Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#1116 - Revise datajoint import name

Pull Request - State: closed - Opened by CBroz1 17 days ago

#1115 - populate error due to upstream table change

Issue - State: closed - Opened by rpswenson 17 days ago - 2 comments

#1114 - Fix Curation primary key creation from spikesorting key

Pull Request - State: open - Opened by samuelbray32 17 days ago

#1113 - Proposal for tracking row-based provenance

Issue - State: open - Opened by rly 18 days ago - 2 comments
Labels: enhancement

#1112 - Add objects to analysis file before insert

Pull Request - State: closed - Opened by samuelbray32 18 days ago

#1111 - DLC model not getting trained

Issue - State: open - Opened by emreybroyles 19 days ago - 5 comments
Labels: bug

#1110 - AutomaticCuration.populate Query Syntax Error in spikesorting

Issue - State: open - Opened by emreybroyles 20 days ago - 2 comments
Labels: bug, spike sorting

#1109 - key improperly restricting during spike sorting recording populate

Issue - State: closed - Opened by rpswenson 21 days ago - 1 comment

#1108 - Adjust no-transact pop hashing mechanism

Pull Request - State: closed - Opened by CBroz1 21 days ago

#1107 - file size error in DLC pipeline

Issue - State: closed - Opened by MichaelCoulter 21 days ago - 3 comments

#1106 - Remove SessionGroup

Pull Request - State: closed - Opened by CBroz1 21 days ago

#1105 - `DLCModelSource` uses `fetch1` when restricting by a secondary key

Issue - State: open - Opened by CBroz1 22 days ago
Labels: bug, position

#1104 - Avoid creating copy of the original nwb file at insert

Issue - State: open - Opened by samuelbray32 22 days ago
Labels: enhancement, infrastructure, Database

#1103 - Fix #1101

Pull Request - State: closed - Opened by CBroz1 22 days ago

#1102 - Allow `populate` with secondary keys

Issue - State: open - Opened by CBroz1 23 days ago - 1 comment
Labels: enhancement

#1101 - Error when finding video

Issue - State: closed - Opened by rpswenson 23 days ago - 3 comments
Labels: position

#1100 - Fix #1098

Pull Request - State: closed - Opened by CBroz1 24 days ago

#1099 - Fix 1080

Pull Request - State: closed - Opened by CBroz1 24 days ago

#1098 - `DLCPoseEstimation` fails on integer epoch

Issue - State: closed - Opened by MichaelCoulter 24 days ago - 9 comments
Labels: bug, position

#1097 - Error deleting sort groups

Issue - State: closed - Opened by rpswenson 24 days ago - 6 comments

#1096 - Fix #1094

Pull Request - State: closed - Opened by CBroz1 24 days ago

#1095 - Dandi export fixes

Pull Request - State: open - Opened by samuelbray32 25 days ago

#1094 - Error when making sort groups

Issue - State: closed - Opened by rpswenson 25 days ago - 2 comments
Labels: bug, spike sorting

#1093 - Allow recompute via `_make_file` func

Pull Request - State: open - Opened by CBroz1 28 days ago - 1 comment

#1092 - Dandi export of nwb w/ external files

Issue - State: open - Opened by samuelbray32 28 days ago - 1 comment
Labels: infrastructure

#1091 - Add edge map parameter to track linearization

Pull Request - State: closed - Opened by edeno 28 days ago

#1089 - NaN handling in LFPBand

Pull Request - State: closed - Opened by shijiegu 29 days ago - 3 comments

#1088 - video_frame_ind not upsampled in TrodesPosV1

Issue - State: open - Opened by samuelbray32 29 days ago - 4 comments
Labels: bug, position

#1087 - Edited installs impact data provenance

Issue - State: open - Opened by CBroz1 29 days ago - 1 comment
Labels: Database

#1086 - Apply restrictions on parent tables in fetch_nwb

Pull Request - State: closed - Opened by samuelbray32 30 days ago - 4 comments

#1085 - Export process with non-nwb external files

Issue - State: open - Opened by samuelbray32 30 days ago - 1 comment
Labels: enhancement, infrastructure

