Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LorenFrankLab/spyglass issues and pull requests

#1175 - `get_djuser_name` error specificity

Issue - State: open - Opened by CBroz1 27 days ago

#1174 - `VideoMaker` trodes fixes and resume from fail

Pull Request - State: open - Opened by CBroz1 27 days ago

#1173 - First attribute read as log_export in fetch_nwb

Issue - State: open - Opened by samuelbray32 28 days ago - 1 comment
Labels: bug, common

#1172 - No transact insert v0 lfp

Pull Request - State: closed - Opened by samuelbray32 about 1 month ago

#1171 - Avoid transactions in CommonLFP

Issue - State: closed - Opened by samuelbray32 about 1 month ago
Labels: enhancement, LFP, infrastructure

#1170 - Export failure from retriction graph whith multiple restrictions to the same leaf

Issue - State: open - Opened by samuelbray32 about 1 month ago - 2 comments
Labels: bug, common

#1169 - Allow python <3.13 and remove numpy pin

Pull Request - State: closed - Opened by edeno about 1 month ago

#1168 - `DLCPosVideo`: Use provided epoch, multithread matplotlib

Pull Request - State: closed - Opened by CBroz1 about 1 month ago - 1 comment

#1167 - Run pytests on open PR

Issue - State: open - Opened by CBroz1 about 1 month ago - 1 comment

#1166 - Delete seems to have left some residual trace. Cannot reinsert data when old data is deleted.

Issue - State: closed - Opened by shijiegu about 1 month ago - 1 comment
Labels: invalid

#1165 - Fix tests

Pull Request - State: closed - Opened by CBroz1 about 1 month ago

#1164 - Expand Export logging abilities

Pull Request - State: open - Opened by CBroz1 about 2 months ago - 8 comments

#1163 - `SpyglassMixinPart` rejects restrictions of self on delete

Issue - State: open - Opened by CBroz1 about 2 months ago - 2 comments

#1162 - Fix topological sort logic

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1161 - DJ's `topo_sort` mechanisms not interchangable in `RestrGraph`

Issue - State: closed - Opened by rpswenson about 2 months ago - 7 comments
Labels: bug, infrastructure

#1160 - `DLCPosVideo` fails for non-existent interval

Issue - State: closed - Opened by rpswenson about 2 months ago - 4 comments

#1159 - `get_spiking_v1_merge_ids` invalid restriction

Issue - State: open - Opened by CBroz1 about 2 months ago
Labels: bug, spike sorting

#1158 - `DecodingParameters.insert_default` errors on new declaration

Issue - State: open - Opened by CBroz1 about 2 months ago

#1157 - Model inclusion of track graph in Decoding notebooks

Issue - State: open - Opened by CBroz1 about 2 months ago - 3 comments
Labels: documentation, enhancement, decoding

#1156 - `make_video` fails with opencv

Issue - State: open - Opened by emreybroyles about 2 months ago - 9 comments
Labels: question, position

#1155 - Add pytests for decoding pipeline

Pull Request - State: open - Opened by CBroz1 about 2 months ago

#1154 - Explicit handling of no-spikes during curation

Issue - State: open - Opened by CBroz1 about 2 months ago
Labels: spike sorting

#1153 - Remove mambaforge from tests

Pull Request - State: closed - Opened by edeno about 2 months ago

#1152 - Remove stored hashes from tests

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1151 - Additional export fixes

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1150 - DLC `make_video` minor fixes

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1149 - Fix test badge

Pull Request - State: closed - Opened by edeno about 2 months ago - 1 comment

#1148 - Quickfix: typo in adding objects to nwb

Pull Request - State: closed - Opened by samuelbray32 about 2 months ago

#1147 - Allow installation of spyglass from github in docker

Issue - State: open - Opened by samuelbray32 about 2 months ago
Labels: enhancement, infrastructure

#1146 - SQL syntax issue with "pose_eval_result" in DLC pipeline

Issue - State: closed - Opened by emreybroyles about 2 months ago - 1 comment
Labels: question, position

#1145 - #1138, #1139

Pull Request - State: closed - Opened by CBroz1 about 2 months ago - 1 comment

#1144 - Calls in the export process that don't trigger logging

Issue - State: open - Opened by samuelbray32 about 2 months ago - 2 comments
Labels: enhancement, merge, infrastructure

#1143 - Update UsingNWB.md to fix task location in NWB file

Pull Request - State: closed - Opened by bendichter about 2 months ago - 1 comment

#1142 - NWB mapping for session seems wrong

Issue - State: closed - Opened by bendichter about 2 months ago

#1141 - Update UsingNWB.md to fix typo

Pull Request - State: closed - Opened by bendichter about 2 months ago

#1140 - Update README.md to fix link

Pull Request - State: closed - Opened by bendichter about 2 months ago

#1139 - Docs: ORM?

