Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#1016 - `ModuleNotFoundError` vs. `ImportError`

Issue - State: closed - Opened by CBroz1 3 months ago - 4 comments
Labels: bug

#1015 - Speed up fetch_nwb

Pull Request - State: closed - Opened by samuelbray32 3 months ago - 3 comments

#1014 - Remove kachery_client dependency

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1013 - Outdated import (?)

Issue - State: closed - Opened by samuelbray32 3 months ago
Labels: bug

#1012 - Spikesorting Unit Annotation

Issue - State: closed - Opened by samuelbray32 3 months ago
Labels: enhancement, spike sorting

#1011 - remove problem key in DLCPosV1 fetch_nwb attrs

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1010 - SQL error in DLCPosV1.fetch_nwb()

Issue - State: closed - Opened by samuelbray32 3 months ago
Labels: bug, position

#1009 - Fix artifact `list_triggers`

Pull Request - State: closed - Opened by khl02007 3 months ago - 3 comments

#1008 - Add upsampling option to PositionGroup

Pull Request - State: closed - Opened by samuelbray32 3 months ago - 1 comment

#1007 - Can't correspond waveforms to spike times

Issue - State: open - Opened by rsnevers 3 months ago - 5 comments
Labels: spike sorting

#1006 - Upsample DLC Position

Issue - State: closed - Opened by samuelbray32 4 months ago
Labels: enhancement, position

#1005 - merged_sorting_extractor not found

Issue - State: open - Opened by jguides 4 months ago - 4 comments

#1004 - Fix bug in change in analysis_file object_id

Pull Request - State: closed - Opened by samuelbray32 4 months ago

#1003 - Remove classes for usused tables

Pull Request - State: closed - Opened by CBroz1 4 months ago - 4 comments

#1002 - Prevent delete orphans

Pull Request - State: closed - Opened by CBroz1 4 months ago - 14 comments

#1001 - Non-daemon parallel populate

Pull Request - State: closed - Opened by samuelbray32 4 months ago - 1 comment

#1000 - Multiprocess populate when make function uses parallelization

Issue - State: closed - Opened by samuelbray32 4 months ago - 3 comments
Labels: enhancement, infrastructure

#999 - Minor fixes

Pull Request - State: closed - Opened by samuelbray32 4 months ago - 1 comment

#998 - Mua notebook

Pull Request - State: closed - Opened by denissemorales 4 months ago - 3 comments

#997 - Add Common Errors doc

Pull Request - State: closed - Opened by CBroz1 4 months ago

#996 - Add docstrings to SortedSpikesGroup and Decoding methods

Pull Request - State: closed - Opened by samuelbray32 4 months ago

#995 - Resolve case of shared file use in multiple Dandisets

Issue - State: open - Opened by samuelbray32 4 months ago
Labels: enhancement, infrastructure

#994 - Add ability to set smoothing sigma in get_firing_rate

Pull Request - State: closed - Opened by samuelbray32 4 months ago

#993 - Give UUID to artifact interval

Pull Request - State: closed - Opened by khl02007 4 months ago - 13 comments

#992 - Insert session from Dandi

Issue - State: open - Opened by samuelbray32 4 months ago
Labels: enhancement, infrastructure

#991 - AnalysisNwbfileLog requires insert/delete privileges for read-only users

Issue - State: closed - Opened by CBroz1 4 months ago - 1 comment
Labels: infrastructure

#990 - argument error in notebook

Issue - State: closed - Opened by samuelbray32 4 months ago
Labels: bug

#989 - Length mismatch for upsampled data in `fill_nan`

Issue - State: open - Opened by CBroz1 4 months ago - 2 comments
Labels: bug, position

#988 - Automated pytests of position pipeline in GitHub actions

Issue - State: closed - Opened by CBroz1 4 months ago
Labels: wontfix

#987 - `IntegrityError` or foreign key error when inserting into table

Issue - State: closed - Opened by xlsun79 4 months ago - 1 comment
Labels: invalid, question

#986 - Implement `spikesorting.v1.MetricCuration.get_waveforms`

Issue - State: open - Opened by CBroz1 5 months ago
Labels: enhancement, spike sorting

#984 - `dj_graph` prompt to spawn missing classes

Issue - State: open - Opened by CBroz1 5 months ago
Labels: enhancement, infrastructure