#1084 - v0 Curation does not throw away rejected units in the fetched sorting

Issue - State: open - Opened by shijiegu about 1 month ago - 1 comment
Labels: spike sorting

#1083 - Prevent error from unitless spike group

Pull Request - State: closed - Opened by samuelbray32 about 1 month ago

#1082 - Error in UnitWaveformFeatures with sort with no units

Issue - State: closed - Opened by samuelbray32 about 1 month ago

#1081 - Bump dj dependency to 0.14.2

Pull Request - State: closed - Opened by CBroz1 about 1 month ago - 1 comment

#1080 - `_compute_isi_violation_fractions` returns a dict for each unit

Issue - State: closed - Opened by emreybroyles about 1 month ago - 8 comments
Labels: bug, spike sorting

#1079 - figurl-sortingview does not load/slow in loading

Issue - State: open - Opened by shijiegu about 1 month ago - 2 comments

#1078 - Add tests for spikesorting

Pull Request - State: closed - Opened by CBroz1 about 1 month ago

#1077 - `SpikeSortingOutput` calls non-existent method

Issue - State: closed - Opened by CBroz1 about 1 month ago - 1 comment
Labels: bug, spike sorting

#1076 - Add docstrings

Pull Request - State: closed - Opened by CBroz1 about 1 month ago

#1075 - Revise mixin structure to reflect table types

Issue - State: open - Opened by CBroz1 about 1 month ago
Labels: enhancement, infrastructure

#1074 - NWB ingestion fixes

Pull Request - State: open - Opened by samuelbray32 about 2 months ago

#1073 - Decode fixes

Pull Request - State: closed - Opened by samuelbray32 about 2 months ago

#1072 - fix fetch efficiency in insert_curation

Pull Request - State: closed - Opened by samuelbray32 about 2 months ago

#1071 - Fix fetch call

Issue - State: closed - Opened by samuelbray32 about 2 months ago

#1070 - Curation v0 fetching incorrectly

Issue - State: closed - Opened by samuelbray32 about 2 months ago
Labels: bug, spike sorting

#1069 - Spikesort artifact fixes

Pull Request - State: closed - Opened by samuelbray32 about 2 months ago - 1 comment

#1068 - Inconsistent parameter name in artifact util functions

Issue - State: closed - Opened by samuelbray32 about 2 months ago
Labels: bug, spike sorting

#1067 - Allow disable transaction for select populates

Pull Request - State: closed - Opened by CBroz1 about 2 months ago - 1 comment

#1066 - Ban tables in distance restrict bugfix

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1064 - Part table not caught by `delete_downstream_parts`

Issue - State: closed - Opened by MichaelCoulter about 2 months ago - 4 comments

#1063 - Add check threads util

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1062 - #1053 bugfix

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1061 - Remove `common_ripple`

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1060 - Spikesorting merge table calls undefined `fetch_spike_data`

Issue - State: closed - Opened by CBroz1 about 2 months ago - 1 comment
Labels: spike sorting

#1059 - `common_ripple` underused and misdeclared

Issue - State: closed - Opened by CBroz1 about 2 months ago - 1 comment
Labels: ripple, Database

#1058 - Sparse Waveforms from spikeinterface

Issue - State: open - Opened by samuelbray32 about 2 months ago - 1 comment
Labels: bug, decoding

#1057 - Replication tool

Pull Request - State: open - Opened by CBroz1 about 2 months ago

#1056 - Moseq Pipeline

Pull Request - State: open - Opened by samuelbray32 about 2 months ago - 1 comment

#1055 - Revise get_group_by_shank

Pull Request - State: closed - Opened by CBroz1 about 2 months ago - 3 comments

#1054 - get_group_by shank doesn't return value

Issue - State: closed - Opened by samuelbray32 about 2 months ago

#1053 - Reduce duplication 2

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1052 - Quick fix for parralel populate and spike unit naming

Pull Request - State: closed - Opened by samuelbray32 2 months ago

#1051 - Update CHANGELOG.md

Pull Request - State: closed - Opened by MichaelCoulter 2 months ago - 1 comment

#1050 - Reduce duplication 1

Pull Request - State: closed - Opened by CBroz1 2 months ago

#1049 - Object oriented approach to `dj_decoder_conversion.py`

Issue - State: open - Opened by CBroz1 2 months ago
Labels: enhancement, decoding