Issue - State: closed - Opened by bendichter about 2 months ago - 4 comments

#1138 - dead link to mamba docs

Issue - State: closed - Opened by bendichter about 2 months ago

#1137 - Long distance restr fix

Pull Request - State: closed - Opened by CBroz1 about 2 months ago

#1136 - Long distance restrictions fail to cascade through Merge tables

Issue - State: closed - Opened by CBroz1 about 2 months ago - 2 comments
Labels: merge

#1135 - Get AttributeError when try to delete entry from TrackGraph

Issue - State: closed - Opened by ChenyanLiu7 2 months ago - 1 comment
Labels: duplicate

#1134 - Test out zarr back-end for NWB files

Issue - State: open - Opened by lfrank 2 months ago - 1 comment

#1133 - Spikes sorting recording timestamps starting from 0

Issue - State: open - Opened by samuelbray32 2 months ago
Labels: bug, spike sorting

#1132 - Fix waveform params in metric curation

Pull Request - State: closed - Opened by edeno 2 months ago

#1131 - Add password setting instruction to setup notebook

Pull Request - State: closed - Opened by CBroz1 2 months ago - 1 comment

#1130 - Missing schema declaration permission for existing schema

Issue - State: closed - Opened by ashleysosa 2 months ago - 4 comments
Labels: Database

#1129 - Export of selected table entries and associated files to a different database / spyglass install

Issue - State: open - Opened by lfrank 2 months ago - 2 comments
Labels: enhancement, infrastructure

#1128 - Add password setting instructions to setup tutorial

Issue - State: closed - Opened by CBroz1 2 months ago

#1127 - waveform extractor issue with keyword 'sparse'

Issue - State: closed - Opened by rpswenson 2 months ago - 1 comment
Labels: bug, spike sorting

#1126 - Switch to or logic when multiple merge ids in restriction

Pull Request - State: closed - Opened by samuelbray32 2 months ago

#1125 - speed up electrodes import

Pull Request - State: closed - Opened by magland 2 months ago - 2 comments

#1124 - super_delete() does not clean up raw and analysis files

Issue - State: closed - Opened by magland 2 months ago - 3 comments

#1123 - Update needed in `test_position_interval_no_transaction`

Issue - State: closed - Opened by samuelbray32 2 months ago
Labels: bug

#1122 - BUG: undefined variable nwb_file_name

Issue - State: closed - Opened by magland 2 months ago

#1121 - redundant time-consuming insertion of electrodes during import

Issue - State: closed - Opened by magland 2 months ago - 8 comments

#1120 - Fix null config_tasks value

Pull Request - State: closed - Opened by samuelbray32 2 months ago

#1119 - config_tasks is None

Issue - State: closed - Opened by magland 2 months ago - 4 comments

#1117 - Convert string config settings to bool

Pull Request - State: closed - Opened by samuelbray32 2 months ago - 4 comments
Labels: infrastructure

#1116 - Revise datajoint import name

Pull Request - State: closed - Opened by CBroz1 2 months ago

#1115 - populate error due to upstream table change

Issue - State: closed - Opened by rpswenson 2 months ago - 2 comments

#1114 - Fix Curation primary key creation from spikesorting key

Pull Request - State: closed - Opened by samuelbray32 2 months ago

#1113 - Proposal for tracking row-based provenance

Issue - State: open - Opened by rly 2 months ago - 2 comments
Labels: enhancement

#1112 - Add objects to analysis file before insert

Pull Request - State: closed - Opened by samuelbray32 2 months ago

#1111 - DLC model not getting trained

Issue - State: closed - Opened by emreybroyles 2 months ago - 8 comments
Labels: bug

