Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / LUMC/pytest-workflow issues and pull requests
#198 - pytest-workflow crashes if it finds an empty yml file
Issue -
State: open - Opened by Redmar-van-den-Berg 19 days ago
#197 - Fix unbound local variable error
Pull Request -
State: closed - Opened by jdidion about 1 month ago
- 1 comment
#196 - Feature request - making custom tests interoperable with `@pytest.mark.parametrize`
Issue -
State: open - Opened by theJasonFan about 2 months ago
- 2 comments
#195 - Feature request: Only run assertions (--skip-command?)
Issue -
State: closed - Opened by stianlagstad about 2 months ago
- 2 comments
#194 - add metadata field for custom tests
Pull Request -
State: open - Opened by sstrong99 3 months ago
- 12 comments
#193 - Add a pytest-workflow generate command line function
Issue -
State: open - Opened by rhpvorderman 4 months ago
- 3 comments
#192 - Release 2.1.0
Pull Request -
State: closed - Opened by rhpvorderman 4 months ago
#191 - Release 2.1.0
Issue -
State: closed - Opened by rhpvorderman 4 months ago
#190 - Add 3.12 python support, drop 3.7 support
Pull Request -
State: closed - Opened by rhpvorderman 4 months ago
#189 - Make pytest_collect_file() compatible with pytest 8.1+
Pull Request -
State: closed - Opened by JAlvarezJarreta 4 months ago
- 5 comments
#188 - Feature request: Allow wildcard in path
Issue -
State: closed - Opened by stianlagstad 7 months ago
- 3 comments
#187 - how to customize steps before each workflow test
Issue -
State: open - Opened by anoronh4 10 months ago
- 11 comments
#186 - is it possible to run pytest and only run non-pytest-workflow tests
Issue -
State: closed - Opened by sstrong99 10 months ago
- 3 comments
#185 - option to disable copying of project directory
Issue -
State: closed - Opened by ahvigil 11 months ago
- 1 comment
#184 - Add hook for custom tests in test yaml
Issue -
State: open - Opened by sstrong99 11 months ago
- 5 comments
#183 - example implementation for fail_if_unknown
Pull Request -
State: closed - Opened by sstrong99 11 months ago
- 1 comment
#182 - feature request: fail if any unknown files exist
Issue -
State: open - Opened by sstrong99 11 months ago
- 9 comments
#181 - collected items
Issue -
State: closed - Opened by lihaicheng7003 11 months ago
- 2 comments
#180 - allow wildcard matching for file paths
Issue -
State: closed - Opened by sstrong99 11 months ago
- 2 comments
#179 - Feature request: Add something like `must_match_file` in addition to `md5sum`
Issue -
State: open - Opened by stianlagstad about 1 year ago
- 3 comments
#178 - Use xopen throughout the code
Issue -
State: open - Opened by rhpvorderman about 1 year ago
#177 - Add extract_md5sum check
Pull Request -
State: closed - Opened by wholtz about 1 year ago
- 3 comments
#176 - Optionally Re-run the tests but not the workflow to help develop tests
Issue -
State: open - Opened by yfarjoun about 1 year ago
- 5 comments
Labels: Accepted feature
#175 - add file diffing
Pull Request -
State: closed - Opened by ahvigil about 1 year ago
- 6 comments
#174 - Rerun last failed workflows in same tmp directory?
Issue -
State: open - Opened by glormph over 1 year ago
- 6 comments
#173 - bioconda package is outdated
Issue -
State: closed - Opened by stevekm over 1 year ago
- 2 comments
#172 - Document test discovery naming conventions
Pull Request -
State: closed - Opened by wholtz over 1 year ago
- 2 comments
#171 - Release 2.0.1
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#170 - Release 2.0.1
Issue -
State: closed - Opened by rhpvorderman over 1 year ago
#169 - Functional tests for nextflow
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#168 - Fix crash when stderr bytes is not properly not aligned with the encoding
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#167 - In rare cases, pytest-workflow crashes on log files with special characters
Issue -
State: closed - Opened by Redmar-van-den-Berg over 1 year ago
- 2 comments
Labels: bug
#166 - Release 2.0.0
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#165 - Release 2.0.0
Issue -
State: closed - Opened by rhpvorderman over 1 year ago
#164 - Fix symlinks to directories fail when copying with --git-aware flag.