#1048 - Export updates

Pull Request - State: closed - Opened by CBroz1 2 months ago - 1 comment

#1047 - UnitWaveformFeaturesGroup Integrity

Issue - State: closed - Opened by samuelbray32 2 months ago
Labels: decoding

#1046 - quick fix for issue 1045

Pull Request - State: closed - Opened by MichaelCoulter 2 months ago - 2 comments

#1045 - LFPBandV1 fetches interval list of inverted shape

Issue - State: closed - Opened by CBroz1 2 months ago - 5 comments

#1044 - No enforced integrity between geometry in `Probe` table and the spikesorting geometries used

Issue - State: open - Opened by samuelbray32 2 months ago
Labels: bug, common, NWB ingestion

#1043 - Distribute processes across gpu devices during populate calls

Issue - State: closed - Opened by samuelbray32 2 months ago - 2 comments
Labels: enhancement, decoding

#1042 - Source key in PositionSource is hard coded to trodes

Issue - State: open - Opened by samuelbray32 2 months ago
Labels: enhancement, common, NWB ingestion

#1041 - Failed linking of camera defined by config and TaskEpoch during insert_session

Issue - State: open - Opened by samuelbray32 2 months ago - 1 comment
Labels: bug, common, NWB ingestion

#1040 - Can't define a new probe type using a config in Probe.insert_nwbfile

Issue - State: open - Opened by samuelbray32 2 months ago
Labels: enhancement, common, NWB ingestion

#1039 - Set `sparse=False` during waveform extraction

Pull Request - State: closed - Opened by khl02007 3 months ago

#1038 - SpikeSortingRecording whitens data or not.

Issue - State: open - Opened by shijiegu 3 months ago - 2 comments

#1037 - Conservative error in nightly cleanup misses orphans

Issue - State: open - Opened by samuelbray32 3 months ago
Labels: common

#1036 - MetricCuration populate problem

Issue - State: closed - Opened by denissemorales 3 months ago - 1 comment

#1035 - Periph table fallback on TableChain for experimenter summary

Pull Request - State: closed - Opened by CBroz1 3 months ago - 5 comments

#1034 - Bugfixes from 870

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1033 - Fix interpolation of nans in decoding position

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1032 - Interpolation of nan values in PositionGroup

Issue - State: closed - Opened by samuelbray32 3 months ago
Labels: bug, decoding, position

#1031 - `ValueError` on non-spy table for `_get_exp_summary()`

Issue - State: closed - Opened by MichaelCoulter 3 months ago - 2 comments

#1030 - Table Metadata Lock by long populate calls

Issue - State: open - Opened by samuelbray32 3 months ago - 4 comments
Labels: bug, common, infrastructure

#1029 - Re-organize docs

Pull Request - State: closed - Opened by CBroz1 3 months ago - 3 comments

#1028 - Citation issues

Issue - State: closed - Opened by CBroz1 3 months ago - 1 comment

#1027 - Spike Unit Annotation

Pull Request - State: closed - Opened by samuelbray32 3 months ago - 3 comments

#1026 - Group integrity

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1025 - Remove `SessionGroup`?

Issue - State: open - Opened by CBroz1 3 months ago - 2 comments

#1024 - Disable AnalysisFile logging

Pull Request - State: closed - Opened by CBroz1 3 months ago - 2 comments

#1023 - #1016 - Allow `ModuleNotFoundError`

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1022 - PositionGroup integrity

Issue - State: closed - Opened by samuelbray32 3 months ago - 2 comments
Labels: decoding, position

#1021 - #980

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1020 - AnalysisNwbfileLog primary key character length prevents insertion

Issue - State: closed - Opened by jguides 3 months ago - 1 comment

#1019 - Position vs. Derived Position - where to Merge

Issue - State: closed - Opened by CBroz1 3 months ago
Labels: wontfix

#1017 - Merge table efficiency

Pull Request - State: closed - Opened by samuelbray32 3 months ago