LFPy/LFPy issues and pull requests

#462 - Question for 'Example 10: Extracellular stimulation of neurons' function

Issue - State: closed - Opened by Vince0226 3 months ago - 4 comments

#461 - imem recording

Issue - State: closed - Opened by ziadaali 4 months ago - 2 comments

#460 - More efficient calculation of axial currents

Pull Request - State: open - Opened by torbjone 10 months ago - 2 comments
Labels: enhancement

#459 - More efficient calculation of axial currents

Issue - State: open - Opened by torbjone 10 months ago
Labels: enhancement

#458 - Fixed readthedocs build and other minor issues

Pull Request - State: closed - Opened by torbjone almost 1 year ago - 1 comment

#457 - Greetings/first-interaction GH action is failing.

Issue - State: closed - Opened by espenhgn almost 1 year ago
Labels: bug

#456 - readthedocs build fail

Issue - State: closed - Opened by espenhgn almost 1 year ago - 1 comment
Labels: bug, documentation

#455 - Documentation fixes

Pull Request - State: closed - Opened by torbjone about 1 year ago - 1 comment
Labels: documentation

#454 - Update README.md

Pull Request - State: closed - Opened by torbjone about 1 year ago - 3 comments
Labels: documentation

#453 - LFPY use functions deprecated in NEURON8.0.0 ex. neuron.xopen

Issue - State: open - Opened by acyang about 1 year ago - 1 comment

#452 - UnicodeDecodeError: 'cp950' codec can't decode byte 0xcf in position 15472: illegal multibyte sequence

Issue - State: closed - Opened by acyang about 1 year ago - 2 comments

#451 - Update README.md

Pull Request - State: closed - Opened by torbjone about 1 year ago - 1 comment

#450 - `AlphaSynapse` bug with Hay neuron

Issue - State: open - Opened by espenhgn about 1 year ago

#449 - Deprecation warning

Issue - State: closed - Opened by espenhgn about 1 year ago - 1 comment
Labels: enhancement

#448 - Membrane currents do not sum to zero

Issue - State: closed - Opened by somogyvari about 1 year ago - 15 comments

#447 - Ebrains mirror

Pull Request - State: closed - Opened by torbjone over 1 year ago - 4 comments
Labels: enhancement

#446 - Method for calculating membrane currents from membrane potentials

Pull Request - State: closed - Opened by torbjone over 1 year ago - 1 comment
Labels: enhancement, feature

#445 - Add method to calculate membrane currents from membrane potentials

Issue - State: closed - Opened by torbjone over 1 year ago - 1 comment
Labels: enhancement

#444 - NYHeadmodel on Docker: download by default?

Issue - State: closed - Opened by filippomc over 1 year ago - 8 comments

#443 - Add `pyproject.toml` file

Issue - State: open - Opened by espenhgn almost 2 years ago - 1 comment
Labels: no-issue-activity, Installation

#442 - NEURON is pip installable for Python 3.11

Pull Request - State: closed - Opened by espenhgn almost 2 years ago - 1 comment
Labels: enhancement, Installation

#441 - bump LFPy-2.3rc0 -> 2.3

Pull Request - State: closed - Opened by espenhgn almost 2 years ago - 1 comment

#440 - Add Python-3.11 to build matrix

Issue - State: closed - Opened by espenhgn almost 2 years ago
Labels: enhancement

#439 - Prep LFPy-2.3 release

Pull Request - State: closed - Opened by espenhgn almost 2 years ago - 1 comment
Labels: release

#438 - Release LFPy-v2.3

Issue - State: closed - Opened by espenhgn almost 2 years ago - 1 comment
Labels: release

#437 - faster `InfiniteHomogeneousVolCondMEG.calculate_H_from_iaxial` method

Pull Request - State: closed - Opened by espenhgn about 2 years ago - 2 comments
Labels: enhancement

#436 - Remove/redo `SphericallySymmetricVolCondMEG.calculate_H_from_iaxial()`

Issue - State: open - Opened by espenhgn about 2 years ago - 2 comments
Labels: enhancement, no-issue-activity

#435 - Revise `LFPy.InfiniteHomogeneousVolCondMEG.calculate_H_from_iaxial()`?

