroz1 6 months ago

#996 - Add docstrings to SortedSpikesGroup and Decoding methods

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#995 - Resolve case of shared file use in multiple Dandisets

Issue - State: open - Opened by samuelbray32 6 months ago - 1 comment
Labels: enhancement, infrastructure

#994 - Add ability to set smoothing sigma in get_firing_rate

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#993 - Give UUID to artifact interval

Pull Request - State: closed - Opened by khl02007 6 months ago - 13 comments

#992 - Insert session from Dandi

Issue - State: open - Opened by samuelbray32 6 months ago
Labels: enhancement, infrastructure

#991 - AnalysisNwbfileLog requires insert/delete privileges for read-only users

Issue - State: closed - Opened by CBroz1 6 months ago - 1 comment
Labels: infrastructure

#990 - argument error in notebook

Issue - State: closed - Opened by samuelbray32 6 months ago
Labels: bug

#989 - Length mismatch for upsampled data in `fill_nan`

Issue - State: open - Opened by CBroz1 6 months ago - 2 comments
Labels: bug, position

#988 - Automated pytests of position pipeline in GitHub actions

Issue - State: closed - Opened by CBroz1 6 months ago
Labels: wontfix

#987 - `IntegrityError` or foreign key error when inserting into table

Issue - State: closed - Opened by xlsun79 6 months ago - 1 comment
Labels: invalid, question

#986 - Implement `spikesorting.v1.MetricCuration.get_waveforms`

Issue - State: open - Opened by CBroz1 6 months ago
Labels: enhancement, spike sorting

#984 - `dj_graph` prompt to spawn missing classes

Issue - State: open - Opened by CBroz1 6 months ago
Labels: enhancement, infrastructure

#983 - Don't insert lab member when creating lab team

Pull Request - State: closed - Opened by khl02007 6 months ago - 5 comments

#982 - Replace old `join` call with `cascade`

Pull Request - State: closed - Opened by CBroz1 6 months ago

#981 - 'TableChain' object has no attribute 'join'

Issue - State: closed - Opened by xlsun79 6 months ago - 1 comment

#980 - Insufficient varchar length for `AnalysisNwbfileLog.table`

Issue - State: closed - Opened by CBroz1 6 months ago - 2 comments
Labels: common

#979 - Fix name parsing

Pull Request - State: closed - Opened by khl02007 6 months ago - 7 comments

#978 - generate merge suggestions for all sorted clusters

Issue - State: open - Opened by MichaelCoulter 6 months ago - 5 comments
Labels: enhancement, spike sorting

#977 - Merge duplicate funcs

Issue - State: open - Opened by CBroz1 6 months ago - 4 comments
Labels: enhancement

#976 - Remove unused tables

Issue - State: closed - Opened by CBroz1 7 months ago - 7 comments
Labels: Database