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#163 - Add an encoding key to the YAML. Only open and read files once at maximum.
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#162 - Collecting tests fails due to git submodules and symlinks
Issue -
State: closed - Opened by wholtz over 1 year ago
- 3 comments
#161 - File encodings can not be defined when opening files for content tests
Issue -
State: closed - Opened by fabianegli over 1 year ago
- 5 comments
#160 - Files are read twice even if no patterns are given
Issue -
State: closed - Opened by fabianegli over 1 year ago
- 2 comments
#159 - How to run pytest-workflow from Python?
Issue -
State: open - Opened by stevekm over 1 year ago
- 4 comments
#158 - Workflow testing at scale using SLURM
Issue -
State: closed - Opened by wholtz over 1 year ago
- 3 comments
#157 - Drop python 3.6 support
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#156 - docs: pytest flags -k and -m are not supported
Pull Request -
State: closed - Opened by wholtz over 1 year ago
- 1 comment
#155 - Selecting a subset of tests to run
Issue -
State: closed - Opened by wholtz over 1 year ago
- 4 comments
#154 - Skipping when exit code has failed for workflow custom tests.
Issue -
State: open - Opened by rhpvorderman over 1 year ago
- 1 comment
Labels: Accepted feature
#153 - Exitcode skips
Pull Request -
State: closed - Opened by lucasvanb over 1 year ago
- 1 comment
#152 - Skip content tests when file does not exist.
Pull Request -
State: closed - Opened by lucasvanb over 1 year ago
#151 - Add a check if all submodules are present and cloned.
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
- 2 comments
#150 - Remove underscore imports
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#149 - Enable tests on python 3.11
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#148 - Use of Google Cloud Storage outside GCE
Issue -
State: closed - Opened by lmtani over 1 year ago
- 2 comments
#147 - Add examples for testing Bash scripts
Pull Request -
State: closed - Opened by Redmar-van-den-Berg over 1 year ago
- 1 comment
#146 - Standerderror exitcode
Pull Request -
State: closed - Opened by lucasvanb over 1 year ago
- 2 comments
#145 - Document using pytest.ini
Pull Request -
State: closed - Opened by rhpvorderman over 1 year ago
#144 - Nextflow test documentation2
Pull Request -
State: closed - Opened by lucasvanb over 1 year ago
- 4 comments
#143 - Nextflow test
Pull Request -
State: closed - Opened by lucasvanb over 1 year ago
#142 - platform-specific settings
Issue -
State: closed - Opened by seanrjohnson almost 2 years ago
- 4 comments
#141 - custom skip/include lists
Issue -
State: open - Opened by seanrjohnson almost 2 years ago
- 3 comments
#140 - Add language examples to the documentation
Issue -
State: closed - Opened by Redmar-van-den-Berg about 2 years ago
- 3 comments
Labels: Documentation
#139 - pytest-workflow crashes when git submodules are missing
Issue -
State: closed - Opened by Redmar-van-den-Berg about 2 years ago
- 1 comment
Labels: enhancement
#138 - Document the use of environment variables with pytest-workflow
Pull Request -
State: closed - Opened by rhpvorderman about 2 years ago
#137 - Enormous walll of text when a worklow fails is unhelpful.
Issue -
State: closed - Opened by rhpvorderman about 2 years ago
- 3 comments
Labels: enhancement
#136 - Document pytest ini
Issue -
State: closed - Opened by rhpvorderman about 2 years ago
Labels: Documentation
#135 - Stdout and stderr should be displayed on command failure.
