LondonBiofoundry/basicsynbio issues and pull requests

#249 - Bump cryptography from 39.0.1 to 43.0.1

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#248 - Bump certifi from 2022.12.7 to 2024.7.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#247 - Bump urllib3 from 1.25.10 to 1.26.19

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#246 - Bump tornado from 6.0.4 to 6.4.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#245 - Bump requests from 2.24.0 to 2.32.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#244 - Bump jinja2 from 2.11.3 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#243 - Bump tqdm from 4.48.2 to 4.66.3

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#242 - Bump dnspython from 1.16.0 to 2.6.1

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#241 - Bump idna from 2.10 to 3.7

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#240 - Bump pymongo from 3.11.2 to 4.6.3

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#239 - Bump pillow from 9.3.0 to 10.3.0

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#238 - Bump black from 20.8b1 to 24.3.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#237 - Bump cryptography from 39.0.1 to 42.0.4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#236 - Bump cryptography from 39.0.1 to 42.0.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#235 - Bump cryptography from 39.0.1 to 42.0.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#234 - Bump pillow from 9.3.0 to 10.2.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#233 - Bump jinja2 from 2.11.3 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#232 - Bump cryptography from 39.0.1 to 41.0.6

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#231 - Bump urllib3 from 1.25.10 to 1.26.18

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#230 - Bump pillow from 9.3.0 to 10.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#229 - Bump urllib3 from 1.25.10 to 1.26.17

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#228 - Bump cryptography from 39.0.1 to 41.0.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#227 - Bump reportlab from 3.5.59 to 3.6.13

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#226 - Bump tornado from 6.0.4 to 6.3.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#225 - Bump cryptography from 39.0.1 to 41.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#224 - Bump certifi from 2022.12.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#223 - Bump pygments from 2.7.4 to 2.15.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#222 - Bump cryptography from 39.0.1 to 41.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#221 - Bump pypdf2 from 1.27.5 to 1.27.9

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#220 - Bump cryptography from 39.0.1 to 41.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#219 - Bump tornado from 6.0.4 to 6.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#218 - Bump requests from 2.24.0 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#217 - Bump ipython from 7.31.1 to 8.10.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#216 - Bump cryptography from 3.3.2 to 39.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#215 - Bump certifi from 2020.6.20 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#214 - Bump jupyter-core from 4.6.3 to 4.11.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#213 - Bump pillow from 9.0.1 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#212 - aliquot BASIC SEVA collection

Pull Request - State: closed - Opened by hainesm6 about 2 years ago

#211 - Bump nbconvert from 5.6.1 to 6.5.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#210 - Bump nbconvert from 5.6.1 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#209 - Bump mistune from 0.8.4 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#208 - Update selected collections to most relevant version numbers

Issue - State: open - Opened by hainesm6 over 2 years ago
Labels: documentation

#207 - Bump lxml from 4.6.5 to 4.9.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#206 - Bump ujson from 1.35 to 5.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#205 - Bump numpy from 1.21.0 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#204 - Bump notebook from 6.1.5 to 6.4.12

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#203 - Bump ujson from 1.35 to 5.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#202 - Bump pypdf2 from 1.26.0 to 1.27.5

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#201 - Bump notebook from 6.1.5 to 6.4.10

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#200 - save ipynb from previous commit

Pull Request - State: closed - Opened by hainesm6 over 2 years ago

#199 - add new version (2.0) of BASIC_SEVA_PARTS

Pull Request - State: closed - Opened by hainesm6 over 2 years ago

#198 - analyse cfu data for seva tet

Pull Request - State: closed - Opened by hainesm6 over 2 years ago

#197 - Update BASIC_SEVA_PARTS collection to v2.0

Issue - State: closed - Opened by hainesm6 over 2 years ago
Labels: bug

#196 - Bump pillow from 9.0.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#195 - Gen alignments

Pull Request - State: closed - Opened by hainesm6 over 2 years ago

#194 - prepped 37_pKD46 contains point mutation in LMS linker

Issue - State: closed - Opened by hainesm6 over 2 years ago - 1 comment

#193 - BASIC_SEVA_69.10 troubleshooting

Issue - State: closed - Opened by hainesm6 over 2 years ago - 3 comments

#192 - Sequence prepped plasmids

Issue - State: closed - Opened by hainesm6 over 2 years ago - 4 comments

#191 - Bump ipython from 7.17.0 to 7.31.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#190 - Consistent versioning across PartLinkerCollections