Issue - State: closed - Opened by espenhgn about 2 years ago - 1 comment
Labels: enhancement

#434 - Installation help: LFPy.run_tests() failures, MEArec

Issue - State: closed - Opened by DavidALloyd about 2 years ago - 12 comments

#433 - Get rid of package dependency on `mpi4py`

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 7 comments
Labels: enhancement, feature, Installation

#432 - never close stale issues/PRs

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement

#431 - Don't autoclose stale issues

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: enhancement

#430 - Make mpi4py a weak dependency

Pull Request - State: closed - Opened by alejoe91 over 2 years ago - 3 comments

#429 - Make `mpi4py` an optional dependency

Issue - State: closed - Opened by alejoe91 over 2 years ago - 8 comments
Labels: enhancement, proposal, Installation

#428 - make sure examples and tests write to /tmp or similar

Issue - State: open - Opened by espenhgn over 2 years ago - 2 comments
Labels: enhancement, no-issue-activity

#427 - runtime compile of NMODL files

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement, Installation

#426 - Improve lookup of `nrnivmodl` script in `setup.py`

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: Installation

#425 - fixed _set_*_recorders use of dt

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: bugfix

#424 - `LFPy.Cell._set_voltage_recorders()` don't use `dt` argument

Issue - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: bug

#423 - CNS*2022 satellite tutorial on LFPy

Issue - State: closed - Opened by sanjayankur31 over 2 years ago - 4 comments

#422 - removed deprecated MEG class

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment

#421 - New LFPy logo, some docstring fixes

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment

#420 - Remove deprecated class `MEG`

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: enhancement

#419 - set `Cell.arc3d` if `pt3d==True`

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement

#418 - Return `arc3d` from `Cell._collect_pt3d()`

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: enhancement

#417 - fix Neuron 8.1 issue, version bump

Pull Request - State: closed - Opened by espenhgn over 2 years ago
Labels: enhancement, bugfix

#416 - Backport NEURON 8.1 support into LFPy-2.2.x branch

Issue - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: bug

#415 - Fix crash with Neuron 8.1; improved Cell.get_idx_parent_children method

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement, bugfix

#414 - NEURON 8.1 breaks LFPy@master

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: bug

#413 - Improved `Cell.get_idx_parent_children()` method

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement

#412 - `UnboundLocalError` from `Cell.get_idx_parent_children()`

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: bug

#411 - Fix Network MPI issue

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: bugfix

#410 - Iteration over `LFPy.Network` simulations fails with MPI

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: bug

#409 - Minor example fixes

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement

#408 - Update tests for LFPykit@master, bump version to 2.3.dev,

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement

#407 - Python 3.7-3.10; updated citation

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement, Installation

#406 - Unsupport Python-3.6

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: Installation

#405 - bump version to 2.2.5

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment

#404 - Release LFPy-2.2.5

Issue - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: release

#403 - fix download of Hay2011 model codes

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: bugfix

#402 - Make `import LFPy` lowercase

Issue - State: open - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement, no-issue-activity

#401 - Fix LFPy-2.2.* to LFPykit-0.4.*

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: enhancement, Installation

#400 - Update LFPy for LFPykit-0.5.dev; start LFPy-2.3.dev

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: bug, LFPykit, Installation

#399 - Replace Lintly action

Pull Request - State: closed - Opened by espenhgn over 2 years ago - 1 comment
Labels: enhancement

#398 - Replace Lintly action and badge

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: enhancement

#397 - Get rid of "Local Field Potentials in Python"/redo logo

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: enhancement

#396 - Fix Hay2011 download codes

Issue - State: closed - Opened by espenhgn over 2 years ago
Labels: bug

#395 - fix test function

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: bugfix

#394 - ImportError: cannot import name 'testMEG' from 'LFPy.test.test_eegmegcalc'