Issue -
State: closed - Opened by rhpvorderman about 2 years ago
- 1 comment
Labels: enhancement
#134 - Avoid capturing stdout and stderr
Issue -
State: closed - Opened by pkerpedjiev about 2 years ago
- 7 comments
#133 - allow passing through host env vars to executing commands
Pull Request -
State: closed - Opened by jchorl over 2 years ago
- 3 comments
#132 - Use of environment variables should be clarified in the documentation
Issue -
State: closed - Opened by awgymer over 2 years ago
- 9 comments
#131 - Fix deprecation warnings from pytest 7.0.0
Pull Request -
State: closed - Opened by rhpvorderman over 2 years ago
- 2 comments
#130 - Throw an error when files checked in in git are not found.
Pull Request -
State: closed - Opened by rhpvorderman over 2 years ago
#129 - pytest-workflow crashes when files in git are removed
Issue -
State: closed - Opened by Redmar-van-den-Berg over 2 years ago
- 2 comments
#128 - Release 1.6.0
Pull Request -
State: closed - Opened by rhpvorderman over 2 years ago
#127 - Release 1.6.0
Issue -
State: closed - Opened by rhpvorderman over 2 years ago
#126 - Make pytest-workflow git-aware
Pull Request -
State: closed - Opened by rhpvorderman over 2 years ago
- 4 comments
#125 - Difficulty using with Nextflow due to the `work` folder.
Issue -
State: closed - Opened by jrm5100 over 2 years ago
- 5 comments
#124 - Add python 3.10 support
Pull Request -
State: closed - Opened by rhpvorderman over 2 years ago
#123 - Better fitting description
Pull Request -
State: closed - Opened by rhpvorderman over 3 years ago
#122 - Latest version does not work due to pytest deprecation
Issue -
State: closed - Opened by Redmar-van-den-Berg over 3 years ago
- 1 comment
#121 - Release 1.5.0
Pull Request -
State: closed - Opened by rhpvorderman over 3 years ago
#120 - Release 1.5.0
Issue -
State: closed - Opened by rhpvorderman over 3 years ago
#119 - Switch to github CI. Test on 3.9 explicitly.
Pull Request -
State: closed - Opened by rhpvorderman over 3 years ago
#118 - Update output format
Pull Request -
State: closed - Opened by Redmar-van-den-Berg over 3 years ago
- 2 comments
#117 - Make tests work with pytest > 6. Move md5sum to utils.
Pull Request -
State: closed - Opened by rhpvorderman almost 4 years ago
#116 - Use newest version of cromwell in testing.
Pull Request -
State: closed - Opened by rhpvorderman almost 4 years ago
#115 - Invocation
Pull Request -
State: closed - Opened by OvalAdmin almost 4 years ago
- 2 comments
#114 - Give more friendly errors on permission errors when trying to remove directories.
Pull Request -
State: closed - Opened by rhpvorderman almost 4 years ago
#113 - Working Directory: Windows Permissions
Issue -
State: open - Opened by OvalAdmin about 4 years ago
- 6 comments
#112 - Current Directory
Issue -
State: closed - Opened by OvalAdmin about 4 years ago
- 4 comments
#111 - Improve code readability by making better use of pathlib.
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
#110 - Release 1.4.0
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
#109 - Release 1.4.0
Issue -
State: closed - Opened by rhpvorderman about 4 years ago
#108 - Deprecate use of name in workflow marks
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
#107 - Add regex evaluation to the test possibilities.
Pull Request -
State: closed - Opened by Redmar-van-den-Berg about 4 years ago
- 1 comment
#106 - Add `contains_regex` and `must_not_contain_regex` keys to test arsenal.
Issue -
State: closed - Opened by rhpvorderman about 4 years ago
Labels: enhancement
#105 - Release 1.3.0
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
#104 - Release 1.3.0
Issue -
State: closed - Opened by rhpvorderman about 4 years ago
#103 - Make sure custom tests can run on multiple workflows.
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
- 1 comment
#102 - Documentation fixes
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
#101 - Add a strategy that saves disk space by using soft links.
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
#100 - Refactor pytest-workflow using python 3.6 tools.
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago
#99 - Fix deprecation warnings
Pull Request -
State: closed - Opened by rhpvorderman about 4 years ago