Issue - State: closed - Opened by hainesm6 almost 3 years ago - 1 comment
Labels: good first issue, invalid

#189 - Bump pillow from 8.2.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#188 - correct some typos in manual instructions

Pull Request - State: closed - Opened by hainesm6 almost 3 years ago

#187 - Part collections

Pull Request - State: closed - Opened by hainesm6 almost 3 years ago

#186 - Default linker plate

Pull Request - State: closed - Opened by Benedict-Carling almost 3 years ago

#185 - typos in exported manual instructions

Issue - State: closed - Opened by hainesm6 almost 3 years ago

#184 - Expand BasicLinker.seq property to raise exception depending on length

Issue - State: open - Opened by hainesm6 almost 3 years ago
Labels: enhancement

#183 - Bump lxml from 4.6.3 to 4.6.5

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#182 - Default linker plate for setting up clips with echo

Issue - State: closed - Opened by hainesm6 almost 3 years ago

#181 - add objects describining linkers in plates

Pull Request - State: closed - Opened by hainesm6 almost 3 years ago

#180 - Ben/echo clips

Pull Request - State: closed - Opened by Benedict-Carling almost 3 years ago

#179 - Add default linker 384-well plate

Issue - State: closed - Opened by hainesm6 almost 3 years ago - 1 comment

#178 - Send Benedict example survey.csv file

Issue - State: closed - Opened by hainesm6 almost 3 years ago - 1 comment

#177 - Add useful tools

Issue - State: open - Opened by hainesm6 almost 3 years ago
Labels: enhancement

#176 - Generate build instructions

Pull Request - State: closed - Opened by hainesm6 almost 3 years ago

#175 - How to present remaining PartLinker collections?

Issue - State: closed - Opened by hainesm6 about 3 years ago

#174 - Upadate `PartLinker` collections

Issue - State: closed - Opened by hainesm6 about 3 years ago - 1 comment

#173 - Update docs

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#172 - Consider automating publishing of docs via Actions

Issue - State: open - Opened by hainesm6 about 3 years ago
Labels: documentation

#171 - GitHub actions

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#170 - Export clip reaction setup instructions for the echo

Issue - State: closed - Opened by hainesm6 about 3 years ago

#169 - Update documentation to explain build_digest()

Issue - State: closed - Opened by hainesm6 about 3 years ago - 1 comment
Labels: documentation

#168 - add functionality to digest all assemblies in build with bespoke REs

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#167 - Export data detailing sizes of assembled BASIC parts

Issue - State: closed - Opened by hainesm6 about 3 years ago

#166 - migrate from BasicPart.concentration() to BasicPart.clip_mass()

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#165 - Bump babel from 2.8.0 to 2.9.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#164 - Change clip reaction table

Issue - State: closed - Opened by hainesm6 about 3 years ago
Labels: good first issue

#163 - Update annotations library for "incorrect" modules

Issue - State: closed - Opened by hainesm6 about 3 years ago - 1 comment

#162 - really fix broken link this time

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#161 - fix broken link in docs

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#160 - update documentation for working with linker oligonucleotides

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#159 - Update pdf instructions

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#158 - Update pdf instructions

Issue - State: closed - Opened by hainesm6 about 3 years ago

#157 - Bump pillow from 8.2.0 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#156 - Exports CSV's not exposed to main package

Issue - State: open - Opened by Benedict-Carling about 3 years ago

#155 - adjust BSEVA1.0 build instructions for TS cassette cloning

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#154 - Generate materials for BASIC SEVA v1.0 build

Issue - State: closed - Opened by hainesm6 about 3 years ago

#153 - Assemble BS_x7x_TS construct

Issue - State: closed - Opened by hainesm6 about 3 years ago - 1 comment

#152 - Design sequencing primers for initial mods

Issue - State: closed - Opened by hainesm6 about 3 years ago - 2 comments

#151 - Addgene collection

Pull Request - State: closed - Opened by hainesm6 about 3 years ago

#150 - Build and validate backbone collection for addgene submission

Issue - State: closed - Opened by hainesm6 about 3 years ago

GitHub / LondonBiofoundry/basicsynbio issues and pull requests