Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / LinguaPhylo/linguaPhylo issues and pull requests

#443 - simulate method should not log

Issue - State: closed - Opened by walterxie 10 months ago
Labels: bug

#442 - OutputSystem bug to handle the output dir

Issue - State: closed - Opened by walterxie 10 months ago - 1 comment
Labels: bug

#440 - new interface TextFileFormatted and improve SPI

Pull Request - State: closed - Opened by walterxie 10 months ago

#439 - Merge pull request #436 from LinguaPhylo/loader

Pull Request - State: closed - Opened by walterxie 10 months ago - 1 comment

#438 - Add SLPhy command argument to specify which random var(s) not logged

Issue - State: closed - Opened by walterxie 10 months ago
Labels: enhancement

#437 - new interface for writing values to a file

Issue - State: closed - Opened by walterxie 10 months ago - 1 comment
Labels: enhancement, critical change

#436 - Improve SPI

Pull Request - State: closed - Opened by walterxie 12 months ago - 1 comment

#435 - Recover unit test after significant change in SPI

Issue - State: closed - Opened by walterxie 12 months ago - 1 comment
Labels: enhancement

#434 - GUI is stuck with large alignment

Issue - State: open - Opened by walterxie 12 months ago
Labels: enhancement

#433 - The design of FileConfig and SimulatorListener needs to change

Issue - State: open - Opened by walterxie 12 months ago
Labels: enhancement

#432 - OutputSystem bug FileNotFoundException

Issue - State: closed - Opened by walterxie 12 months ago
Labels: bug

#431 - LPhyValueFormatter SPI not working in LPhyBEAST

Issue - State: closed - Opened by walterxie 12 months ago - 1 comment
Labels: enhancement

#430 - move CanonicalCodeBuilder to the core

Issue - State: closed - Opened by walterxie 12 months ago
Labels: enhancement

#429 - Improve the simulator code

Issue - State: closed - Opened by walterxie 12 months ago
Labels: enhancement

#428 - The module not loading properly in the Gradle tests after splitting core and base

Issue - State: closed - Opened by walterxie 12 months ago - 1 comment
Labels: bug

#427 - Exception when loading example jcCoal.lphy

Issue - State: closed - Opened by walterxie 12 months ago
Labels: bug

#426 - Prepare release 1.5.0

Issue - State: closed - Opened by walterxie 12 months ago - 1 comment

#425 - GeneratorInfo annotation is not found

Issue - State: closed - Opened by walterxie 12 months ago
Labels: bug

#424 - Register the missing functions in the core

Issue - State: closed - Opened by walterxie 12 months ago
Labels: bug

#423 - The position of replicates is incorrectly changed after the script is rendered

Issue - State: closed - Opened by walterxie 12 months ago - 1 comment
Labels: bug

#422 - SLPhy script not working

Issue - State: closed - Opened by walterxie 12 months ago
Labels: bug

#421 - codeString bug for taxa(names=1:n)

Issue - State: closed - Opened by walterxie almost 1 year ago - 1 comment
Labels: bug

#420 - Introduce macro language to lphy script

Issue - State: closed - Opened by walterxie almost 1 year ago
Labels: enhancement, critical change

#419 - readTree function

Issue - State: open - Opened by walterxie about 1 year ago - 1 comment
Labels: enhancement

#418 - SpeciesTaxa has wrong view in studio

Issue - State: closed - Opened by walterxie about 1 year ago
Labels: bug

#417 - Parser

Pull Request - State: closed - Opened by walterxie about 1 year ago - 1 comment
Labels: critical change

#416 - Create Table object to be value of Table value

Issue - State: closed - Opened by walterxie about 1 year ago - 1 comment
Labels: enhancement

#415 - Creating taxa and set dates from TableValue returned by readDelim

Issue - State: closed - Opened by walterxie about 1 year ago
Labels: enhancement

#414 - ElementWise2ArgsTest.test1DPlus2D test should not look for lphy.base.spi.LPhyBaseImpl

Issue - State: closed - Opened by walterxie about 1 year ago - 2 comments
Labels: bug

#413 - LPhy doc not show parameters are optional

Issue - State: closed - Opened by walterxie about 1 year ago
Labels: documentation, enhancement

#412 - removeTaxa function

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement

#411 - CharSet parsing is incorrect

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: bug

#410 - investigate to use Conda for the release

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#409 - ReadDelim function

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement

#408 - Linux: lphystudio script cannot resolve the working dir

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: bug

#407 - Layering From Sources is buggy

Issue - State: open - Opened by walterxie over 1 year ago
Labels: bug

#406 - Implement language models

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#405 - cannot have a method call to itself when data clamping

