LKremer/scbs issues and pull requests

#21 - code for downstream analysis of the VMR matrix

Issue - State: open - Opened by JiayiLi21 2 months ago - 1 comment

#20 - wrong repo

Issue - State: closed - Opened by ashrosewood 10 months ago

#19 - Sparse output

Pull Request - State: closed - Opened by LKremer 11 months ago

#18 - allow `scbs filter` to overwrite the input directory

Issue - State: closed - Opened by LKremer over 1 year ago - 1 comment

#17 - add more VMR info to the scbs scan output

Issue - State: closed - Opened by LKremer over 1 year ago - 1 comment

#16 - scbs filter should preserve the run_info log file

Issue - State: closed - Opened by LKremer over 1 year ago

#15 - add more DMR information to the scbs diff output

Issue - State: closed - Opened by LKremer almost 2 years ago

#14 - Add support for biscuit .bed output

Pull Request - State: closed - Opened by valentinwust almost 2 years ago - 1 comment

#13 - fix find_peaks and add tests for DMR detection

Pull Request - State: closed - Opened by LKremer about 2 years ago

#12 - Re-implement scbs matrix #7

Pull Request - State: closed - Opened by LKremer about 2 years ago

#11 - Differential methylation

Pull Request - State: closed - Opened by martinabraun about 2 years ago

#10 - feature request: merging files for memory issues?

Issue - State: closed - Opened by chooliu about 2 years ago - 9 comments
Labels: enhancement

#9 - make "scbs filter" crash when you filter all cells

Issue - State: closed - Opened by LKremer over 2 years ago
Labels: enhancement

#8 - custom format specification

Issue - State: closed - Opened by simon-anders over 2 years ago - 2 comments

#7 - scbs matrix: Allow user to choose between long or wide matrix format

Issue - State: closed - Opened by LKremer over 2 years ago - 1 comment
Labels: enhancement

#6 - Add a method to allow for easy cell filtering (e.g. after QC)

Issue - State: closed - Opened by LKremer over 2 years ago - 2 comments

#5 - pandas is faster than loadtxt

Pull Request - State: closed - Opened by alexey0308 about 3 years ago - 2 comments

#4 - [WIP] Hdf5 io

Pull Request - State: open - Opened by alexey0308 about 3 years ago

#3 - Coverage class

Pull Request - State: closed - Opened by alexey0308 about 3 years ago - 1 comment

#2 - Use CSC format rather than CSR

Pull Request - State: closed - Opened by alexey0308 about 3 years ago - 8 comments

#1 - Split big file into several stage-files

Pull Request - State: closed - Opened by alexey0308 about 3 years ago - 3 comments

Ecosyste.ms: Issues

GitHub / LKremer/scbs issues and pull requests