Issue - State: closed - Opened by espenhgn almost 3 years ago
Labels: bug

#393 - bump version to 2.2.4

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment

#392 - use st.truncnorm for delays and multapses. formatting

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: enhancement

#391 - `%pylab inline` no longer an option

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: enhancement

#390 - Require `LFPykit>=0.4`

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: LFPykit

#389 - Release LFPy-2.2.4

Issue - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: release

#388 - Require `LFPykit>=0.4`

Issue - State: closed - Opened by espenhgn almost 3 years ago
Labels: enhancement

#387 - remove use of <morphology>.rot files

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 4 comments
Labels: enhancement

#386 - %pylab is deprecated, use %matplotlib inline

Issue - State: closed - Opened by espenhgn almost 3 years ago
Labels: enhancement

#385 - Remove mazzoni example files

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: enhancement

#384 - remove NSG example files

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: enhancement

#383 - Incorporate InfiniteHomogeneousVolCondMEG and SphericallySymmetricVolCondMEG

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: feature

#382 - add py=3.10 to build matrix

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment

#381 - fix MEG.calculate_H_from_iaxial method and docstring

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: bugfix

#380 - `LFPy.MEG.calculate_H_from_iaxial` throws `ValueError`

Issue - State: closed - Opened by espenhgn almost 3 years ago
Labels: bug

#379 - Update CITATION.cff

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment

#378 - Zenodo.org didn't pull the LFPy-2.2.3 release

Issue - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: bug

#377 - add CITATION.cff file

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: enhancement

#376 - Updated Dockerfile, pinning versions, linting

Pull Request - State: closed - Opened by espenhgn almost 3 years ago - 1 comment
Labels: enhancement

#375 - Add CITATION.cff file

Issue - State: closed - Opened by espenhgn almost 3 years ago
Labels: enhancement

#374 - Remove references to hub.docker.com

Issue - State: closed - Opened by espenhgn almost 3 years ago
Labels: enhancement

#373 - Implementation of Network.enable_extracellular_stimulation()

Pull Request - State: closed - Opened by Alexis-Melot almost 3 years ago - 2 comments
Labels: feature

#372 - NotImplementedError for `Network.enable_extracellular_stimulation()`

Issue - State: closed - Opened by Alexis-Melot almost 3 years ago - 3 comments
Labels: feature

#371 - bump version to 2.2.3

Pull Request - State: closed - Opened by espenhgn about 3 years ago - 1 comment

#370 - Release 2.2.3

Issue - State: closed - Opened by espenhgn about 3 years ago - 1 comment
Labels: release

#369 - Some minor fixes to example scripts

Pull Request - State: closed - Opened by espenhgn about 3 years ago - 1 comment
Labels: enhancement

#368 - `create_synapse` and `Synapse` have different behavior

Issue - State: closed - Opened by arashgmn about 3 years ago - 3 comments
Labels: enhancement, no-issue-activity

#367 - examples/bioRxiv281717 codes to LFPy@master

Issue - State: closed - Opened by espenhgn about 3 years ago
Labels: bug

#366 - Update examples/example_EPFL_neurons.py

Issue - State: open - Opened by espenhgn about 3 years ago - 1 comment
Labels: enhancement, no-issue-activity

#365 - filter warnings for existing sections with networks

Pull Request - State: closed - Opened by espenhgn about 3 years ago - 1 comment
Labels: enhancement

#364 - Remove examples/mazzoni_example codes

Issue - State: closed - Opened by espenhgn about 3 years ago
Labels: enhancement

#363 - Remove examples/nsg_example/*

Issue - State: closed - Opened by espenhgn about 3 years ago
Labels: enhancement

GitHub / LFPy/LFPy issues and pull requests