#983 - Don't insert lab member when creating lab team

Pull Request - State: closed - Opened by khl02007 5 months ago - 5 comments

#982 - Replace old `join` call with `cascade`

Pull Request - State: closed - Opened by CBroz1 5 months ago

#981 - 'TableChain' object has no attribute 'join'

Issue - State: closed - Opened by xlsun79 5 months ago - 1 comment

#980 - Insufficient varchar length for `AnalysisNwbfileLog.table`

Issue - State: closed - Opened by CBroz1 5 months ago - 2 comments
Labels: common

#979 - Fix name parsing

Pull Request - State: closed - Opened by khl02007 5 months ago - 7 comments

#978 - generate merge suggestions for all sorted clusters

Issue - State: open - Opened by MichaelCoulter 5 months ago - 5 comments
Labels: enhancement, spike sorting

#977 - Merge duplicate funcs

Issue - State: open - Opened by CBroz1 5 months ago - 4 comments
Labels: enhancement

#976 - Remove unused tables

Issue - State: closed - Opened by CBroz1 5 months ago - 7 comments
Labels: Database

#975 - Cleanup of dlc video

Pull Request - State: closed - Opened by samuelbray32 5 months ago - 2 comments

#974 - DLC Centroid populate error with spatial_series

Issue - State: closed - Opened by rpswenson 5 months ago - 5 comments

#973 - Allow dlc pipeline to run without prior position tracking

Pull Request - State: closed - Opened by edeno 5 months ago

#972 - Revert "Allow dlc pipeline to run without prior position tracking"

Pull Request - State: closed - Opened by edeno 5 months ago

#971 - Fix test fails related to #957

Pull Request - State: closed - Opened by CBroz1 5 months ago

#970 - Allow dlc pipeline to run without prior position tracking

Pull Request - State: closed - Opened by samuelbray32 5 months ago - 1 comment

#969 - Permit multiple restrict_by

Pull Request - State: closed - Opened by CBroz1 5 months ago

#968 - Fix relative pathing for mkdocstrings>=1.9.1

Pull Request - State: closed - Opened by CBroz1 5 months ago

#967 - Fix tests/doc build

Pull Request - State: closed - Opened by CBroz1 5 months ago

#966 - Add pytests to position

Pull Request - State: closed - Opened by CBroz1 5 months ago

#964 - `01_Insert_Data.ipynb` assumes lab member name will be inserted via nwb

Issue - State: closed - Opened by shijiegu 5 months ago - 1 comment

#963 - Peripheral tables cause issues: deletes, field name uniqueness, etc.

Issue - State: closed - Opened by CBroz1 5 months ago
Labels: wontfix, common, infrastructure

#962 - Incorrect Delete propagation in decoding

Issue - State: closed - Opened by samuelbray32 5 months ago - 4 comments
Labels: bug, infrastructure

#961 - Potential Errors: analysis_file name

Issue - State: closed - Opened by samuelbray32 5 months ago - 1 comment
Labels: question

#960 - QuickFix: Bug in curation v0 make

Pull Request - State: closed - Opened by samuelbray32 5 months ago

#959 - Bug in Spikesorting v0 curation

Issue - State: closed - Opened by samuelbray32 5 months ago
Labels: bug, spike sorting

#958 - SpikeSortingRecording Populate Error

Issue - State: closed - Opened by denissemorales 5 months ago - 3 comments
Labels: question

#957 - Transaction on `populate_all_common`

Pull Request - State: closed - Opened by CBroz1 5 months ago - 1 comment

#956 - Dandi export and read

Pull Request - State: closed - Opened by samuelbray32 5 months ago - 5 comments

#955 - Fix bug report template html

Pull Request - State: closed - Opened by CBroz1 5 months ago

#954 - Insufficient privileges.', "INSERT command denied to user for my custom table

Issue - State: closed - Opened by shijiegu 5 months ago - 14 comments
Labels: Database

#953 - Uniqueness of object_ids in generated analysis nwb files

Issue - State: closed - Opened by samuelbray32 5 months ago - 3 comments
Labels: bug, enhancement

#952 - error inserting session: 'str' object has no attribute 'get_space'

Issue - State: closed - Opened by magland 5 months ago - 2 comments

#951 - `delete_downstream_merge` should capture all parts with fk-refs

Issue - State: closed - Opened by MichaelCoulter 5 months ago - 4 comments
Labels: infrastructure

#950 - Running DLC Pose Estimation without RawPosition

Issue - State: closed - Opened by rpswenson 5 months ago - 11 comments
Labels: enhancement, position