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: bug

#404 - Rescue the branch 1.4

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: bug

#403 - Prepare release 1.4.4

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments

#402 - Installer's installing path issue

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments
Labels: wontfix

#401 - Use Preferences instead of setter in AlignmentLog

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#400 - Refactoring and merge SPI and Loaders

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement, critical change

#399 - Create SPI for logging simulation results

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement

#398 - Remove "_true" postfix in the file

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: bug

#396 - Remove SequenceType SPI

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments
Labels: wontfix

#395 - Make Loaders using SPI

Issue - State: closed - Opened by walterxie over 1 year ago - 4 comments
Labels: wontfix

#394 - Null Id in CompoundVectorValue when sampling

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments
Labels: bug

#393 - Sampler should use REPL not GraphicalLPhyParser

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement

#392 - Release 1.4.3

Issue - State: closed - Opened by walterxie over 1 year ago

#391 - Posterior equation should use different letters for product indexing

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#390 - Correct vector index in Narrative

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: bug

#389 - P(null|....) in data clamping #385

Pull Request - State: closed - Opened by walterxie over 1 year ago

#388 - Merge Narrative to lphy.core.model

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: dependencies

#387 - Move ExpressionNode to lphy.core.model

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: dependencies

#386 - Logging deterministic stuff

Issue - State: open - Opened by bredelings over 1 year ago - 1 comment
Labels: enhancement

#385 - Narrative says Pr(null|....)

Issue - State: closed - Opened by bredelings over 1 year ago - 4 comments
Labels: bug

#384 - Untangle cyclic dependencies

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: dependencies, critical change

#383 - Use singular names for java packages

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement, critical change

#382 - Create lphy-io subproject

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments
Labels: dependencies

#381 - Unique should use T[]

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: bug

#380 - Document each module and java packages

Issue - State: open - Opened by walterxie over 1 year ago - 1 comment
Labels: documentation

#379 - Move doc and codebuilder from lphy.core to studio module

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: dependencies

#378 - Move logger package to the higher-level module

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments
Labels: dependencies

#377 - Move layeredgraph from lphy.core to studio module

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: dependencies

#376 - Lphy.base

Pull Request - State: closed - Opened by walterxie over 1 year ago

#375 - Gradle (ServiceLoader) problem to load SPI during tests

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment

#374 - Implement "replicates" for functions

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#373 - Release 1.4.2

Issue - State: closed - Opened by walterxie over 1 year ago

#372 - Improve parser grammar and the implementation of LPhyMetaParser

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments
Labels: enhancement, critical change

#371 - Explain the behaviours of basic logical or calculation operators and vectorisation

Issue - State: open - Opened by walterxie over 1 year ago
Labels: documentation

#370 - suppress unarmed argument in graphic model

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#369 - Add BooleanArray2DEditor

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement

#368 - rename lphy.core.LPhyParser

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: enhancement

#367 - Add JUnit test to ElementWise1Args and ElementWise2Args

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#366 - vector or array should be immutable

Issue - State: open - Opened by walterxie over 1 year ago
Labels: enhancement

#365 - 2d array indexing

Issue - State: open - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement

#364 - Extract vectorMatch from ParserUtils

Issue - State: open - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement, critical change

#363 - Refactor ElementWise2Args

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: enhancement

#362 - change logical operation from BinaryOperator to BiFunction

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: enhancement

#361 - Array2DValue toString Exception

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: bug

#360 - add product(array[]) function

Issue - State: closed - Opened by walterxie over 1 year ago - 4 comments
Labels: enhancement

#359 - add isnull function

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: invalid

#358 - add ifelse function

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: enhancement

#357 - Merge data and model in ANTRL

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement, critical change

#355 - Categorical generator should be under parametric distribution in docs

Issue - State: open - Opened by kche309 over 1 year ago
Labels: documentation

#354 - LPhy Studio console should default to model panel

Issue - State: closed - Opened by kche309 over 1 year ago
Labels: enhancement

#353 - Allow empty vector

Issue - State: open - Opened by walterxie over 1 year ago - 9 comments
Labels: enhancement, critical change

#351 - Add option in preferences for hiding toolbar

Issue - State: closed - Opened by kche309 over 1 year ago
Labels: enhancement

#350 - replicates should >= 0

Issue - State: closed - Opened by walterxie over 1 year ago - 3 comments
Labels: enhancement, critical change

#349 - Model in the console is inconsistent with model panel and narratives

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: bug, duplicate

#348 - Add hyper prior model

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement

#347 - Document ANTLR grammar

Issue - State: closed - Opened by walterxie over 1 year ago - 2 comments
Labels: documentation

#346 - Improve IID err message

Issue - State: closed - Opened by walterxie over 1 year ago
Labels: enhancement

#345 - Cannot use build-in function in model

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: bug

#344 - Add hyperprior example

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: enhancement