Ecosyste.ms: Issues

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GitHub / KrasnitzLab/SCclust issues and pull requests

#38 - prepare SCclust tutorial based on Navin T10 case

Issue - State: closed - Opened by lchorbadjiev over 6 years ago

#36 - integrate SCclust into sgains package

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#35 - implement calc_badbins based on centroareas

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#34 - support running SCGV viewer into batch mode

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#33 - check homoloss of cells in GL9.2

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#32 - implement homoloss filter

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#31 - add guide table to GL9.2 test case results

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#30 - #24 check and reproduce subclones results for gl7.2 case

Pull Request - State: closed - Opened by lchorbadjiev almost 7 years ago

#27 - clean up SCclust repository and build proper R package

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#26 - setup test on GL9.2

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#25 - Clean up

Pull Request - State: closed - Opened by lchorbadjiev almost 7 years ago

#24 - check and reproduce subclones results for gl7.2 case

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#22 - run sim fisher experiment on gl7.2 dataset

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#21 - implement full SCclust pipeline to prepare viewer data

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#20 - implement pinmat calcuation pipeline

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#19 - explore results from TreePy.R script

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#18 - integrate SCclust results into SCGV viewer

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#17 - integrate SCclust into sgains package

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#16 - review and test convergence of simFisher procedure

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#15 - review and test find subclones

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#14 - find clones review and testing

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#13 - review and implement hierarchical clustering

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#12 - review and implement fisherFDR

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#11 - setup jenkins build for SCclust

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#10 - review and implement simFisher

Issue - State: closed - Opened by lchorbadjiev almost 7 years ago

#9 - review and implement calculation of pins and pinmat

Issue - State: closed - Opened by lchorbadjiev about 7 years ago

#8 - review and implement handling of badbins and dropareas

Issue - State: closed - Opened by lchorbadjiev about 7 years ago

#7 - implement segmentation based on initial code

Issue - State: closed - Opened by lchorbadjiev about 7 years ago

#6 - preparation of integration test case for the package

Issue - State: closed - Opened by lchorbadjiev about 7 years ago

#5 - create simple synthetic test data for SCclust package

Issue - State: closed - Opened by lchorbadjiev over 7 years ago

#4 - add initial testthat example test cases for SCclust package

Issue - State: closed - Opened by lchorbadjiev over 7 years ago

#3 - review original SCclust package

Issue - State: closed - Opened by lchorbadjiev over 7 years ago

#2 - setup full original SCclust package

Issue - State: closed - Opened by lchorbadjiev over 7 years ago

#1 - setup R development environment

Issue - State: closed - Opened by lchorbadjiev over 7 years ago