Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / KosinskiLab/AlphaPulldown issues and pull requests
#73 - Permission denied. I do not know why always put this error?
Issue -
State: closed - Opened by yaober almost 2 years ago
- 2 comments
#72 - Wrong paths passed to make_mmseq_features
Issue -
State: closed - Opened by jkosinski almost 2 years ago
#71 - Improve auto-creating output directory in create_individual_features.py
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 3 comments
#70 - prepare_seq_names.py not working?
Issue -
State: closed - Opened by jkosinski almost 2 years ago
#69 - Update manuals
Pull Request -
State: closed - Opened by henrywotton almost 2 years ago
#68 - --use_precomputed_msas=False is confusing here
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 2 comments
#67 - Mmseq2
Pull Request -
State: closed - Opened by henrywotton almost 2 years ago
#66 - Recalculate template features only in local mmseqs2 mode
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 2 comments
#65 - A small typo ;-)
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 3 comments
#64 - Adding templates for local mmseqs2 mode here?
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 2 comments
#63 - Where does it read template alignments?
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 3 comments
#62 - data_dir really not needed?
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 2 comments
#61 - Restructuring the MSA generation to include MMseqs2
Pull Request -
State: closed - Opened by jkosinski almost 2 years ago
#60 - Add a warning of not overloading the remote server
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 1 comment
#59 - Mmseq2
Pull Request -
State: closed - Opened by henrywotton almost 2 years ago
#58 - --max_template_date with MMSeqs2
Issue -
State: closed - Opened by jkosinski almost 2 years ago
- 3 comments
Labels: question
#57 - The option should be --mmseqs2 instead of --mmseq2
Issue -
State: closed - Opened by jkosinski almost 2 years ago
Labels: invalid
#56 - modeling of higher-order oligomers question
Issue -
State: closed - Opened by pillepalle123 almost 2 years ago
- 6 comments
#55 - `--model_preset` flag is not used
Issue -
State: open - Opened by swanss about 2 years ago
- 9 comments
#54 - Interpretation of output
Issue -
State: closed - Opened by nduan1 about 2 years ago
- 3 comments
#53 - Add option to not pair MSAs in run_multimer_jobs.py
Pull Request -
State: closed - Opened by swanss about 2 years ago
- 1 comment
#52 - Installing the project as a package in developer mode
Issue -
State: closed - Opened by swanss about 2 years ago
- 4 comments
#51 - Unable to initialize backend 'tpu_driver'
Issue -
State: closed - Opened by nduan1 about 2 years ago
- 4 comments
#50 - Create requirements.txt
Issue -
State: closed - Opened by gezmi about 2 years ago
- 2 comments
#49 - How to speed up the first step for model prediction?
Issue -
State: closed - Opened by nduan1 about 2 years ago
- 3 comments
#48 - CUDA out of memory error when running multimer
Issue -
State: closed - Opened by kdneuro about 2 years ago
- 2 comments
#47 - Error when running SLURM array job — TypeError: all_seq_msa_features() got an unexpected keyword argument 'msa_output_dir'
Issue -
State: closed - Opened by harshstava about 2 years ago
- 3 comments
#46 - Cleanup objects
Pull Request -
State: closed - Opened by henrywotton about 2 years ago
#45 - update alpha-analysis.sif
Pull Request -
State: closed - Opened by henrywotton about 2 years ago
#44 - Improve pi_score folder management
Issue -
State: closed - Opened by jkosinski about 2 years ago
Labels: enhancement
#43 - A question about the seq_index argument in job array mode
Issue -
State: closed - Opened by swanss about 2 years ago
- 1 comment
#42 - Requesting feature: ability to skip MSA generation step
Issue -
State: open - Opened by swanss about 2 years ago
- 1 comment
Labels: enhancement
#41 - jackhmmer fails to run
Issue -
State: closed - Opened by kdneuro about 2 years ago
- 2 comments
#40 - seq_index is not working
Issue -
State: closed - Opened by henrywotton about 2 years ago
- 1 comment
Labels: bug
#39 - Create LICENSE
Pull Request -
State: closed - Opened by jkosinski about 2 years ago
#38 - Readme2
Pull Request -
State: closed - Opened by jkosinski about 2 years ago
#37 - Update example_1.md
Pull Request -
State: closed - Opened by jkosinski about 2 years ago
#36 - Readme
Pull Request -
State: closed - Opened by jkosinski about 2 years ago
#35 - Issue 31
Pull Request -
State: closed - Opened by henrywotton about 2 years ago
#32 - Remove redunancies from predict_structure.py
Issue -
State: closed - Opened by jkosinski about 2 years ago
- 1 comment
#31 - Remove p-value from analysis table
Issue -
State: closed - Opened by jkosinski about 2 years ago
#27 - Use correct residue numbering in the PAE plots
Issue -
State: closed - Opened by jkosinski about 2 years ago
- 3 comments
#16 - Could we have an option for run_multimer_jobs.py to just print the number of all jobs?
Issue -
State: closed - Opened by jkosinski about 2 years ago
- 1 comment
#15 - Add info to the manual that relax is not run
Issue -
State: closed - Opened by jkosinski about 2 years ago
- 2 comments
#9 - Add option to zip MSA files
Issue -
State: closed - Opened by jkosinski about 2 years ago
- 2 comments
Labels: enhancement
#5 - Create instructions how to prepare MSAs with ColabFold?
Issue -
State: closed - Opened by jkosinski about 2 years ago