#949 - Long distance restrictions

Pull Request - State: closed - Opened by CBroz1 5 months ago - 3 comments

#948 - Delete should prevent orphans in externals and `IntervalList`

Issue - State: closed - Opened by xlsun79 5 months ago - 2 comments
Labels: enhancement, infrastructure

#947 - WIP: support .nwb.lindi.json files

Pull Request - State: closed - Opened by magland 5 months ago - 3 comments

#946 - Part delete edits

Pull Request - State: closed - Opened by CBroz1 5 months ago - 1 comment

#945 - Add system requirements and typical installation time

Pull Request - State: closed - Opened by edeno 5 months ago

#944 - broken link in docs

Issue - State: open - Opened by magland 5 months ago

#943 - `IntervalList` cautious insert

Pull Request - State: closed - Opened by CBroz1 5 months ago - 5 comments

#941 - Log when file accessed

Pull Request - State: closed - Opened by CBroz1 5 months ago

#940 - Fix bug on empty delete in merge table

Pull Request - State: closed - Opened by samuelbray32 5 months ago

#939 - CurationV1 does not track a metrics source.

Issue - State: open - Opened by samuelbray32 6 months ago - 1 comment
Labels: spike sorting

#938 - Spikeinterface parameter name change

Issue - State: closed - Opened by samuelbray32 6 months ago
Labels: bug, spike sorting

#937 - Add logging of AnalysisNwbfile creation time and file size

Pull Request - State: closed - Opened by CBroz1 6 months ago - 2 comments
Labels: infrastructure

#936 - Tutorial notebook demo database

Issue - State: open - Opened by samuelbray32 6 months ago - 1 comment
Labels: documentation, enhancement

#935 - Add `hatch` developer instructions to docs

Issue - State: open - Opened by CBroz1 6 months ago
Labels: documentation, enhancement

#934 - Implement adding data from config file

Pull Request - State: closed - Opened by calderast 6 months ago - 4 comments
Labels: infrastructure

#933 - `TableChains` cannot process edge from alias to DLCCentroid

Issue - State: closed - Opened by CBroz1 6 months ago - 2 comments

#932 - Uneeded error when delete on empty restriction in merge table

Issue - State: closed - Opened by samuelbray32 6 months ago - 1 comment
Labels: bug, merge

#931 - Cannot delete or update a parent row when deleting tables that have downstream merge tables

Issue - State: closed - Opened by xlsun79 6 months ago - 6 comments
Labels: infrastructure

#930 - Mixin method to restrict table by keys of upstream tables

Pull Request - State: closed - Opened by samuelbray32 6 months ago - 3 comments
Labels: infrastructure

#929 - Fix improper uses of strip

Pull Request - State: closed - Opened by edeno 6 months ago

#928 - Artifact detection across sort groups

Issue - State: open - Opened by CBroz1 6 months ago
Labels: enhancement, spike sorting

#927 - State script file to unix timeframe

Issue - State: open - Opened by CBroz1 6 months ago - 2 comments
Labels: enhancement, common

#926 - Deprecate use of env variables when loading config

Issue - State: open - Opened by CBroz1 6 months ago
Labels: enhancement, infrastructure

#925 - Quickfix for removal of old kachery tables

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#924 - Improper restriction of merge tables during delete in spikesortingv1

Issue - State: closed - Opened by samuelbray32 6 months ago
Labels: bug, spike sorting, merge

#923 - General-purporse key lookup tool(s) for buried primary keys

Issue - State: closed - Opened by CBroz1 6 months ago - 3 comments
Labels: enhancement, infrastructure

#922 - Check for entry in merge part table prior to insert

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#921 - Metric Curation Populate inhomogeneous shape for probe data

Issue - State: closed - Opened by rpswenson 6 months ago - 10 comments
Labels: spike sorting

#920 - Duplicate entries created in Merge table

Issue - State: closed - Opened by samuelbray32 6 months ago - 1 comment
Labels: bug, spike sorting, merge

#919 - Implementation of import config

Issue - State: closed - Opened by samuelbray32 6 months ago
Labels: enhancement, infrastructure

#918 - Kachery fixes

Pull Request - State: closed - Opened by samuelbray32 6 months ago

#917 - Recompute method in computed tables

Issue - State: open - Opened by lfrank 6 months ago - 3 comments
Labels: enhancement, infrastructure