#1110 - AutomaticCuration.populate Query Syntax Error in spikesorting

Issue - State: closed - Opened by emreybroyles 3 months ago - 2 comments
Labels: bug, spike sorting

#1109 - key improperly restricting during spike sorting recording populate

Issue - State: closed - Opened by rpswenson 3 months ago - 1 comment

#1108 - Adjust no-transact pop hashing mechanism

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1107 - file size error in DLC pipeline

Issue - State: closed - Opened by MichaelCoulter 3 months ago - 13 comments

#1106 - Remove SessionGroup

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1105 - `DLCModelSource` uses `fetch1` when restricting by a secondary key

Issue - State: open - Opened by CBroz1 3 months ago
Labels: bug, position

#1104 - Avoid creating copy of the original nwb file at insert

Issue - State: open - Opened by samuelbray32 3 months ago
Labels: enhancement, infrastructure, Database

#1103 - Fix #1101

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1102 - Allow `populate` with secondary keys

Issue - State: open - Opened by CBroz1 3 months ago - 1 comment
Labels: enhancement

#1101 - Error when finding video

Issue - State: closed - Opened by rpswenson 3 months ago - 3 comments
Labels: position

#1100 - Fix #1098

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1099 - Fix 1080

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1098 - `DLCPoseEstimation` fails on integer epoch

Issue - State: closed - Opened by MichaelCoulter 3 months ago - 9 comments
Labels: bug, position

#1097 - Error deleting sort groups

Issue - State: closed - Opened by rpswenson 3 months ago - 6 comments

#1096 - Fix #1094

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1095 - Dandi export fixes

Pull Request - State: closed - Opened by samuelbray32 3 months ago
Labels: enhancement

#1094 - Error when making sort groups

Issue - State: closed - Opened by rpswenson 3 months ago - 2 comments
Labels: bug, spike sorting

#1093 - Allow recompute via `_make_file` func

Pull Request - State: open - Opened by CBroz1 3 months ago - 1 comment
Labels: enhancement

#1092 - Dandi export of nwb w/ external files

Issue - State: closed - Opened by samuelbray32 3 months ago - 2 comments
Labels: infrastructure

#1091 - Add edge map parameter to track linearization

Pull Request - State: closed - Opened by edeno 3 months ago

#1090 - Update common_ephys.py to handle nan in from raw data timestamps

Pull Request - State: closed - Opened by shijiegu 3 months ago

#1089 - NaN handling in LFPBand

Pull Request - State: closed - Opened by shijiegu 3 months ago - 3 comments

#1088 - video_frame_ind not upsampled in TrodesPosV1

Issue - State: open - Opened by samuelbray32 3 months ago - 4 comments
Labels: bug, position

#1087 - Edited installs impact data provenance

Issue - State: open - Opened by CBroz1 3 months ago - 1 comment
Labels: Database

#1086 - Apply restrictions on parent tables in fetch_nwb

Pull Request - State: closed - Opened by samuelbray32 3 months ago - 4 comments

#1085 - Export process with non-nwb external files

Issue - State: open - Opened by samuelbray32 3 months ago - 1 comment
Labels: enhancement, infrastructure

#1084 - v0 Curation does not throw away rejected units in the fetched sorting

Issue - State: open - Opened by shijiegu 3 months ago - 1 comment
Labels: spike sorting

#1083 - Prevent error from unitless spike group

Pull Request - State: closed - Opened by samuelbray32 3 months ago

#1081 - Bump dj dependency to 0.14.2

Pull Request - State: closed - Opened by CBroz1 3 months ago - 1 comment

#1080 - `_compute_isi_violation_fractions` returns a dict for each unit

Issue - State: closed - Opened by emreybroyles 3 months ago - 8 comments
Labels: bug, spike sorting

#1079 - figurl-sortingview does not load/slow in loading

Issue - State: open - Opened by shijiegu 3 months ago - 2 comments

#1078 - Add tests for spikesorting

Pull Request - State: closed - Opened by CBroz1 3 months ago

#1077 - `SpikeSortingOutput` calls non-existent method

Issue - State: closed - Opened by CBroz1 3 months ago - 1 comment
Labels: bug, spike sorting

#1076 - Add docstrings

Pull Request - State: closed - Opened by CBroz1 3 months ago