KrishnaswamyLab/MAGIC issues and pull requests

#226 - Add Yale Ventures Non-Commercial License

Pull Request - State: closed - Opened by dbhaskar92 about 2 months ago

#225 - Update LICENSE to Yale Ventures Non-Commercial License

Pull Request - State: open - Opened by dbhaskar92 3 months ago

#224 - Is it possible to pass a custom embedding?

Issue - State: open - Opened by zvittorio 8 months ago
Labels: question

#223 - Is it a good idea to run magic on sctransform processed data?

Issue - State: open - Opened by iichelhadi 8 months ago
Labels: question

#222 - Rmagic

Issue - State: open - Opened by Chloe-HJL 9 months ago - 2 comments
Labels: bug

#221 - Option for Computing KNN with some genes, but returning whole graph

Issue - State: open - Opened by Alistair-Turcan 9 months ago
Labels: enhancement

#220 - Getting 0.0 after imputation

Issue - State: closed - Opened by sam-va about 1 year ago
Labels: question

#219 - can not put in more than 1 genes.

Issue - State: closed - Opened by yaolutian about 1 year ago - 5 comments
Labels: question

#218 - Name of the package confused with python-magic package

Issue - State: open - Opened by Rohit-Satyam over 1 year ago
Labels: bug

#217 - ValueError: Length mismatch: Expected axis has 100 elements, new values have 10782 elements

Issue - State: open - Opened by handesome over 1 year ago
Labels: question

#216 - magic() function error: Stuck on "Calculating PCA..."

Issue - State: open - Opened by StefanosVoglis over 1 year ago - 1 comment
Labels: bug

#215 - Rmagic was removed from the CRAN repository

Issue - State: open - Opened by kuang-da almost 2 years ago - 3 comments
Labels: bug

#214 - Animate MAGIC error

Issue - State: open - Opened by JLTrincado about 2 years ago
Labels: bug

#213 - problem running magic

Issue - State: open - Opened by AmitElad about 2 years ago - 1 comment
Labels: question

#212 - Does it really run in parallel?

Issue - State: open - Opened by LucaTucciarone about 2 years ago
Labels: question

#211 - Error: package or namespace load failed for 'Rmagic':

Issue - State: open - Opened by Gabby4548 about 2 years ago - 5 comments
Labels: question

#210 - MAGIC on RNA + ATAC data

Issue - State: open - Opened by yamajackr about 2 years ago - 5 comments
Labels: question

#206 - NaN values when computing the kernel lead to inability to find t-optimal MATLAB.

Issue - State: open - Opened by ElenaMerinoTejero about 2 years ago

#205 - Running UMAP after Magic - is it valid?

Issue - State: open - Opened by Natacoman about 2 years ago
Labels: question

#204 - Magic + seurat workflow

Issue - State: open - Opened by anemartinezlarrinaga2898 about 2 years ago - 4 comments
Labels: question

#203 - Suggestions for Unable to allocate 276. GiB for an array with shape (161877, 228942) and data type float64

Issue - State: open - Opened by bitcometz about 2 years ago
Labels: question

#202 - Magic issue with mkl

Issue - State: open - Opened by abhay0305 over 2 years ago
Labels: bug

#201 - magic

Issue - State: open - Opened by abhay0305 over 2 years ago
Labels: bug

#200 - Diffusion operator construction

Issue - State: open - Opened by qubit0 over 2 years ago
Labels: question

#199 - MAGIC and batches

Issue - State: open - Opened by AVitriolo almost 3 years ago - 1 comment

#198 - Error: cause segfault, cause 'invalid permissions'

Issue - State: open - Opened by xxxcha over 3 years ago
Labels: question

#197 - Error in py_call_impl(callable, dots$args, dots$keywords) : ValueError: Input contains NaN, infinity or a value too large for dtype('float64').

Issue - State: closed - Opened by LJK1991 over 3 years ago - 2 comments

#196 - fix deploy script

Pull Request - State: closed - Opened by scottgigante over 3 years ago - 1 comment

#195 - MAGIC v3.0

Pull Request - State: closed - Opened by scottgigante over 3 years ago

#194 - magic_op.set_params(knn=5) and showed: AttributeError: 'MAGIC' object has no attribute 'a'

Issue - State: closed - Opened by Roger-GOAT over 3 years ago - 1 comment

#193 - Using MAGIC with a combined dataset

Issue - State: open - Opened by saeedfc almost 4 years ago - 4 comments
Labels: question

#192 - Use MAGIC on SEURAT data

Issue - State: open - Opened by millersan about 4 years ago
Labels: question

#191 - MAGIC v2.0.4

Pull Request - State: closed - Opened by scottgigante about 4 years ago

#190 - SparseDataFrame is obsolete

Issue - State: closed - Opened by gokceneraslan about 4 years ago - 1 comment
Labels: bug

#189 - Two runs by MAGIC

Issue - State: open - Opened by GeniusYx about 4 years ago - 1 comment
Labels: question

#188 - Error in py_module_import when Seurat is loaded before Rmagic

Issue - State: open - Opened by petrsh over 4 years ago - 1 comment
Labels: bug

#187 - "Error: package or namespace load failed for 'Rmagic'

Issue - State: open - Opened by tuoliver over 4 years ago - 3 comments
Labels: question

#186 - Visualizing MAGIC values on PCA

Issue - State: open - Opened by CYZou over 4 years ago - 2 comments
Labels: bug

#185 - is here a potential bug?

Issue - State: closed - Opened by dustincys over 4 years ago - 4 comments
Labels: bug

#184 - ligand-receptor pair analysis

Issue - State: closed - Opened by yaolutian over 4 years ago - 2 comments
Labels: question

#183 - Cannot load package phateR or install it

Issue - State: closed - Opened by Lesdormis almost 5 years ago - 3 comments
Labels: bug

#182 - Which slot is Rmagic pulling from a Seurat object?

Issue - State: closed - Opened by dagarfield almost 5 years ago - 7 comments
Labels: question

#181 - TaskLogger error - Rmagic

Issue - State: closed - Opened by tallulandrews almost 5 years ago - 3 comments
Labels: bug

#180 - Cannot run MAGIC on certain types of graphtool graphs

Issue - State: closed - Opened by mkuchroo almost 5 years ago

#179 - Use MAGIC on SEURAT integrated DATA

Issue - State: closed - Opened by DomenicoSkyWalker89 almost 5 years ago - 6 comments
Labels: question