Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / LRGASP/lrgasp-submissions issues and pull requests
#48 - show have a pipeline name as well as submitter name
Issue -
State: open - Opened by diekhans over 1 year ago
#47 - reference_transcript_id attribute not validated
Issue -
State: open - Opened by diekhans almost 3 years ago
Labels: future
#46 - additional challenge 2 submission
Issue -
State: open - Opened by mei-du almost 3 years ago
- 2 comments
#45 - Challenge 3, long_short, Illumina + ONT dRNA submission
Issue -
State: open - Opened by andrewprzh almost 3 years ago
- 1 comment
#44 - Comma-separated column names do not match libraries in experiment.json
Issue -
State: closed - Opened by andrewprzh almost 3 years ago
- 2 comments
#43 - lrgasp-synapse-download doesn't handle specifying a single file
Issue -
State: open - Opened by diekhans almost 3 years ago
#42 - mismatch between data matrix and synapse for simulated data id
Issue -
State: open - Opened by diekhans almost 3 years ago
#41 - Unspecified parameter in model description
Issue -
State: open - Opened by andrewprzh about 3 years ago
#40 - fix simulation tool mixup
Pull Request -
State: closed - Opened by andrewprzh about 3 years ago
#39 - conflicting info on simulated data sample identifiers
Issue -
State: closed - Opened by julienlag about 3 years ago
- 1 comment
#38 - simulation software mixup
Issue -
State: open - Opened by julienlag about 3 years ago
- 1 comment
#37 - creating a team in Synapse is mandatory
Issue -
State: closed - Opened by julienlag about 3 years ago
- 1 comment
#36 - lrgasp-validate-entry looks for non-gz files
Issue -
State: closed - Opened by julienlag about 3 years ago
- 1 comment
#35 - lrgasp-tools ambiguous output
Issue -
State: open - Opened by julienlag about 3 years ago
- 1 comment
#34 - python virtual environment for submission/validation tools
Issue -
State: closed - Opened by julienlag about 3 years ago
- 1 comment
#33 - unused reads in read-to-model map file format
Issue -
State: closed - Opened by julienlag about 3 years ago
- 1 comment
#32 - Modify entries orgnaization to better match challenges
Pull Request -
State: closed - Opened by diekhans about 3 years ago
#31 - Synapse submitssion tools and documentation
Pull Request -
State: closed - Opened by diekhans about 3 years ago
#30 - add new Sequel II subread BAMs to the RNA-Seq data matrix
Issue -
State: closed - Opened by julienlag about 3 years ago
- 2 comments
#29 - document required login for synypse
Issue -
State: closed - Opened by diekhans about 3 years ago
- 1 comment
#28 - PB adapters
Issue -
State: closed - Opened by Lutri22 over 3 years ago
- 2 comments
#27 - Simulation metadata
Pull Request -
State: closed - Opened by andrewprzh over 3 years ago
#26 - minor changes in challenge description
Pull Request -
State: closed - Opened by andrewprzh over 3 years ago
#25 - description for simulated data
Pull Request -
State: closed - Opened by andrewprzh over 3 years ago
#24 - add aligner and parameters to metadata
Issue -
State: closed - Opened by diekhans about 4 years ago
- 1 comment
#23 - duplicate ids in different genes
Issue -
State: closed - Opened by diekhans about 4 years ago
- 2 comments
#22 - submission with IDs that do not match GTF
Issue -
State: closed - Opened by diekhans about 4 years ago
- 2 comments
#21 - Extra tab in one submitter
Issue -
State: closed - Opened by diekhans about 4 years ago
- 2 comments
#20 - ID column must be called “ID”, not IDs, nor transcript_id ...
Issue -
State: closed - Opened by diekhans about 4 years ago
- 2 comments
#19 - `challenge_id` and `submission_type` metadata attributes should be better described
Issue -
State: closed - Opened by julienlag about 4 years ago
- 1 comment
#18 - valid Python-style identifier
Issue -
State: closed - Opened by julienlag about 4 years ago
- 1 comment
#17 - Gene vs. transcript level expression
Issue -
State: open - Opened by fairliereese over 4 years ago
- 2 comments
#16 - consistency of transcript_id's in model GTF vs expression matrix
Issue -
State: closed - Opened by julienlag over 4 years ago
- 1 comment
#15 - File format conversion scripts for output from specific tools
Issue -
State: open - Opened by fairliereese over 4 years ago
- 1 comment
#14 - Do we need a separate JSON for the read to model map?
Issue -
State: closed - Opened by cindyeliang over 4 years ago
- 2 comments
#13 - fix link to submission.json example
Pull Request -
State: closed - Opened by andrewprzh over 4 years ago
#12 - The Illumina GM12878 pilot data ENCSR000AEH does not include SIRVs
Issue -
State: open - Opened by julienlag over 4 years ago
- 3 comments
#11 - read id to model format
Issue -
State: closed - Opened by fairliereese over 4 years ago
- 4 comments
#10 - The challenge_id json property is misspelled
Issue -
State: closed - Opened by julienlag over 4 years ago
- 1 comment
#9 - The submission.json example is 404
Issue -
State: closed - Opened by julienlag over 4 years ago
- 1 comment
#8 - provide flowcell and kit version for ONT datasets
Issue -
State: open - Opened by julienlag over 4 years ago
- 1 comment
#7 - fixed links to model-format.md
Pull Request -
State: closed - Opened by andrewprzh over 4 years ago
- 1 comment
#6 - Define process for transfering files, recommend tools.
Issue -
State: closed - Opened by diekhans over 4 years ago
- 5 comments
#5 - Create Mapping_reads2transcript_format.md
Pull Request -
State: closed - Opened by FJPardoPalacios over 4 years ago
- 1 comment
#4 - Create expression_matrix_format.md
Pull Request -
State: closed - Opened by FJPardoPalacios over 4 years ago
#3 - Added file format sections and submission sections
Pull Request -
State: closed - Opened by anbrooks over 4 years ago
- 1 comment
#2 - added illumina and pacbio fastq links to readme
Pull Request -
State: closed - Opened by fairliereese over 4 years ago
#1 - Added table for GM12878 pilot data
Pull Request -
State: closed - Opened by anbrooks over 4 years ago